Wall clock time and date at job start Tue Mar 31 2020 11:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 110.01434 * 2 1 4 4 N 1.46900 * 109.47078 * 58.61234 * 3 2 1 5 5 C 1.46896 * 111.00195 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.47382 * 179.97438 * 5 4 3 7 7 C 1.38284 * 119.97210 * 269.97968 * 6 5 4 8 8 C 1.38248 * 120.10693 * 179.97438 * 7 6 5 9 9 C 1.38159 * 120.05905 * 359.77143 * 8 7 6 10 10 C 1.38710 * 119.94311 * 0.52499 * 9 8 7 11 11 O 1.35900 * 120.05544 * 179.72143 * 10 9 8 12 12 C 1.42898 * 117.00172 * 359.72769 * 11 10 9 13 13 C 1.52997 * 109.47319 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47466 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99890 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99563 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46838 * 89.99826 * 18 16 14 20 20 H 1.48497 * 109.47419 * 209.99978 * 18 16 14 21 21 H 1.48499 * 109.47011 * 330.00539 * 18 16 14 22 22 C 1.38129 * 119.97079 * 90.00085 * 6 5 4 23 23 C 1.54266 * 110.07852 * 121.42127 * 2 1 3 24 24 C 1.54885 * 104.19728 * 95.69603 * 23 2 1 25 25 C 1.54893 * 102.74955 * 37.94241 * 24 23 2 26 26 C 1.53873 * 110.03215 * 238.61337 * 2 1 3 27 27 H 1.09000 * 109.47919 * 60.69664 * 1 2 3 28 28 H 1.09006 * 109.46988 * 180.70251 * 1 2 3 29 29 H 1.09004 * 109.46988 * 300.69356 * 1 2 3 30 30 H 1.08996 * 109.47046 * 298.60903 * 3 2 1 31 31 H 1.09006 * 109.46798 * 178.61172 * 3 2 1 32 32 H 1.00901 * 111.00271 * 303.95429 * 4 3 2 33 33 H 1.09005 * 109.46944 * 59.99947 * 5 4 3 34 34 H 1.09002 * 109.47398 * 300.00389 * 5 4 3 35 35 H 1.07994 * 119.94418 * 0.02562 * 7 6 5 36 36 H 1.08006 * 119.97010 * 180.02562 * 8 7 6 37 37 H 1.08006 * 120.03137 * 180.24811 * 9 8 7 38 38 H 1.09002 * 109.47259 * 300.00149 * 12 11 10 39 39 H 1.09001 * 109.47074 * 60.00171 * 12 11 10 40 40 H 1.09002 * 109.47153 * 300.00307 * 13 12 11 41 41 H 1.08998 * 109.47533 * 59.99936 * 13 12 11 42 42 H 0.97002 * 119.99731 * 180.02562 * 17 16 14 43 43 H 1.07998 * 120.02418 * 0.02613 * 22 6 5 44 44 H 1.08997 * 110.48734 * 214.37667 * 23 2 1 45 45 H 1.08998 * 110.48404 * 337.01473 * 23 2 1 46 46 H 1.09007 * 110.75727 * 279.63213 * 24 23 2 47 47 H 1.09000 * 110.75655 * 156.25601 * 24 23 2 48 48 H 1.08990 * 110.48710 * 203.38196 * 25 24 23 49 49 H 1.09007 * 110.59444 * 80.79054 * 25 24 23 50 50 H 1.09008 * 110.03236 * 359.94766 * 26 2 1 51 51 H 1.09000 * 110.03340 * 121.32514 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0536 1.4377 0.0000 4 7 1.5434 2.1446 1.1823 5 6 2.0273 3.5312 1.2161 6 6 1.4841 4.2231 2.4397 7 6 0.2749 4.8911 2.3760 8 6 -0.2263 5.5264 3.4969 9 6 0.4778 5.4914 4.6851 10 6 1.6938 4.8273 4.7499 11 8 2.3910 4.7962 5.9160 12 6 1.8151 5.4739 7.0345 13 6 2.7360 5.3297 8.2478 14 6 2.1283 6.0438 9.4275 15 1 1.1799 6.5496 9.3226 16 6 2.7826 6.0506 10.6411 17 7 3.9374 5.4342 10.7690 18 14 2.0297 6.9364 12.1033 19 1 1.1616 5.9970 12.8577 20 1 3.1111 7.4331 12.9916 21 1 1.2178 8.0832 11.6228 22 6 2.1946 4.1900 3.6237 23 6 2.0596 -0.7554 1.2364 24 6 2.3299 -2.1897 0.7183 25 6 2.8885 -1.9396 -0.7046 26 6 2.0570 -0.7529 -1.2341 27 1 -0.3635 0.5029 -0.8961 28 1 -0.3633 -1.0277 0.0126 29 1 -0.3633 0.5246 0.8837 30 1 1.7156 1.9474 -0.9022 31 1 3.1433 1.4274 0.0249 32 1 0.5355 2.1121 1.2161 33 1 1.6894 4.0558 0.3224 34 1 3.1168 3.5352 1.2496 35 1 -0.2791 4.9157 1.4493 36 1 -1.1712 6.0471 3.4447 37 1 0.0838 5.9844 5.5615 38 1 1.6916 6.5301 6.7952 39 1 0.8429 5.0370 7.2629 40 1 2.8591 4.2734 8.4869 41 1 3.7084 5.7662 8.0198 42 1 4.3975 5.4387 11.6229 43 1 3.1392 3.6689 3.6727 44 1 2.9820 -0.2994 1.5959 45 1 1.3076 -0.7701 2.0254 46 1 1.4053 -2.7654 0.6746 47 1 3.0701 -2.6922 1.3410 48 1 2.7414 -2.8185 -1.3321 49 1 3.9452 -1.6756 -0.6608 50 1 1.2228 -1.1191 -1.8326 51 1 2.6851 -0.0939 -1.8335 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066594377.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:55 Heat of formation + Delta-G solvation = -62.708271 kcal Electronic energy + Delta-G solvation = -25627.990930 eV Core-core repulsion = 22104.185070 eV Total energy + Delta-G solvation = -3523.805860 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.08866 -40.13339 -38.77337 -36.38299 -35.45748 -33.01935 -32.58232 -31.24540 -30.48442 -29.56393 -27.65448 -27.01124 -26.00236 -24.01093 -23.49379 -23.22148 -21.63031 -21.39519 -19.57832 -19.04803 -18.15082 -17.19058 -16.94725 -16.89680 -16.79607 -16.46917 -16.38274 -15.58725 -15.34959 -15.14739 -14.79700 -14.45391 -14.34433 -14.33839 -14.25789 -13.87162 -13.57629 -13.32596 -13.19867 -12.98655 -12.82132 -12.60542 -12.56644 -12.47175 -12.35151 -11.95843 -11.88506 -11.81803 -11.60868 -11.57236 -11.47904 -11.40072 -11.32929 -11.29745 -11.24461 -10.63036 -9.82338 -9.30164 -9.07447 -8.27396 -6.41375 0.35482 0.54047 1.40247 1.42838 1.53974 2.27061 2.51304 2.76576 3.06787 3.37699 3.75260 3.76424 3.85725 3.87578 3.93431 4.15234 4.23231 4.25612 4.29752 4.36596 4.43471 4.45487 4.50444 4.54656 4.57030 4.67728 4.69749 4.72481 4.77343 4.86293 4.88216 4.91963 5.02246 5.04798 5.11504 5.16098 5.22404 5.27287 5.30607 5.33478 5.44843 5.45298 5.50451 5.52705 5.53875 5.61168 5.61835 5.68207 5.90447 6.06354 6.11341 6.49529 6.58056 6.73358 7.28709 8.85804 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017960 B = 0.002045 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.647118 B =13691.692463 C =14703.262630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.061 4.061 3 C 0.075 3.925 4 N -0.692 5.692 5 C 0.107 3.893 6 C -0.044 4.044 7 C -0.153 4.153 8 C -0.077 4.077 9 C -0.223 4.223 10 C 0.105 3.895 11 O -0.343 6.343 12 C 0.086 3.914 13 C 0.028 3.972 14 C -0.546 4.546 15 H 0.071 0.929 16 C 0.000 4.000 17 N -0.931 5.931 18 Si 0.978 3.022 19 H -0.270 1.270 20 H -0.281 1.281 21 H -0.259 1.259 22 C -0.152 4.152 23 C -0.102 4.102 24 C -0.129 4.129 25 C -0.123 4.123 26 C -0.113 4.113 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.039 0.961 31 H 0.066 0.934 32 H 0.346 0.654 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.126 0.874 38 H 0.060 0.940 39 H 0.059 0.941 40 H -0.003 1.003 41 H -0.002 1.002 42 H 0.267 0.733 43 H 0.119 0.881 44 H 0.053 0.947 45 H 0.053 0.947 46 H 0.067 0.933 47 H 0.060 0.940 48 H 0.071 0.929 49 H 0.061 0.939 50 H 0.072 0.928 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.767 -9.725 -28.408 31.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.061 4.061 3 C -0.054 4.054 4 N -0.325 5.325 5 C -0.021 4.021 6 C -0.045 4.045 7 C -0.171 4.171 8 C -0.095 4.095 9 C -0.242 4.242 10 C 0.060 3.940 11 O -0.258 6.258 12 C 0.011 3.989 13 C -0.009 4.009 14 C -0.584 4.584 15 H 0.089 0.911 16 C -0.199 4.199 17 N -0.570 5.570 18 Si 0.801 3.199 19 H -0.195 1.195 20 H -0.206 1.206 21 H -0.183 1.183 22 C -0.171 4.171 23 C -0.140 4.140 24 C -0.166 4.166 25 C -0.161 4.161 26 C -0.151 4.151 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.166 0.834 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.168 0.832 36 H 0.169 0.831 37 H 0.144 0.856 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.015 0.985 41 H 0.016 0.984 42 H 0.076 0.924 43 H 0.137 0.863 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.086 0.914 47 H 0.079 0.921 48 H 0.089 0.911 49 H 0.080 0.920 50 H 0.090 0.910 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.943 -10.082 -27.845 30.661 hybrid contribution -0.389 0.797 0.765 1.171 sum -8.332 -9.286 -27.081 29.816 Atomic orbital electron populations 1.21902 0.94010 1.02058 1.01652 1.21187 0.95847 0.93830 0.95280 1.22087 0.99657 0.93224 0.90419 1.60436 1.15978 1.13559 1.42532 1.20798 1.00158 0.87974 0.93200 1.19692 0.94437 0.96483 0.93859 1.21205 0.96112 1.00204 0.99604 1.21217 0.99661 0.97408 0.91225 1.21498 0.96112 1.05542 1.01087 1.19534 0.91911 0.96195 0.86382 1.86085 1.48769 1.72506 1.18448 1.22842 0.97172 0.95274 0.83587 1.18967 0.94604 0.96266 0.91090 1.21391 1.07104 1.34581 0.95291 0.91082 1.26077 0.95223 0.96164 1.02402 1.70130 1.16517 1.44046 1.26330 0.85259 0.78038 0.78852 0.77753 1.19510 1.20617 1.18270 1.20390 1.02278 1.03337 0.91134 1.22272 1.00308 0.94710 0.96677 1.22543 1.00736 0.96773 0.96590 1.22342 0.99366 0.98283 0.96082 1.22234 0.99717 0.96712 0.96421 0.92050 0.92346 0.92785 0.94262 0.91560 0.83438 0.92231 0.90534 0.83164 0.83099 0.85632 0.92223 0.92311 0.98457 0.98368 0.92428 0.86338 0.92793 0.92778 0.91430 0.92093 0.91072 0.91979 0.90952 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 7.80 71.98 0.56 -1.12 16 2 C -0.06 -0.82 0.74 -51.46 -0.04 -0.86 16 3 C 0.07 1.07 4.29 86.31 0.37 1.44 16 4 N -0.69 -12.06 6.15 -517.93 -3.19 -15.24 16 5 C 0.11 1.93 5.81 85.56 0.50 2.43 16 6 C -0.04 -1.05 5.39 -19.88 -0.11 -1.16 16 7 C -0.15 -3.16 9.70 22.28 0.22 -2.95 16 8 C -0.08 -1.81 10.04 22.25 0.22 -1.59 16 9 C -0.22 -6.97 9.04 22.36 0.20 -6.77 16 10 C 0.11 3.85 6.69 22.50 0.15 4.00 16 11 O -0.34 -15.31 10.14 -92.43 -0.94 -16.25 16 12 C 0.09 3.89 4.68 71.98 0.34 4.22 16 13 C 0.03 1.57 5.34 29.85 0.16 1.73 16 14 C -0.55 -31.34 9.11 25.60 0.23 -31.11 16 15 H 0.07 3.80 7.74 -2.91 -0.02 3.77 16 16 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 17 N -0.93 -57.45 13.29 21.45 0.28 -57.16 16 18 Si 0.98 43.95 29.54 68.60 2.03 45.98 16 19 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 20 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 21 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 22 C -0.15 -4.81 9.64 22.37 0.22 -4.60 16 23 C -0.10 -1.74 5.61 31.67 0.18 -1.56 16 24 C -0.13 -1.85 6.91 31.89 0.22 -1.63 16 25 C -0.12 -1.48 6.83 31.67 0.22 -1.27 16 26 C -0.11 -1.27 6.11 31.32 0.19 -1.08 16 27 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.05 0.73 6.57 -2.38 -0.02 0.71 16 30 H 0.04 0.47 8.14 -2.39 -0.02 0.46 16 31 H 0.07 1.04 8.12 -2.38 -0.02 1.02 16 32 H 0.35 5.60 6.75 -89.69 -0.61 4.99 16 33 H 0.06 0.84 8.08 -2.38 -0.02 0.82 16 34 H 0.08 1.46 8.09 -2.39 -0.02 1.44 16 35 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 36 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 37 H 0.13 3.90 6.30 -2.91 -0.02 3.88 16 38 H 0.06 2.54 7.67 -2.39 -0.02 2.52 16 39 H 0.06 2.52 7.65 -2.39 -0.02 2.50 16 40 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 41 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 42 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 43 H 0.12 3.84 8.06 -2.91 -0.02 3.81 16 44 H 0.05 1.09 7.84 -2.39 -0.02 1.07 16 45 H 0.05 1.04 7.84 -2.39 -0.02 1.02 16 46 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 47 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 49 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 50 H 0.07 0.71 7.67 -2.38 -0.02 0.70 16 51 H 0.07 0.71 7.67 -2.39 -0.02 0.69 16 Total: -1.00 -66.96 403.37 2.75 -64.21 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 0.27 Total: 19.86 kcal Atomic # 6 Polarization: -45.69 SS G_CDS: 4.29 Total: -41.40 kcal Atomic # 7 Polarization: -69.51 SS G_CDS: -2.90 Total: -72.41 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.94 Total: -16.25 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -66.96 2.75 -64.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066594377.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.504 kcal (2) G-P(sol) polarization free energy of solvation -66.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds