Wall clock time and date at job start Tue Mar 31 2020 11:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47451 * 2 1 4 4 N 1.46907 * 109.47104 * 119.99261 * 2 1 3 5 5 C 1.46898 * 110.99975 * 275.00399 * 4 2 1 6 6 C 1.53003 * 109.46827 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.47080 * 294.99291 * 6 5 4 8 8 C 1.52993 * 109.47092 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.47068 * 60.00604 * 8 7 6 10 10 C 1.53003 * 109.47262 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.46919 * 299.99882 * 9 8 7 12 12 C 1.52993 * 109.47345 * 59.99829 * 11 9 8 13 13 C 1.50700 * 109.47481 * 239.99449 * 2 1 3 14 14 C 1.38299 * 119.92789 * 279.72521 * 13 2 1 15 15 C 1.38101 * 120.06532 * 179.71776 * 14 13 2 16 16 C 1.38872 * 119.93049 * 0.55798 * 15 14 13 17 17 O 1.35760 * 120.07222 * 179.74451 * 16 15 14 18 18 C 1.34826 * 116.99987 * 174.44029 * 17 16 15 19 19 H 1.07997 * 120.00366 * 5.05047 * 18 17 16 20 20 C 1.38649 * 119.99768 * 185.05359 * 18 17 16 21 21 N 1.31561 * 119.99940 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00295 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46772 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47172 * 119.99940 * 22 20 18 25 25 H 1.48500 * 109.47104 * 240.00036 * 22 20 18 26 26 C 1.38886 * 119.86286 * 359.72046 * 16 15 14 27 27 C 1.38099 * 119.92927 * 359.97438 * 26 16 15 28 28 H 1.09000 * 109.47708 * 300.00515 * 1 2 3 29 29 H 1.08997 * 109.47254 * 60.00651 * 1 2 3 30 30 H 1.08998 * 109.47115 * 180.02562 * 1 2 3 31 31 H 1.00895 * 111.00105 * 151.04619 * 4 2 1 32 32 H 1.09000 * 109.47086 * 299.99907 * 5 4 2 33 33 H 1.08995 * 109.47686 * 59.99739 * 5 4 2 34 34 H 1.08999 * 109.47187 * 55.00189 * 6 5 4 35 35 H 1.08993 * 109.47057 * 300.00855 * 7 6 5 36 36 H 1.09005 * 109.46202 * 60.00305 * 7 6 5 37 37 H 1.09003 * 109.47696 * 300.00367 * 8 7 6 38 38 H 1.09003 * 109.47030 * 180.02562 * 8 7 6 39 39 H 1.08999 * 109.46871 * 60.00109 * 9 8 7 40 40 H 1.08997 * 109.47132 * 179.97438 * 10 9 8 41 41 H 1.09003 * 109.47209 * 300.00064 * 10 9 8 42 42 H 1.08999 * 109.46828 * 59.99854 * 10 9 8 43 43 H 1.09003 * 109.46840 * 299.99621 * 11 9 8 44 44 H 1.09001 * 109.46804 * 180.02562 * 11 9 8 45 45 H 1.09003 * 109.47221 * 179.97438 * 12 11 9 46 46 H 1.09003 * 109.47321 * 60.00087 * 12 11 9 47 47 H 1.07997 * 119.96726 * 0.02562 * 14 13 2 48 48 H 1.08001 * 120.03218 * 180.27304 * 15 14 13 49 49 H 0.97002 * 120.00074 * 179.97438 * 21 20 18 50 50 H 1.07998 * 120.03502 * 179.97438 * 26 16 15 51 51 H 1.08002 * 119.96387 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1996 5 6 2.0823 0.2228 2.3469 6 6 2.5961 -0.5325 3.5743 7 6 1.5843 -1.6097 3.9707 8 6 2.0984 -2.3654 5.1976 9 6 2.2827 -1.3868 6.3591 10 6 2.7962 -2.1426 7.5863 11 6 3.2944 -0.3096 5.9628 12 6 2.7804 0.4461 4.7359 13 6 2.0323 -0.7105 -1.2304 14 6 2.0715 -2.0926 -1.2614 15 6 2.5259 -2.7467 -2.3896 16 6 2.9547 -2.0151 -3.4893 17 8 3.4068 -2.6551 -4.5979 18 6 3.6986 -1.8909 -5.6696 19 1 3.6474 -0.8147 -5.5956 20 6 4.0644 -2.4867 -6.8670 21 7 4.1272 -3.7977 -6.9571 22 14 4.4680 -1.4281 -8.3521 23 1 4.3237 0.0053 -7.9921 24 1 5.8645 -1.6916 -8.7831 25 1 3.5372 -1.7565 -9.4617 26 6 2.9195 -0.6271 -3.4528 27 6 2.4581 0.0210 -2.3241 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 2.9172 -1.1204 1.0290 32 1 2.7587 1.0464 2.1182 33 1 1.0870 0.6166 2.5525 34 1 3.5519 -1.0007 3.3390 35 1 0.6286 -1.1414 4.2058 36 1 1.4534 -2.3071 3.1432 37 1 3.0541 -2.8337 4.9619 38 1 1.3778 -3.1331 5.4797 39 1 1.3270 -0.9186 6.5949 40 1 2.9279 -1.4453 8.4137 41 1 2.0751 -2.9098 7.8685 42 1 3.7517 -2.6112 7.3508 43 1 4.2500 -0.7779 5.7271 44 1 3.4260 0.3873 6.7905 45 1 3.5010 1.2138 4.4538 46 1 1.8247 0.9144 4.9715 47 1 1.7417 -2.6610 -0.4043 48 1 2.5521 -3.8261 -2.4148 49 1 4.3827 -4.2146 -7.7948 50 1 3.2527 -0.0554 -4.3063 51 1 2.4301 1.1003 -2.2953 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063144713.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:23 Heat of formation + Delta-G solvation = -41.861239 kcal Electronic energy + Delta-G solvation = -26054.666754 eV Core-core repulsion = 22531.764889 eV Total energy + Delta-G solvation = -3522.901865 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.44840 -39.02699 -37.42321 -35.61639 -33.37801 -32.22350 -30.94577 -30.38073 -30.05134 -27.92754 -27.10244 -25.39140 -23.77751 -22.88414 -22.21246 -21.70815 -20.64515 -20.08260 -19.71825 -17.92427 -17.02867 -16.03417 -15.45330 -15.03828 -14.78176 -14.51640 -14.47293 -14.37690 -14.24207 -13.90748 -13.68822 -13.48688 -13.22454 -12.86996 -12.77629 -12.54006 -12.34971 -12.29881 -12.25850 -11.90527 -11.71275 -11.65834 -11.55268 -11.29419 -11.21304 -11.17153 -10.92177 -10.73834 -10.61932 -10.57260 -10.41994 -10.35236 -10.13772 -10.05610 -9.32906 -8.83108 -8.30355 -8.15952 -7.16909 -6.45275 -4.04076 2.23462 2.31428 3.11642 3.13203 3.18698 3.96304 4.18045 4.42665 4.54395 4.57917 4.58631 4.83011 5.01263 5.07896 5.09679 5.16465 5.25706 5.30972 5.32419 5.35912 5.38658 5.42528 5.47369 5.55740 5.62144 5.65624 5.70868 5.72683 5.75088 5.79562 5.85337 5.89872 5.96377 5.99324 6.02621 6.05127 6.10410 6.16883 6.24680 6.33387 6.37415 6.42200 6.49633 6.74322 6.88606 7.05484 7.09048 7.28182 7.43915 7.45444 7.58146 7.84358 8.00013 9.00550 9.71214 10.72855 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.026545 B = 0.002086 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.566884 B =13420.013492 C =13779.311589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.143 3.857 3 H 0.039 0.961 4 N -0.682 5.682 5 C 0.063 3.937 6 C -0.083 4.083 7 C -0.105 4.105 8 C -0.116 4.116 9 C -0.093 4.093 10 C -0.148 4.148 11 C -0.112 4.112 12 C -0.114 4.114 13 C -0.191 4.191 14 C -0.055 4.055 15 C -0.195 4.195 16 C 0.155 3.845 17 O -0.179 6.179 18 C -0.391 4.391 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.862 5.862 22 Si 0.941 3.059 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.235 4.235 27 C -0.066 4.066 28 H 0.045 0.955 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.344 0.656 32 H 0.025 0.975 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.051 0.949 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.061 0.939 47 H 0.119 0.881 48 H 0.116 0.884 49 H 0.269 0.731 50 H 0.126 0.874 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.974 7.547 23.453 24.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.034 3.966 3 H 0.056 0.944 4 N -0.313 5.313 5 C -0.066 4.066 6 C -0.102 4.102 7 C -0.142 4.142 8 C -0.153 4.153 9 C -0.111 4.111 10 C -0.205 4.205 11 C -0.150 4.150 12 C -0.152 4.152 13 C -0.193 4.193 14 C -0.074 4.074 15 C -0.214 4.214 16 C 0.101 3.899 17 O -0.082 6.082 18 C -0.468 4.468 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.498 5.498 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.201 1.201 26 C -0.254 4.254 27 C -0.085 4.085 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.163 0.837 32 H 0.043 0.957 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.137 0.863 48 H 0.134 0.866 49 H 0.079 0.921 50 H 0.143 0.857 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.490 6.889 23.381 24.785 hybrid contribution 1.011 1.177 -1.069 1.884 sum -3.479 8.066 22.313 23.979 Atomic orbital electron populations 1.21756 0.94657 1.02219 1.00252 1.20129 0.95074 0.94393 0.87038 0.94351 1.60587 1.33582 1.32911 1.04266 1.22034 1.00258 0.93669 0.90684 1.21150 0.99299 0.96058 0.93719 1.21464 0.97706 0.97654 0.97385 1.21631 1.01212 0.97554 0.94950 1.21152 0.98902 0.96079 0.95007 1.21843 1.01127 1.00074 0.97496 1.21564 0.98663 0.97368 0.97373 1.21553 1.01109 0.97674 0.94868 1.19276 1.10063 0.93812 0.96105 1.20491 0.97090 0.93366 0.96404 1.20258 1.08374 0.99399 0.93398 1.19428 0.91104 0.90924 0.88449 1.83982 1.70733 1.35323 1.18152 1.21365 1.47227 0.90770 0.87389 0.89064 1.25291 0.96840 0.96305 0.98148 1.70050 1.44285 1.08640 1.26776 0.85651 0.78380 0.79242 0.80169 1.19137 1.20161 1.20129 1.21119 1.09867 0.94424 0.99987 1.20586 0.97031 0.98093 0.92788 0.93638 0.92811 0.92021 0.83744 0.95716 0.91310 0.91398 0.92546 0.90510 0.92155 0.92297 0.91490 0.92989 0.92824 0.92775 0.92071 0.92343 0.92262 0.92067 0.86277 0.86607 0.92082 0.85670 0.87858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.66 9.39 37.15 0.35 -1.31 16 2 C 0.14 1.92 2.82 -68.87 -0.19 1.72 16 3 H 0.04 0.51 7.66 -51.93 -0.40 0.12 16 4 N -0.68 -8.07 5.14 -107.95 -0.55 -8.63 16 5 C 0.06 0.63 4.87 -3.82 -0.02 0.61 16 6 C -0.08 -0.74 2.33 -90.62 -0.21 -0.95 16 7 C -0.10 -0.94 5.09 -26.73 -0.14 -1.07 16 8 C -0.12 -0.94 5.20 -26.73 -0.14 -1.08 16 9 C -0.09 -0.68 2.72 -90.62 -0.25 -0.93 16 10 C -0.15 -0.97 9.19 37.16 0.34 -0.63 16 11 C -0.11 -0.82 5.20 -26.74 -0.14 -0.96 16 12 C -0.11 -0.89 5.20 -26.73 -0.14 -1.03 16 13 C -0.19 -3.19 4.72 -104.58 -0.49 -3.68 16 14 C -0.05 -0.97 8.99 -39.61 -0.36 -1.33 16 15 C -0.19 -4.11 9.99 -39.40 -0.39 -4.51 16 16 C 0.15 3.74 6.65 -39.11 -0.26 3.48 16 17 O -0.18 -5.12 9.76 0.03 0.00 -5.12 16 18 C -0.39 -10.97 9.49 30.88 0.29 -10.68 16 19 H 0.09 2.38 5.20 -52.49 -0.27 2.10 16 20 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 21 N -0.86 -25.38 13.67 55.48 0.76 -24.62 16 22 Si 0.94 20.59 29.55 -169.99 -5.02 15.56 16 23 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 24 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 26 C -0.23 -5.10 9.17 -39.39 -0.36 -5.46 16 27 C -0.07 -1.21 9.66 -39.61 -0.38 -1.59 16 28 H 0.04 0.51 7.45 -51.93 -0.39 0.12 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.34 4.30 7.98 -39.29 -0.31 3.98 16 32 H 0.02 0.26 8.06 -51.93 -0.42 -0.16 16 33 H 0.07 0.69 7.44 -51.93 -0.39 0.31 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.79 7.75 -51.93 -0.40 0.39 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.12 1.86 7.70 -52.49 -0.40 1.46 16 48 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 49 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 50 H 0.13 2.74 5.64 -52.49 -0.30 2.45 16 51 H 0.10 1.63 8.03 -52.49 -0.42 1.21 16 LS Contribution 398.90 15.07 6.01 6.01 Total: -1.00 -28.99 398.90 -10.57 -39.56 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -9.18 Total: 5.64 kcal Atomic # 6 Polarization: -25.83 SS G_CDS: -2.58 Total: -28.41 kcal Atomic # 7 Polarization: -33.45 SS G_CDS: 0.20 Total: -33.25 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: 0.00 Total: -5.12 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -28.99 -10.57 -39.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063144713.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.301 kcal (2) G-P(sol) polarization free energy of solvation -28.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds