Wall clock time and date at job start Tue Mar 31 2020 11:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47451 * 2 1 4 4 N 1.46907 * 109.47104 * 119.99261 * 2 1 3 5 5 C 1.46898 * 110.99975 * 275.00399 * 4 2 1 6 6 C 1.53003 * 109.46827 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.47080 * 294.99291 * 6 5 4 8 8 C 1.52993 * 109.47092 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.47068 * 60.00604 * 8 7 6 10 10 C 1.53003 * 109.47262 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.46919 * 299.99882 * 9 8 7 12 12 C 1.52993 * 109.47345 * 59.99829 * 11 9 8 13 13 C 1.50700 * 109.47481 * 239.99449 * 2 1 3 14 14 C 1.38299 * 119.92789 * 279.72521 * 13 2 1 15 15 C 1.38101 * 120.06532 * 179.71776 * 14 13 2 16 16 C 1.38872 * 119.93049 * 0.55798 * 15 14 13 17 17 O 1.35760 * 120.07222 * 179.74451 * 16 15 14 18 18 C 1.34826 * 116.99987 * 174.44029 * 17 16 15 19 19 H 1.07997 * 120.00366 * 5.05047 * 18 17 16 20 20 C 1.38649 * 119.99768 * 185.05359 * 18 17 16 21 21 N 1.31561 * 119.99940 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00295 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46772 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47172 * 119.99940 * 22 20 18 25 25 H 1.48500 * 109.47104 * 240.00036 * 22 20 18 26 26 C 1.38886 * 119.86286 * 359.72046 * 16 15 14 27 27 C 1.38099 * 119.92927 * 359.97438 * 26 16 15 28 28 H 1.09000 * 109.47708 * 300.00515 * 1 2 3 29 29 H 1.08997 * 109.47254 * 60.00651 * 1 2 3 30 30 H 1.08998 * 109.47115 * 180.02562 * 1 2 3 31 31 H 1.00895 * 111.00105 * 151.04619 * 4 2 1 32 32 H 1.09000 * 109.47086 * 299.99907 * 5 4 2 33 33 H 1.08995 * 109.47686 * 59.99739 * 5 4 2 34 34 H 1.08999 * 109.47187 * 55.00189 * 6 5 4 35 35 H 1.08993 * 109.47057 * 300.00855 * 7 6 5 36 36 H 1.09005 * 109.46202 * 60.00305 * 7 6 5 37 37 H 1.09003 * 109.47696 * 300.00367 * 8 7 6 38 38 H 1.09003 * 109.47030 * 180.02562 * 8 7 6 39 39 H 1.08999 * 109.46871 * 60.00109 * 9 8 7 40 40 H 1.08997 * 109.47132 * 179.97438 * 10 9 8 41 41 H 1.09003 * 109.47209 * 300.00064 * 10 9 8 42 42 H 1.08999 * 109.46828 * 59.99854 * 10 9 8 43 43 H 1.09003 * 109.46840 * 299.99621 * 11 9 8 44 44 H 1.09001 * 109.46804 * 180.02562 * 11 9 8 45 45 H 1.09003 * 109.47221 * 179.97438 * 12 11 9 46 46 H 1.09003 * 109.47321 * 60.00087 * 12 11 9 47 47 H 1.07997 * 119.96726 * 0.02562 * 14 13 2 48 48 H 1.08001 * 120.03218 * 180.27304 * 15 14 13 49 49 H 0.97002 * 120.00074 * 179.97438 * 21 20 18 50 50 H 1.07998 * 120.03502 * 179.97438 * 26 16 15 51 51 H 1.08002 * 119.96387 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1996 5 6 2.0823 0.2228 2.3469 6 6 2.5961 -0.5325 3.5743 7 6 1.5843 -1.6097 3.9707 8 6 2.0984 -2.3654 5.1976 9 6 2.2827 -1.3868 6.3591 10 6 2.7962 -2.1426 7.5863 11 6 3.2944 -0.3096 5.9628 12 6 2.7804 0.4461 4.7359 13 6 2.0323 -0.7105 -1.2304 14 6 2.0715 -2.0926 -1.2614 15 6 2.5259 -2.7467 -2.3896 16 6 2.9547 -2.0151 -3.4893 17 8 3.4068 -2.6551 -4.5979 18 6 3.6986 -1.8909 -5.6696 19 1 3.6474 -0.8147 -5.5956 20 6 4.0644 -2.4867 -6.8670 21 7 4.1272 -3.7977 -6.9571 22 14 4.4680 -1.4281 -8.3521 23 1 4.3237 0.0053 -7.9921 24 1 5.8645 -1.6916 -8.7831 25 1 3.5372 -1.7565 -9.4617 26 6 2.9195 -0.6271 -3.4528 27 6 2.4581 0.0210 -2.3241 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 2.9172 -1.1204 1.0290 32 1 2.7587 1.0464 2.1182 33 1 1.0870 0.6166 2.5525 34 1 3.5519 -1.0007 3.3390 35 1 0.6286 -1.1414 4.2058 36 1 1.4534 -2.3071 3.1432 37 1 3.0541 -2.8337 4.9619 38 1 1.3778 -3.1331 5.4797 39 1 1.3270 -0.9186 6.5949 40 1 2.9279 -1.4453 8.4137 41 1 2.0751 -2.9098 7.8685 42 1 3.7517 -2.6112 7.3508 43 1 4.2500 -0.7779 5.7271 44 1 3.4260 0.3873 6.7905 45 1 3.5010 1.2138 4.4538 46 1 1.8247 0.9144 4.9715 47 1 1.7417 -2.6610 -0.4043 48 1 2.5521 -3.8261 -2.4148 49 1 4.3827 -4.2146 -7.7948 50 1 3.2527 -0.0554 -4.3063 51 1 2.4301 1.1003 -2.2953 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063144713.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:22 Heat of formation + Delta-G solvation = -56.077280 kcal Electronic energy + Delta-G solvation = -26055.283208 eV Core-core repulsion = 22531.764889 eV Total energy + Delta-G solvation = -3523.518319 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -40.89512 -39.98129 -38.89261 -36.86309 -34.48025 -33.99068 -31.86489 -31.58939 -31.22385 -29.36022 -27.83995 -27.35536 -24.66464 -23.83934 -23.51302 -23.02152 -21.40038 -21.26761 -20.54614 -19.75357 -18.83142 -17.16274 -16.67673 -16.31461 -15.98809 -15.72250 -15.57197 -15.49544 -15.28768 -15.05696 -14.96850 -14.80688 -14.41081 -14.13259 -13.94012 -13.73650 -13.50390 -13.44448 -13.14224 -12.99350 -12.94890 -12.73315 -12.68039 -12.42364 -12.27766 -12.14101 -12.10843 -12.02867 -11.85771 -11.67514 -11.48602 -11.25587 -11.17639 -10.85166 -10.78096 -10.74566 -9.77195 -9.25910 -8.90789 -8.47641 -6.15714 0.60429 0.68872 1.34317 1.42680 1.52674 2.17038 2.81276 3.14143 3.28331 3.52794 3.77290 3.90410 3.92649 3.94658 4.10509 4.18968 4.23023 4.34524 4.40966 4.46900 4.60056 4.61858 4.65886 4.67357 4.72373 4.75370 4.76141 4.79491 4.88171 4.92986 4.98240 5.02465 5.08059 5.09548 5.13891 5.16742 5.19306 5.27168 5.30291 5.33895 5.37355 5.45101 5.49348 5.53051 5.58447 5.64181 5.70189 5.71630 5.75693 6.02898 6.21360 6.28557 6.52505 6.97200 7.78684 8.75865 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.026545 B = 0.002086 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.566884 B =13420.013492 C =13779.311589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.147 3.853 3 H 0.051 0.949 4 N -0.682 5.682 5 C 0.066 3.934 6 C -0.078 4.078 7 C -0.100 4.100 8 C -0.114 4.114 9 C -0.091 4.091 10 C -0.147 4.147 11 C -0.111 4.111 12 C -0.111 4.111 13 C -0.163 4.163 14 C -0.044 4.044 15 C -0.205 4.205 16 C 0.113 3.887 17 O -0.233 6.233 18 C -0.412 4.412 19 H 0.101 0.899 20 C -0.025 4.025 21 N -0.921 5.921 22 Si 1.019 2.981 23 H -0.251 1.251 24 H -0.268 1.268 25 H -0.268 1.268 26 C -0.242 4.242 27 C -0.065 4.065 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.341 0.659 32 H 0.027 0.973 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.051 0.949 43 H 0.056 0.944 44 H 0.067 0.933 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.146 0.854 48 H 0.111 0.889 49 H 0.272 0.728 50 H 0.117 0.883 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.784 10.203 25.765 28.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.037 3.963 3 H 0.069 0.931 4 N -0.314 5.314 5 C -0.063 4.063 6 C -0.097 4.097 7 C -0.138 4.138 8 C -0.152 4.152 9 C -0.110 4.110 10 C -0.204 4.204 11 C -0.148 4.148 12 C -0.149 4.149 13 C -0.164 4.164 14 C -0.062 4.062 15 C -0.225 4.225 16 C 0.063 3.937 17 O -0.140 6.140 18 C -0.488 4.488 19 H 0.119 0.881 20 C -0.222 4.222 21 N -0.559 5.559 22 Si 0.838 3.162 23 H -0.175 1.175 24 H -0.193 1.193 25 H -0.193 1.193 26 C -0.262 4.262 27 C -0.083 4.083 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.159 0.841 32 H 0.045 0.955 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.085 0.915 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.163 0.837 48 H 0.129 0.871 49 H 0.081 0.919 50 H 0.135 0.865 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.322 9.574 25.756 27.989 hybrid contribution 1.137 0.425 -1.414 1.863 sum -4.184 9.999 24.343 26.647 Atomic orbital electron populations 1.21725 0.93579 1.02023 1.01291 1.20144 0.95770 0.94507 0.85843 0.93110 1.60602 1.33448 1.33254 1.04069 1.22060 1.00676 0.93389 0.90133 1.21093 0.98723 0.96134 0.93765 1.21401 0.97811 0.97401 0.97174 1.21608 1.00843 0.97723 0.95022 1.21135 0.99023 0.95918 0.94880 1.21830 1.01004 1.00211 0.97388 1.21555 0.98342 0.97443 0.97492 1.21523 1.01461 0.97413 0.94467 1.19758 1.06318 0.93489 0.96802 1.20754 0.95612 0.94126 0.95750 1.20488 1.08646 0.99489 0.93841 1.19956 0.92929 0.92448 0.88354 1.83946 1.73706 1.36773 1.19573 1.21849 1.47559 0.91425 0.88014 0.88149 1.26601 0.96473 0.97808 1.01312 1.70195 1.46924 1.10892 1.27915 0.84522 0.78340 0.77797 0.75492 1.17482 1.19329 1.19337 1.21212 1.10301 0.93488 1.01158 1.20938 0.95793 0.99896 0.91710 0.91641 0.92850 0.92855 0.84101 0.95482 0.90765 0.92206 0.92466 0.91983 0.92775 0.92222 0.91359 0.92300 0.92646 0.93025 0.92554 0.91469 0.91981 0.91612 0.83664 0.87123 0.91859 0.86494 0.84491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.39 71.98 0.68 -2.08 16 2 C 0.15 3.38 2.82 44.17 0.12 3.51 16 3 H 0.05 1.11 7.66 -2.38 -0.02 1.09 16 4 N -0.68 -13.99 5.14 -495.45 -2.55 -16.54 16 5 C 0.07 1.11 4.87 86.30 0.42 1.53 16 6 C -0.08 -1.20 2.33 -10.79 -0.03 -1.22 16 7 C -0.10 -1.59 5.09 30.59 0.16 -1.44 16 8 C -0.11 -1.67 5.20 30.59 0.16 -1.51 16 9 C -0.09 -1.14 2.72 -10.79 -0.03 -1.17 16 10 C -0.15 -1.66 9.19 71.98 0.66 -1.00 16 11 C -0.11 -1.37 5.20 30.59 0.16 -1.21 16 12 C -0.11 -1.43 5.20 30.59 0.16 -1.27 16 13 C -0.16 -4.99 4.72 -19.84 -0.09 -5.08 16 14 C -0.04 -1.49 8.99 22.25 0.20 -1.29 16 15 C -0.21 -8.85 9.99 22.39 0.22 -8.63 16 16 C 0.11 5.71 6.65 22.58 0.15 5.86 16 17 O -0.23 -14.22 9.76 -22.81 -0.22 -14.44 16 18 C -0.41 -24.26 9.49 67.92 0.64 -23.62 16 19 H 0.10 5.43 5.20 -2.91 -0.02 5.42 16 20 C -0.02 -1.42 5.49 84.83 0.47 -0.95 16 21 N -0.92 -57.06 13.67 21.61 0.30 -56.76 16 22 Si 1.02 43.21 29.55 68.60 2.03 45.24 16 23 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 24 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 25 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 26 C -0.24 -10.61 9.17 22.39 0.21 -10.40 16 27 C -0.06 -2.23 9.66 22.25 0.21 -2.01 16 28 H 0.06 1.18 7.45 -2.39 -0.02 1.17 16 29 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.34 7.55 7.98 -89.70 -0.72 6.83 16 32 H 0.03 0.46 8.06 -2.39 -0.02 0.44 16 33 H 0.07 1.20 7.44 -2.39 -0.02 1.19 16 34 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.06 1.17 7.75 -2.38 -0.02 1.15 16 37 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.15 4.18 7.70 -2.91 -0.02 4.15 16 48 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 49 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 50 H 0.12 5.23 5.64 -2.91 -0.02 5.21 16 51 H 0.14 3.80 8.03 -2.91 -0.02 3.78 16 Total: -1.00 -66.90 398.90 4.20 -62.70 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: 0.17 Total: 31.79 kcal Atomic # 6 Polarization: -56.46 SS G_CDS: 4.47 Total: -51.98 kcal Atomic # 7 Polarization: -71.05 SS G_CDS: -2.25 Total: -73.30 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.22 Total: -14.44 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -66.90 4.20 -62.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063144713.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.621 kcal (2) G-P(sol) polarization free energy of solvation -66.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds