Wall clock time and date at job start Tue Mar 31 2020 11:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38228 * 120.00180 * 2 1 4 4 C 1.38246 * 120.00112 * 180.21362 * 3 2 1 5 5 C 1.38231 * 119.99432 * 359.53485 * 4 3 2 6 6 C 1.50703 * 119.99662 * 180.25841 * 5 4 3 7 7 C 1.52997 * 109.47381 * 89.99559 * 6 5 4 8 8 N 1.46902 * 109.47289 * 180.02562 * 7 6 5 9 9 C 1.46898 * 111.00076 * 188.05183 * 8 7 6 10 10 C 1.52998 * 109.46975 * 174.64347 * 9 8 7 11 11 C 1.50703 * 109.47091 * 185.19423 * 10 9 8 12 12 H 1.08000 * 119.99953 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99981 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99877 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 119.99839 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47348 * 90.00254 * 15 13 11 17 17 H 1.48504 * 109.47028 * 209.99992 * 15 13 11 18 18 H 1.48502 * 109.47412 * 330.00043 * 15 13 11 19 19 C 1.46899 * 111.00291 * 64.09543 * 8 7 6 20 20 C 1.53002 * 109.47063 * 66.37005 * 19 8 7 21 21 H 1.09005 * 109.86361 * 51.58554 * 20 19 8 22 22 C 1.54104 * 109.87776 * 172.58901 * 20 19 8 23 23 C 1.54810 * 104.18414 * 121.45809 * 22 20 19 24 24 C 1.54998 * 102.09485 * 20.88353 * 23 22 20 25 25 O 1.43737 * 109.88230 * 290.58010 * 20 19 8 26 26 C 1.38234 * 120.00470 * 0.27260 * 5 4 3 27 27 C 1.38234 * 119.99772 * 179.78805 * 2 1 3 28 28 H 1.09001 * 109.47304 * 270.20904 * 1 2 3 29 29 H 1.08998 * 109.47165 * 30.20807 * 1 2 3 30 30 H 1.09000 * 109.47497 * 150.21199 * 1 2 3 31 31 H 1.07998 * 120.00423 * 0.02562 * 3 2 1 32 32 H 1.07995 * 119.99721 * 179.80327 * 4 3 2 33 33 H 1.08994 * 109.47032 * 210.00271 * 6 5 4 34 34 H 1.09007 * 109.46492 * 329.99337 * 6 5 4 35 35 H 1.09005 * 109.47054 * 299.99923 * 7 6 5 36 36 H 1.08992 * 109.47412 * 59.99922 * 7 6 5 37 37 H 1.08998 * 109.47114 * 294.64349 * 9 8 7 38 38 H 1.09001 * 109.46708 * 54.64651 * 9 8 7 39 39 H 1.09004 * 109.47313 * 305.19399 * 10 9 8 40 40 H 1.08997 * 109.47261 * 65.19480 * 10 9 8 41 41 H 0.97002 * 119.99461 * 179.97438 * 14 13 11 42 42 H 1.08990 * 109.47531 * 186.37605 * 19 8 7 43 43 H 1.09002 * 109.47140 * 306.37922 * 19 8 7 44 44 H 1.09004 * 110.48510 * 240.13139 * 22 20 19 45 45 H 1.08991 * 110.48572 * 2.64957 * 22 20 19 46 46 H 1.09001 * 110.90521 * 139.07576 * 23 22 20 47 47 H 1.08996 * 110.90848 * 262.64808 * 23 22 20 48 48 H 1.08996 * 110.62465 * 81.47190 * 24 23 22 49 49 H 1.09007 * 110.61884 * 204.32181 * 24 23 22 50 50 H 1.07998 * 119.99823 * 179.97438 * 26 5 4 51 51 H 1.07998 * 120.00156 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5806 1.1971 -0.0045 5 6 4.2716 -0.0001 0.0008 6 6 5.7787 -0.0002 0.0018 7 6 6.2877 0.0057 1.4446 8 7 7.7568 0.0063 1.4456 9 6 8.2824 -0.1803 2.8045 10 6 9.8060 -0.3078 2.7489 11 6 10.3340 -0.6261 4.1241 12 1 9.6511 -0.7276 4.9546 13 6 11.6888 -0.7886 4.3218 14 7 12.5204 -0.6654 3.3104 15 14 12.3431 -1.1837 6.0262 16 1 12.3917 -2.6567 6.2086 17 1 13.7095 -0.6213 6.1746 18 1 11.4484 -0.5874 7.0505 19 6 8.2832 1.2377 0.8419 20 6 7.9251 2.4331 1.7273 21 1 8.2304 2.2373 2.7552 22 6 8.6275 3.7013 1.2045 23 6 7.4673 4.6821 0.9069 24 6 6.3217 4.1032 1.7757 25 8 6.5089 2.6731 1.6753 26 6 3.5805 -1.1972 0.0048 27 6 2.1981 -1.1972 0.0044 28 1 -0.3634 0.0037 1.0277 29 1 -0.3633 0.8881 -0.5170 30 1 -0.3634 -0.8919 -0.5105 31 1 1.6582 2.1324 0.0004 32 1 4.1205 2.1323 -0.0077 33 1 6.1423 -0.8921 -0.5082 34 1 6.1423 0.8878 -0.5155 35 1 5.9241 0.8978 1.9546 36 1 5.9241 -0.8821 1.9618 37 1 8.0118 0.6779 3.4197 38 1 7.8575 -1.0860 3.2372 39 1 10.0788 -1.1080 2.0609 40 1 10.2369 0.6316 2.4028 41 1 13.4736 -0.7794 3.4497 42 1 9.3669 1.1639 0.7520 43 1 7.8450 1.3738 -0.1468 44 1 9.2889 4.1128 1.9670 45 1 9.1860 3.4806 0.2950 46 1 7.7222 5.6936 1.2233 47 1 7.2027 4.6622 -0.1503 48 1 6.4221 4.4296 2.8107 49 1 5.3509 4.3950 1.3748 50 1 4.1205 -2.1325 0.0085 51 1 1.6581 -2.1324 0.0075 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075999954.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:44 Heat of formation + Delta-G solvation = -49.928704 kcal Electronic energy + Delta-G solvation = -27216.580015 eV Core-core repulsion = 23693.328319 eV Total energy + Delta-G solvation = -3523.251697 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.98401 -40.19126 -38.34316 -35.54205 -34.67777 -33.10063 -32.12059 -31.73643 -31.34053 -29.76327 -27.12177 -26.87927 -25.25500 -23.53293 -23.35266 -22.85286 -22.29076 -21.33825 -20.68178 -18.62489 -17.86706 -17.14454 -16.77652 -16.60717 -16.46385 -16.28771 -16.02169 -15.79156 -15.42670 -14.79061 -14.53888 -14.45580 -14.40906 -14.24340 -14.17984 -13.66852 -13.44712 -13.34836 -13.28308 -12.96669 -12.82846 -12.74704 -12.60188 -12.53221 -12.33452 -12.12055 -11.92651 -11.89997 -11.82369 -11.78752 -11.65957 -11.42060 -11.26199 -11.19481 -10.59905 -10.53220 -9.75150 -9.29574 -8.99682 -8.19771 -6.30319 0.49097 0.57624 1.39113 1.40476 1.51250 2.39871 2.81403 2.91446 3.13497 3.26491 3.72425 3.80064 3.93617 3.99146 4.03157 4.13297 4.17732 4.23190 4.23422 4.32094 4.39194 4.45587 4.55776 4.59049 4.63534 4.69266 4.74701 4.80856 4.82856 4.87101 4.88876 4.92964 4.97741 5.02851 5.04401 5.08259 5.12969 5.16715 5.21751 5.28185 5.34464 5.40369 5.48849 5.59743 5.68126 5.76719 5.80743 5.86171 5.99915 6.15128 6.21655 6.34718 6.37292 6.85913 7.38220 8.92081 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013670 B = 0.003186 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.722626 B = 8787.146026 C =10149.321710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.103 4.103 3 C -0.128 4.128 4 C -0.114 4.114 5 C -0.091 4.091 6 C -0.059 4.059 7 C 0.062 3.938 8 N -0.544 5.544 9 C 0.078 3.922 10 C 0.042 3.958 11 C -0.544 4.544 12 H 0.055 0.945 13 C 0.004 3.996 14 N -0.929 5.929 15 Si 0.962 3.038 16 H -0.273 1.273 17 H -0.280 1.280 18 H -0.265 1.265 19 C 0.061 3.939 20 C 0.044 3.956 21 H 0.045 0.955 22 C -0.149 4.149 23 C -0.140 4.140 24 C 0.033 3.967 25 O -0.374 6.374 26 C -0.128 4.128 27 C -0.130 4.130 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.137 0.863 32 H 0.125 0.875 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.021 0.979 38 H 0.053 0.947 39 H -0.008 1.008 40 H -0.002 1.002 41 H 0.264 0.736 42 H 0.069 0.931 43 H 0.092 0.908 44 H 0.068 0.932 45 H 0.082 0.918 46 H 0.094 0.906 47 H 0.086 0.914 48 H 0.053 0.947 49 H 0.109 0.891 50 H 0.122 0.878 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.385 8.904 -8.665 24.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.103 4.103 3 C -0.146 4.146 4 C -0.132 4.132 5 C -0.091 4.091 6 C -0.097 4.097 7 C -0.065 4.065 8 N -0.266 5.266 9 C -0.049 4.049 10 C 0.004 3.996 11 C -0.582 4.582 12 H 0.073 0.927 13 C -0.194 4.194 14 N -0.569 5.569 15 Si 0.787 3.213 16 H -0.198 1.198 17 H -0.205 1.205 18 H -0.189 1.189 19 C -0.067 4.067 20 C -0.015 4.015 21 H 0.063 0.937 22 C -0.187 4.187 23 C -0.177 4.177 24 C -0.043 4.043 25 O -0.294 6.294 26 C -0.146 4.146 27 C -0.147 4.147 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.155 0.845 32 H 0.143 0.857 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.039 0.961 38 H 0.071 0.929 39 H 0.011 0.989 40 H 0.016 0.984 41 H 0.072 0.928 42 H 0.088 0.912 43 H 0.110 0.890 44 H 0.087 0.913 45 H 0.100 0.900 46 H 0.112 0.888 47 H 0.105 0.895 48 H 0.071 0.929 49 H 0.127 0.873 50 H 0.140 0.860 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -21.218 8.314 -9.013 24.506 hybrid contribution 1.008 0.345 1.492 1.833 sum -20.209 8.659 -7.522 23.237 Atomic orbital electron populations 1.20805 0.89462 1.03565 1.02852 1.20253 0.97453 0.93006 0.99608 1.21272 0.93929 0.98413 1.01002 1.21192 0.94562 0.97714 0.99773 1.19910 0.95314 0.93738 1.00151 1.20399 0.90573 1.02562 0.96141 1.22190 0.86477 1.00778 0.97070 1.62217 1.08118 1.35659 1.20621 1.21972 0.96510 0.98441 0.88015 1.18872 0.90332 0.95126 0.95225 1.21599 0.92663 1.48318 0.95645 0.92676 1.25897 0.97342 0.95078 1.01055 1.70098 1.03279 1.50776 1.32704 0.85491 0.77635 0.78618 0.79565 1.19836 1.20534 1.18948 1.22445 1.00043 0.86131 0.98067 1.23381 0.82062 0.96922 0.99183 0.93735 1.22917 0.99014 0.94638 1.02137 1.23053 0.93918 0.99367 1.01404 1.23789 1.00313 0.80968 0.99213 1.88979 1.22055 1.23529 1.94840 1.21248 0.94857 0.97818 1.00649 1.21253 0.93861 0.98520 1.01107 0.90725 0.90627 0.90789 0.84477 0.85676 0.91546 0.90859 0.92200 0.92984 0.96073 0.92869 0.98942 0.98359 0.92758 0.91242 0.89015 0.91326 0.89970 0.88790 0.89548 0.92880 0.87282 0.85950 0.84667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 10.01 71.23 0.71 -0.69 16 2 C -0.10 -1.97 5.88 -19.87 -0.12 -2.09 16 3 C -0.13 -2.56 9.70 22.27 0.22 -2.34 16 4 C -0.11 -2.65 9.70 22.27 0.22 -2.43 16 5 C -0.09 -2.31 5.13 -19.87 -0.10 -2.41 16 6 C -0.06 -1.64 5.24 29.85 0.16 -1.49 16 7 C 0.06 2.04 4.51 86.30 0.39 2.43 16 8 N -0.54 -20.81 4.76 -896.25 -4.27 -25.08 16 9 C 0.08 3.50 4.53 86.30 0.39 3.90 16 10 C 0.04 2.27 4.62 29.85 0.14 2.41 16 11 C -0.54 -31.66 9.11 25.60 0.23 -31.43 16 12 H 0.05 3.11 7.74 -2.91 -0.02 3.09 16 13 C 0.00 0.26 5.46 84.65 0.46 0.72 16 14 N -0.93 -56.86 13.29 21.45 0.28 -56.57 16 15 Si 0.96 44.87 29.54 68.60 2.03 46.89 16 16 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 17 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 19 C 0.06 2.12 4.38 86.30 0.38 2.50 16 20 C 0.04 1.39 3.09 30.97 0.10 1.48 16 21 H 0.04 1.72 5.93 -2.38 -0.01 1.71 16 22 C -0.15 -3.80 6.64 31.59 0.21 -3.59 16 23 C -0.14 -2.62 7.16 31.90 0.23 -2.39 16 24 C 0.03 0.69 7.72 72.67 0.56 1.25 16 25 O -0.37 -10.64 8.07 -148.98 -1.20 -11.84 16 26 C -0.13 -3.07 9.70 22.27 0.22 -2.85 16 27 C -0.13 -2.68 9.70 22.27 0.22 -2.46 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.07 0.78 8.09 -2.39 -0.02 0.77 16 30 H 0.07 0.80 8.09 -2.39 -0.02 0.78 16 31 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 32 H 0.13 2.72 8.06 -2.91 -0.02 2.70 16 33 H 0.07 1.89 8.08 -2.39 -0.02 1.87 16 34 H 0.07 1.99 6.31 -2.38 -0.02 1.97 16 35 H 0.06 2.05 5.08 -2.38 -0.01 2.04 16 36 H 0.05 1.78 8.03 -2.39 -0.02 1.76 16 37 H 0.02 0.96 6.01 -2.39 -0.01 0.94 16 38 H 0.05 2.42 8.05 -2.39 -0.02 2.40 16 39 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 40 H 0.00 -0.11 6.77 -2.39 -0.02 -0.12 16 41 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 42 H 0.07 2.72 6.58 -2.39 -0.02 2.71 16 43 H 0.09 2.78 6.13 -2.39 -0.01 2.77 16 44 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 45 H 0.08 2.02 7.70 -2.39 -0.02 2.00 16 46 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 50 H 0.12 2.79 8.06 -2.91 -0.02 2.76 16 51 H 0.14 2.21 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -66.63 395.38 2.32 -64.31 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 0.88 Total: 21.77 kcal Atomic # 6 Polarization: -44.09 SS G_CDS: 4.60 Total: -39.49 kcal Atomic # 7 Polarization: -77.66 SS G_CDS: -3.98 Total: -81.65 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: -1.20 Total: -11.84 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -66.63 2.32 -64.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075999954.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.379 kcal (2) G-P(sol) polarization free energy of solvation -66.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds