Wall clock time and date at job start Tue Mar 31 2020 11:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46995 * 2 1 4 4 N 1.46901 * 109.47459 * 240.00227 * 2 1 3 5 5 C 1.46889 * 111.00199 * 84.99894 * 4 2 1 6 6 C 1.52998 * 109.47312 * 180.02562 * 5 4 2 7 7 C 1.52995 * 109.47267 * 295.00234 * 6 5 4 8 8 C 1.53000 * 109.47459 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.47045 * 59.99792 * 8 7 6 10 10 C 1.52998 * 109.47417 * 180.02562 * 9 8 7 11 11 C 1.52995 * 109.47162 * 300.00390 * 9 8 7 12 12 C 1.52998 * 109.47417 * 174.99916 * 6 5 4 13 13 C 1.50696 * 109.46807 * 119.99814 * 2 1 3 14 14 C 1.38302 * 119.93469 * 260.00069 * 13 2 1 15 15 C 1.38094 * 120.07461 * 180.02562 * 14 13 2 16 16 C 1.38878 * 119.92859 * 0.27306 * 15 14 13 17 17 O 1.35748 * 120.07147 * 179.72501 * 16 15 14 18 18 C 1.34830 * 117.00101 * 354.46447 * 17 16 15 19 19 H 1.07999 * 119.99626 * 5.05831 * 18 17 16 20 20 C 1.38650 * 120.00326 * 185.05731 * 18 17 16 21 21 N 1.31562 * 120.00209 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00130 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47103 * 89.99872 * 22 20 18 24 24 H 1.48501 * 109.47279 * 210.00176 * 22 20 18 25 25 H 1.48498 * 109.46747 * 330.00169 * 22 20 18 26 26 C 1.38878 * 119.86109 * 359.47415 * 16 15 14 27 27 C 1.38104 * 119.93072 * 0.53047 * 26 16 15 28 28 H 1.08996 * 109.47248 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47398 * 300.00549 * 1 2 3 30 30 H 1.09010 * 109.46515 * 60.00208 * 1 2 3 31 31 H 1.00904 * 110.99862 * 208.96017 * 4 2 1 32 32 H 1.09000 * 109.47644 * 300.00259 * 5 4 2 33 33 H 1.09004 * 109.47369 * 60.00560 * 5 4 2 34 34 H 1.09007 * 109.46904 * 54.99965 * 6 5 4 35 35 H 1.09003 * 109.47320 * 299.99979 * 7 6 5 36 36 H 1.09003 * 109.47453 * 59.99819 * 7 6 5 37 37 H 1.09003 * 109.47113 * 300.00444 * 8 7 6 38 38 H 1.09001 * 109.47283 * 179.97438 * 8 7 6 39 39 H 1.09007 * 109.47043 * 60.00142 * 9 8 7 40 40 H 1.08996 * 109.47546 * 180.02562 * 10 9 8 41 41 H 1.09001 * 109.47091 * 300.00265 * 10 9 8 42 42 H 1.09003 * 109.47331 * 59.99869 * 10 9 8 43 43 H 1.08998 * 109.46959 * 299.99245 * 11 9 8 44 44 H 1.09005 * 109.46949 * 179.97438 * 11 9 8 45 45 H 1.08993 * 109.47512 * 300.00154 * 12 6 5 46 46 H 1.09007 * 109.47043 * 60.00134 * 12 6 5 47 47 H 1.08003 * 119.96310 * 359.97438 * 14 13 2 48 48 H 1.08000 * 120.04048 * 180.02562 * 15 14 13 49 49 H 0.96992 * 120.00121 * 180.02562 * 21 20 18 50 50 H 1.08003 * 120.03575 * 180.25499 * 26 16 15 51 51 H 1.07996 * 119.96455 * 179.74788 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1994 5 6 2.0826 0.2226 -2.3468 6 6 2.5952 -0.5331 -3.5744 7 6 4.0387 -0.9790 -3.3328 8 6 4.5511 -1.7353 -4.5601 9 6 4.4988 -0.8176 -5.7832 10 6 5.0106 -1.5740 -7.0107 11 6 3.0553 -0.3717 -6.0248 12 6 2.5429 0.3850 -4.7971 13 6 2.0322 -0.7104 1.2305 14 6 2.4585 0.0212 2.3241 15 6 2.9197 -0.6268 3.4529 16 6 2.9607 -2.0145 3.4872 17 8 3.4189 -2.6544 4.5933 18 6 3.9258 -1.8865 5.5788 19 1 3.8796 -0.8102 5.5026 20 6 4.5065 -2.4785 6.6900 21 7 5.0007 -1.7292 7.6518 22 14 4.5871 -4.3402 6.8215 23 1 5.8511 -4.8252 6.2113 24 1 4.5432 -4.7378 8.2516 25 1 3.4310 -4.9373 6.1059 26 6 2.5271 -2.7464 2.3895 27 6 2.0670 -2.0925 1.2635 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 2.9174 -1.1205 -1.0286 32 1 1.0872 0.6164 -2.5525 33 1 2.7590 1.0462 -2.1182 34 1 1.9692 -1.4081 -3.7500 35 1 4.6647 -0.1041 -3.1571 36 1 4.0760 -1.6332 -2.4617 37 1 3.9251 -2.6102 -4.7353 38 1 5.5797 -2.0525 -4.3881 39 1 5.1248 0.0574 -5.6080 40 1 4.9738 -0.9201 -7.8819 41 1 6.0390 -1.8920 -6.8388 42 1 4.3843 -2.4487 -7.1857 43 1 2.4293 -1.2466 -6.2001 44 1 3.0181 0.2825 -6.8959 45 1 1.5146 0.7027 -4.9693 46 1 3.1689 1.2600 -4.6215 47 1 2.4313 1.1005 2.2948 48 1 3.2521 -0.0550 4.3067 49 1 5.4072 -2.1433 8.4290 50 1 2.5539 -3.8259 2.4147 51 1 1.7335 -2.6611 0.4080 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063144711.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:18 Heat of formation + Delta-G solvation = -52.982456 kcal Electronic energy + Delta-G solvation = -26176.780936 eV Core-core repulsion = 22653.396818 eV Total energy + Delta-G solvation = -3523.384117 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.01054 -40.06569 -38.98871 -36.91643 -34.56396 -34.13219 -31.92221 -31.66998 -31.23107 -29.50736 -27.87810 -27.24630 -24.74915 -23.82229 -23.62800 -23.03953 -21.29869 -21.25891 -20.54769 -19.72280 -19.11256 -17.29571 -16.74428 -16.36058 -16.25245 -15.76596 -15.59078 -15.38648 -15.16708 -15.08706 -15.01988 -14.74106 -14.37788 -14.26674 -14.14020 -13.91053 -13.78583 -13.57275 -13.14287 -12.99492 -12.98070 -12.89060 -12.64950 -12.50776 -12.25711 -12.17124 -12.05639 -12.01558 -11.90428 -11.62879 -11.55327 -11.28849 -11.27783 -10.91690 -10.86423 -10.75380 -9.81075 -9.31296 -9.00148 -8.50880 -6.23465 0.56017 0.62126 1.30877 1.34912 1.51534 2.27406 2.74563 3.03697 3.14747 3.26231 3.79064 3.79802 3.89576 3.91042 4.06913 4.17889 4.20210 4.31791 4.39204 4.44196 4.55925 4.57986 4.61283 4.64133 4.68918 4.69923 4.73760 4.81057 4.85675 4.89701 4.94388 4.97075 5.05201 5.08116 5.11065 5.17690 5.23735 5.24903 5.30408 5.31870 5.38263 5.44959 5.46072 5.48450 5.55292 5.56141 5.67336 5.71945 5.78814 5.90213 6.20876 6.26238 6.50694 6.83478 7.58108 8.60711 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.018487 B = 0.002354 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.235107 B =11889.810800 C =12799.686526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.143 3.857 3 H 0.048 0.952 4 N -0.684 5.684 5 C 0.065 3.935 6 C -0.076 4.076 7 C -0.117 4.117 8 C -0.111 4.111 9 C -0.092 4.092 10 C -0.147 4.147 11 C -0.110 4.110 12 C -0.111 4.111 13 C -0.156 4.156 14 C -0.069 4.069 15 C -0.236 4.236 16 C 0.120 3.880 17 O -0.245 6.245 18 C -0.399 4.399 19 H 0.080 0.920 20 C 0.009 3.991 21 N -0.923 5.923 22 Si 0.971 3.029 23 H -0.266 1.266 24 H -0.267 1.267 25 H -0.263 1.263 26 C -0.192 4.192 27 C -0.048 4.048 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.342 0.658 32 H 0.076 0.924 33 H 0.025 0.975 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.061 0.939 44 H 0.067 0.933 45 H 0.068 0.932 46 H 0.059 0.941 47 H 0.132 0.868 48 H 0.107 0.893 49 H 0.285 0.715 50 H 0.128 0.872 51 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.281 2.896 -28.977 29.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.034 3.966 3 H 0.066 0.934 4 N -0.316 5.316 5 C -0.064 4.064 6 C -0.095 4.095 7 C -0.154 4.154 8 C -0.149 4.149 9 C -0.111 4.111 10 C -0.204 4.204 11 C -0.147 4.147 12 C -0.149 4.149 13 C -0.157 4.157 14 C -0.088 4.088 15 C -0.256 4.256 16 C 0.071 3.929 17 O -0.153 6.153 18 C -0.475 4.475 19 H 0.098 0.902 20 C -0.190 4.190 21 N -0.564 5.564 22 Si 0.793 3.207 23 H -0.190 1.190 24 H -0.192 1.192 25 H -0.187 1.187 26 C -0.211 4.211 27 C -0.066 4.066 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.161 0.839 32 H 0.094 0.906 33 H 0.043 0.957 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.078 0.922 47 H 0.150 0.850 48 H 0.125 0.875 49 H 0.094 0.906 50 H 0.145 0.855 51 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -5.795 2.437 -28.893 29.569 hybrid contribution 1.206 0.292 1.288 1.788 sum -4.589 2.729 -27.605 28.116 Atomic orbital electron populations 1.21732 0.93311 1.02249 1.01358 1.20181 0.95999 0.94509 0.85943 0.93372 1.60668 1.33615 1.33235 1.04103 1.22071 1.00595 0.93456 0.90279 1.21084 0.96014 0.98679 0.93725 1.21590 0.96047 0.99817 0.97968 1.21553 1.00767 0.98233 0.94318 1.21139 0.96820 0.98204 0.94915 1.21823 1.00870 1.00314 0.97392 1.21562 0.95522 1.00094 0.97557 1.21530 1.01413 0.97904 0.94010 1.19799 1.05544 0.93829 0.96480 1.20910 0.96139 0.99850 0.91854 1.21237 1.09430 0.94086 1.00816 1.19689 0.94064 0.91991 0.87135 1.83517 1.71237 1.36324 1.24195 1.20696 1.37769 0.91420 0.97635 0.90221 1.25295 0.94852 1.04943 0.93867 1.69729 1.39129 1.38016 1.09537 0.85208 0.79589 0.77926 0.77931 1.19044 1.19182 1.18734 1.20547 1.07898 1.00075 0.92575 1.20824 0.95695 0.93865 0.96198 0.92476 0.92879 0.91583 0.83878 0.90580 0.95716 0.90848 0.92770 0.92469 0.92053 0.92389 0.91801 0.92268 0.92860 0.92654 0.92008 0.91454 0.91326 0.92247 0.85024 0.87502 0.90575 0.85451 0.83122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.39 71.98 0.68 -1.99 16 2 C 0.14 3.25 2.82 44.17 0.12 3.37 16 3 H 0.05 1.07 7.66 -2.39 -0.02 1.05 16 4 N -0.68 -13.68 5.69 -495.47 -2.82 -16.50 16 5 C 0.06 1.07 4.94 86.30 0.43 1.50 16 6 C -0.08 -1.11 2.40 -10.80 -0.03 -1.14 16 7 C -0.12 -1.83 4.97 30.59 0.15 -1.68 16 8 C -0.11 -1.59 5.20 30.59 0.16 -1.43 16 9 C -0.09 -1.15 2.72 -10.80 -0.03 -1.18 16 10 C -0.15 -1.62 9.19 71.98 0.66 -0.95 16 11 C -0.11 -1.26 5.20 30.61 0.16 -1.10 16 12 C -0.11 -1.36 5.21 30.61 0.16 -1.20 16 13 C -0.16 -4.62 4.72 -19.84 -0.09 -4.71 16 14 C -0.07 -2.39 9.66 22.25 0.21 -2.18 16 15 C -0.24 -10.46 9.17 22.39 0.21 -10.25 16 16 C 0.12 5.66 6.65 22.58 0.15 5.81 16 17 O -0.25 -13.45 8.59 -22.72 -0.20 -13.65 16 18 C -0.40 -23.73 9.95 67.92 0.68 -23.06 16 19 H 0.08 4.97 5.44 -2.91 -0.02 4.95 16 20 C 0.01 0.51 5.49 84.83 0.47 0.97 16 21 N -0.92 -55.54 13.96 21.61 0.30 -55.24 16 22 Si 0.97 45.80 28.62 68.60 1.96 47.76 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 25 H -0.26 -12.39 7.11 99.48 0.71 -11.69 16 26 C -0.19 -7.36 9.99 22.39 0.22 -7.14 16 27 C -0.05 -1.47 9.00 22.25 0.20 -1.27 16 28 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.07 1.15 7.45 -2.38 -0.02 1.13 16 31 H 0.34 7.31 6.24 -89.69 -0.56 6.75 16 32 H 0.08 1.19 7.44 -2.39 -0.02 1.17 16 33 H 0.02 0.43 8.06 -2.39 -0.02 0.41 16 34 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 35 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.06 1.00 6.68 -2.39 -0.02 0.99 16 37 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 40 H 0.06 0.57 8.14 -2.39 -0.02 0.56 16 41 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 45 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 46 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 47 H 0.13 3.87 8.03 -2.91 -0.02 3.85 16 48 H 0.11 5.22 5.64 -2.91 -0.02 5.20 16 49 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 50 H 0.13 4.55 8.06 -2.91 -0.02 4.52 16 51 H 0.15 3.85 7.71 -2.91 -0.02 3.82 16 Total: -1.00 -63.14 395.54 4.09 -59.05 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: 0.33 Total: 26.19 kcal Atomic # 6 Polarization: -52.13 SS G_CDS: 4.51 Total: -47.63 kcal Atomic # 7 Polarization: -69.22 SS G_CDS: -2.52 Total: -71.74 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.20 Total: -13.65 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.96 Total: 47.76 kcal Total: -63.14 4.09 -59.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063144711.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.072 kcal (2) G-P(sol) polarization free energy of solvation -63.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds