Wall clock time and date at job start Tue Mar 31 2020 11:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 110.01434 * 2 1 4 4 N 1.46900 * 109.47078 * 58.61234 * 3 2 1 5 5 C 1.46896 * 111.00195 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.47382 * 179.97438 * 5 4 3 7 7 C 1.38284 * 119.97210 * 269.97968 * 6 5 4 8 8 C 1.38248 * 120.10693 * 179.97438 * 7 6 5 9 9 C 1.38159 * 120.05905 * 359.77143 * 8 7 6 10 10 C 1.38710 * 119.94311 * 0.52499 * 9 8 7 11 11 O 1.35900 * 120.05544 * 179.72143 * 10 9 8 12 12 C 1.42898 * 117.00172 * 359.72769 * 11 10 9 13 13 C 1.52997 * 109.47319 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47466 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99890 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99563 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46838 * 89.99826 * 18 16 14 20 20 H 1.48497 * 109.47419 * 209.99978 * 18 16 14 21 21 H 1.48499 * 109.47011 * 330.00539 * 18 16 14 22 22 C 1.38129 * 119.97079 * 90.00085 * 6 5 4 23 23 C 1.54266 * 110.07852 * 121.42127 * 2 1 3 24 24 C 1.54885 * 104.19728 * 95.69603 * 23 2 1 25 25 C 1.54893 * 102.74955 * 37.94241 * 24 23 2 26 26 C 1.53873 * 110.03215 * 238.61337 * 2 1 3 27 27 H 1.09000 * 109.47919 * 60.69664 * 1 2 3 28 28 H 1.09006 * 109.46988 * 180.70251 * 1 2 3 29 29 H 1.09004 * 109.46988 * 300.69356 * 1 2 3 30 30 H 1.08996 * 109.47046 * 298.60903 * 3 2 1 31 31 H 1.09006 * 109.46798 * 178.61172 * 3 2 1 32 32 H 1.00901 * 111.00271 * 303.95429 * 4 3 2 33 33 H 1.09005 * 109.46944 * 59.99947 * 5 4 3 34 34 H 1.09002 * 109.47398 * 300.00389 * 5 4 3 35 35 H 1.07994 * 119.94418 * 0.02562 * 7 6 5 36 36 H 1.08006 * 119.97010 * 180.02562 * 8 7 6 37 37 H 1.08006 * 120.03137 * 180.24811 * 9 8 7 38 38 H 1.09002 * 109.47259 * 300.00149 * 12 11 10 39 39 H 1.09001 * 109.47074 * 60.00171 * 12 11 10 40 40 H 1.09002 * 109.47153 * 300.00307 * 13 12 11 41 41 H 1.08998 * 109.47533 * 59.99936 * 13 12 11 42 42 H 0.97002 * 119.99731 * 180.02562 * 17 16 14 43 43 H 1.07998 * 120.02418 * 0.02613 * 22 6 5 44 44 H 1.08997 * 110.48734 * 214.37667 * 23 2 1 45 45 H 1.08998 * 110.48404 * 337.01473 * 23 2 1 46 46 H 1.09007 * 110.75727 * 279.63213 * 24 23 2 47 47 H 1.09000 * 110.75655 * 156.25601 * 24 23 2 48 48 H 1.08990 * 110.48710 * 203.38196 * 25 24 23 49 49 H 1.09007 * 110.59444 * 80.79054 * 25 24 23 50 50 H 1.09008 * 110.03236 * 359.94766 * 26 2 1 51 51 H 1.09000 * 110.03340 * 121.32514 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0536 1.4377 0.0000 4 7 1.5434 2.1446 1.1823 5 6 2.0273 3.5312 1.2161 6 6 1.4841 4.2231 2.4397 7 6 0.2749 4.8911 2.3760 8 6 -0.2263 5.5264 3.4969 9 6 0.4778 5.4914 4.6851 10 6 1.6938 4.8273 4.7499 11 8 2.3910 4.7962 5.9160 12 6 1.8151 5.4739 7.0345 13 6 2.7360 5.3297 8.2478 14 6 2.1283 6.0438 9.4275 15 1 1.1799 6.5496 9.3226 16 6 2.7826 6.0506 10.6411 17 7 3.9374 5.4342 10.7690 18 14 2.0297 6.9364 12.1033 19 1 1.1616 5.9970 12.8577 20 1 3.1111 7.4331 12.9916 21 1 1.2178 8.0832 11.6228 22 6 2.1946 4.1900 3.6237 23 6 2.0596 -0.7554 1.2364 24 6 2.3299 -2.1897 0.7183 25 6 2.8885 -1.9396 -0.7046 26 6 2.0570 -0.7529 -1.2341 27 1 -0.3635 0.5029 -0.8961 28 1 -0.3633 -1.0277 0.0126 29 1 -0.3633 0.5246 0.8837 30 1 1.7156 1.9474 -0.9022 31 1 3.1433 1.4274 0.0249 32 1 0.5355 2.1121 1.2161 33 1 1.6894 4.0558 0.3224 34 1 3.1168 3.5352 1.2496 35 1 -0.2791 4.9157 1.4493 36 1 -1.1712 6.0471 3.4447 37 1 0.0838 5.9844 5.5615 38 1 1.6916 6.5301 6.7952 39 1 0.8429 5.0370 7.2629 40 1 2.8591 4.2734 8.4869 41 1 3.7084 5.7662 8.0198 42 1 4.3975 5.4387 11.6229 43 1 3.1392 3.6689 3.6727 44 1 2.9820 -0.2994 1.5959 45 1 1.3076 -0.7701 2.0254 46 1 1.4053 -2.7654 0.6746 47 1 3.0701 -2.6922 1.3410 48 1 2.7414 -2.8185 -1.3321 49 1 3.9452 -1.6756 -0.6608 50 1 1.2228 -1.1191 -1.8326 51 1 2.6851 -0.0939 -1.8335 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066594377.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:56 Heat of formation + Delta-G solvation = -47.699876 kcal Electronic energy + Delta-G solvation = -25627.340117 eV Core-core repulsion = 22104.185070 eV Total energy + Delta-G solvation = -3523.155047 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.87060 -39.43371 -37.50255 -35.53091 -33.36816 -32.20730 -30.86217 -30.24644 -29.11260 -28.96884 -26.90677 -25.49178 -24.78282 -23.19915 -22.32956 -21.60690 -20.88586 -20.16473 -18.90019 -17.60241 -16.46268 -16.13610 -15.88961 -15.62359 -15.55038 -15.29177 -14.85125 -14.63364 -14.52751 -14.34789 -13.90926 -13.70743 -13.08960 -12.99740 -12.84640 -12.72915 -12.50215 -12.30918 -12.14236 -11.78052 -11.48955 -11.38856 -11.36474 -11.24938 -11.19108 -10.93443 -10.85878 -10.77052 -10.73753 -10.68863 -10.61980 -10.39563 -9.84514 -9.64744 -9.28988 -8.76330 -8.53422 -8.43904 -7.82150 -6.09474 -4.14077 1.46806 1.69623 3.27908 3.33767 3.36620 3.76792 3.87024 4.16629 4.35081 4.37010 4.41710 4.49267 4.80114 4.92394 4.98467 5.02248 5.09027 5.12341 5.17056 5.26842 5.27614 5.29457 5.37307 5.43488 5.45722 5.48236 5.54497 5.58020 5.60551 5.71084 5.72863 5.81500 5.85505 5.87652 5.91700 6.05127 6.07050 6.08245 6.19011 6.21397 6.23646 6.56515 6.59144 6.69670 6.74879 6.78872 7.01737 7.19334 7.52259 7.65540 7.82732 8.08683 8.24986 8.91497 9.50093 11.02086 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017960 B = 0.002045 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.647118 B =13691.692463 C =14703.262630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.064 4.064 3 C 0.071 3.929 4 N -0.681 5.681 5 C 0.102 3.898 6 C -0.051 4.051 7 C -0.167 4.167 8 C -0.081 4.081 9 C -0.211 4.211 10 C 0.145 3.855 11 O -0.315 6.315 12 C 0.065 3.935 13 C 0.025 3.975 14 C -0.526 4.526 15 H 0.058 0.942 16 C 0.060 3.940 17 N -0.889 5.889 18 Si 0.899 3.101 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.273 1.273 22 C -0.138 4.138 23 C -0.101 4.101 24 C -0.129 4.129 25 C -0.124 4.124 26 C -0.116 4.116 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.026 0.974 31 H 0.073 0.927 32 H 0.342 0.658 33 H 0.037 0.963 34 H 0.080 0.920 35 H 0.113 0.887 36 H 0.119 0.881 37 H 0.129 0.871 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.263 0.737 43 H 0.128 0.872 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.063 0.937 47 H 0.064 0.936 48 H 0.060 0.940 49 H 0.064 0.936 50 H 0.063 0.937 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.347 -10.378 -26.259 28.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.064 4.064 3 C -0.058 4.058 4 N -0.313 5.313 5 C -0.026 4.026 6 C -0.051 4.051 7 C -0.186 4.186 8 C -0.099 4.099 9 C -0.230 4.230 10 C 0.098 3.902 11 O -0.228 6.228 12 C -0.009 4.009 13 C -0.012 4.012 14 C -0.564 4.564 15 H 0.076 0.924 16 C -0.142 4.142 17 N -0.527 5.527 18 Si 0.726 3.274 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.198 1.198 22 C -0.157 4.157 23 C -0.138 4.138 24 C -0.167 4.167 25 C -0.162 4.162 26 C -0.154 4.154 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.044 0.956 31 H 0.091 0.909 32 H 0.162 0.838 33 H 0.055 0.945 34 H 0.099 0.901 35 H 0.131 0.869 36 H 0.137 0.863 37 H 0.147 0.853 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.073 0.927 43 H 0.146 0.854 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.081 0.919 47 H 0.083 0.917 48 H 0.079 0.921 49 H 0.083 0.917 50 H 0.082 0.918 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.509 -10.729 -25.663 28.356 hybrid contribution -1.150 1.072 0.247 1.592 sum -6.660 -9.657 -25.416 27.993 Atomic orbital electron populations 1.21936 0.94609 1.01909 1.01490 1.21204 0.95419 0.94223 0.95567 1.22102 1.00064 0.93031 0.90602 1.60488 1.15663 1.13816 1.41345 1.20829 1.00363 0.87603 0.93806 1.19385 0.94503 0.97063 0.94170 1.20759 0.96836 1.02457 0.98572 1.20833 0.98928 0.97887 0.92234 1.21387 0.96500 1.05389 0.99757 1.19205 0.90474 0.93442 0.87106 1.86178 1.47523 1.71729 1.17411 1.23321 0.98497 0.94512 0.84533 1.19123 0.94802 0.98643 0.88638 1.20969 1.06503 1.34376 0.94591 0.92384 1.24997 0.94867 0.95466 0.98913 1.69980 1.14863 1.42615 1.25267 0.86484 0.78822 0.79877 0.82177 1.20493 1.21049 1.19782 1.20258 1.01975 1.03025 0.90475 1.22314 1.01531 0.93682 0.96322 1.22545 1.00540 0.97547 0.96034 1.22339 0.99507 0.97711 0.96603 1.22246 0.99418 0.96877 0.96834 0.93130 0.92449 0.92098 0.95566 0.90884 0.83814 0.94522 0.90121 0.86890 0.86288 0.85305 0.93181 0.93163 0.95378 0.95395 0.92710 0.85391 0.91044 0.91433 0.91867 0.91739 0.92074 0.91728 0.91792 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 7.80 37.15 0.29 -0.71 16 2 C -0.06 -0.47 0.74 -153.39 -0.11 -0.59 16 3 C 0.07 0.57 4.29 -3.82 -0.02 0.55 16 4 N -0.68 -6.48 6.15 -115.06 -0.71 -7.19 16 5 C 0.10 1.03 5.81 -4.98 -0.03 1.00 16 6 C -0.05 -0.64 5.39 -104.65 -0.56 -1.21 16 7 C -0.17 -2.02 9.70 -39.56 -0.38 -2.41 16 8 C -0.08 -1.06 10.04 -39.61 -0.40 -1.46 16 9 C -0.21 -3.35 9.04 -39.44 -0.36 -3.71 16 10 C 0.14 2.57 6.69 -39.22 -0.26 2.31 16 11 O -0.32 -6.64 10.14 -19.43 -0.20 -6.83 16 12 C 0.07 1.42 4.68 37.16 0.17 1.60 16 13 C 0.03 0.66 5.34 -27.89 -0.15 0.52 16 14 C -0.53 -14.78 9.11 -34.44 -0.31 -15.09 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -26.61 13.29 55.43 0.74 -25.88 16 18 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 C -0.14 -2.14 9.64 -39.43 -0.38 -2.52 16 23 C -0.10 -0.86 5.61 -25.07 -0.14 -1.00 16 24 C -0.13 -0.96 6.91 -24.74 -0.17 -1.13 16 25 C -0.12 -0.83 6.83 -25.07 -0.17 -1.00 16 26 C -0.12 -0.77 6.11 -25.61 -0.16 -0.92 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.46 6.57 -51.93 -0.34 0.12 16 30 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 32 H 0.34 3.16 6.75 -39.29 -0.27 2.89 16 33 H 0.04 0.33 8.08 -51.93 -0.42 -0.09 16 34 H 0.08 0.81 8.09 -51.93 -0.42 0.39 16 35 H 0.11 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 37 H 0.13 2.02 6.30 -52.48 -0.33 1.69 16 38 H 0.05 1.04 7.67 -51.93 -0.40 0.64 16 39 H 0.05 1.04 7.65 -51.93 -0.40 0.65 16 40 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.13 1.94 8.06 -52.49 -0.42 1.52 16 44 H 0.07 0.70 7.84 -51.93 -0.41 0.29 16 45 H 0.07 0.64 7.84 -51.93 -0.41 0.23 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 49 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.06 0.40 7.67 -51.92 -0.40 0.00 16 51 H 0.06 0.40 7.67 -51.93 -0.40 0.00 16 LS Contribution 403.37 15.07 6.08 6.08 Total: -1.00 -29.77 403.37 -11.57 -41.34 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -9.22 Total: 0.27 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: -3.24 Total: -24.15 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: 0.03 Total: -33.07 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -0.20 Total: -6.83 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -29.77 -11.57 -41.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066594377.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.357 kcal (2) G-P(sol) polarization free energy of solvation -29.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds