Wall clock time and date at job start Tue Mar 31 2020 11:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46884 * 2 1 4 4 C 1.53000 * 112.85582 * 295.84127 * 3 2 1 5 5 N 1.46905 * 109.46691 * 304.45168 * 4 3 2 6 6 C 1.46895 * 110.99538 * 174.52860 * 5 4 3 7 7 C 1.50701 * 109.47096 * 179.97438 * 6 5 4 8 8 C 1.38287 * 119.97258 * 270.02307 * 7 6 5 9 9 C 1.38244 * 120.11203 * 179.97438 * 8 7 6 10 10 C 1.38174 * 120.05712 * 359.76649 * 9 8 7 11 11 C 1.38711 * 119.93917 * 0.48101 * 10 9 8 12 12 O 1.35898 * 120.05386 * 179.76863 * 11 10 9 13 13 C 1.42898 * 117.00114 * 359.72787 * 12 11 10 14 14 C 1.52999 * 109.47407 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.47358 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00035 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00033 * 180.02562 * 15 14 13 18 18 N 1.31521 * 120.00347 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00121 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47501 * 89.99808 * 19 17 15 21 21 H 1.48506 * 109.47389 * 210.00153 * 19 17 15 22 22 H 1.48498 * 109.47042 * 329.99837 * 19 17 15 23 23 C 1.38132 * 119.97193 * 89.99463 * 7 6 5 24 24 C 1.53784 * 113.61438 * 67.03968 * 3 2 1 25 25 C 1.53954 * 87.02001 * 89.22663 * 24 3 2 26 26 C 1.53775 * 87.11208 * 25.36125 * 25 24 3 27 27 H 1.09003 * 109.46986 * 175.99870 * 1 2 3 28 28 H 1.09000 * 109.46980 * 296.00414 * 1 2 3 29 29 H 1.08997 * 109.47241 * 55.99842 * 1 2 3 30 30 H 1.09004 * 109.46870 * 239.99992 * 2 1 3 31 31 H 1.08997 * 109.46760 * 120.00283 * 2 1 3 32 32 H 1.08996 * 109.47585 * 184.45049 * 4 3 2 33 33 H 1.09000 * 109.46791 * 64.44267 * 4 3 2 34 34 H 1.00898 * 110.99535 * 298.47639 * 5 4 3 35 35 H 1.08997 * 109.47611 * 59.99720 * 6 5 4 36 36 H 1.08998 * 109.47386 * 299.99331 * 6 5 4 37 37 H 1.07994 * 119.94440 * 359.97438 * 8 7 6 38 38 H 1.07998 * 119.97594 * 180.02562 * 9 8 7 39 39 H 1.07996 * 120.03237 * 180.25624 * 10 9 8 40 40 H 1.09001 * 109.47304 * 300.00212 * 13 12 11 41 41 H 1.08997 * 109.46788 * 60.00214 * 13 12 11 42 42 H 1.09001 * 109.47080 * 300.00371 * 14 13 12 43 43 H 1.09005 * 109.46993 * 60.00012 * 14 13 12 44 44 H 0.96999 * 120.00306 * 180.02562 * 18 17 15 45 45 H 1.07996 * 120.02358 * 0.02562 * 23 7 6 46 46 H 1.08996 * 113.61520 * 203.74243 * 24 3 2 47 47 H 1.09000 * 113.61306 * 334.64857 * 24 3 2 48 48 H 1.09005 * 113.53646 * 270.81329 * 25 24 3 49 49 H 1.09003 * 113.74817 * 139.94670 * 25 24 3 50 50 H 1.09007 * 113.61743 * 220.08745 * 26 25 24 51 51 H 1.09007 * 113.68896 * 89.19828 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6587 2.2076 -1.2689 5 7 2.1401 1.4733 -2.4467 6 6 1.6804 2.1101 -3.6880 7 6 2.1931 1.3311 -4.8719 8 6 3.4161 1.6513 -5.4324 9 6 3.8894 0.9383 -6.5181 10 6 3.1434 -0.0996 -7.0429 11 6 1.9140 -0.4194 -6.4857 12 8 1.1762 -1.4367 -7.0030 13 6 1.7250 -2.1308 -8.1250 14 6 0.7600 -3.2339 -8.5642 15 6 1.3385 -3.9655 -9.7479 16 1 2.2987 -3.6733 -10.1468 17 6 0.6421 -5.0079 -10.3216 18 7 -0.5274 -5.3635 -9.8363 19 14 1.3594 -5.9152 -11.7884 20 1 2.1826 -7.0553 -11.3111 21 1 0.2569 -6.4244 -12.6432 22 1 2.2091 -4.9873 -12.5772 23 6 1.4413 0.2975 -5.3958 24 6 1.7271 2.2065 1.2974 25 6 3.0685 1.6781 1.8373 26 6 3.5263 1.5703 0.3732 27 1 -0.3633 -1.0252 -0.0717 28 1 -0.3633 0.4506 0.9236 29 1 -0.3633 0.5747 -0.8519 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.1139 3.1977 -1.2469 33 1 0.5745 2.3072 -1.3210 34 1 3.1455 1.3892 -2.4342 35 1 2.0586 3.1313 -3.7342 36 1 0.5907 2.1250 -3.7069 37 1 4.0024 2.4597 -5.0213 38 1 4.8450 1.1900 -6.9539 39 1 3.5154 -0.6590 -7.8885 40 1 1.8758 -1.4310 -8.9470 41 1 2.6806 -2.5746 -7.8457 42 1 0.6097 -3.9336 -7.7421 43 1 -0.1958 -2.7904 -8.8433 44 1 -1.0172 -6.0971 -10.2397 45 1 0.4863 0.0479 -4.9576 46 1 1.7030 3.2889 1.1718 47 1 0.8584 1.8220 1.8319 48 1 2.9860 0.7149 2.3409 49 1 3.6282 2.4122 2.4169 50 1 4.1082 0.6730 0.1625 51 1 3.9955 2.4779 -0.0069 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084056737.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:01 Heat of formation + Delta-G solvation = -34.434475 kcal Electronic energy + Delta-G solvation = -25715.363965 eV Core-core repulsion = 22192.784149 eV Total energy + Delta-G solvation = -3522.579816 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.10042 -40.68423 -38.81154 -36.34531 -35.45120 -33.21464 -32.58975 -32.15510 -30.59374 -28.42805 -27.02897 -26.63007 -25.61364 -24.29199 -23.52208 -23.25404 -22.44792 -21.53926 -19.18394 -18.76843 -18.14745 -17.16985 -16.94217 -16.88897 -16.77878 -16.47275 -16.16816 -16.02684 -15.72676 -14.88826 -14.64976 -14.50805 -14.33695 -14.29329 -14.07085 -14.01315 -13.53893 -13.27880 -13.17373 -12.98888 -12.81770 -12.76598 -12.60581 -12.55180 -12.42526 -12.19580 -12.04598 -11.93337 -11.80043 -11.59905 -11.56475 -11.38254 -11.12607 -10.85923 -10.75792 -10.62945 -9.81160 -9.28378 -9.06580 -8.27280 -6.41287 0.36190 0.54728 1.40290 1.42846 1.53948 2.27274 2.51572 2.76965 3.06863 3.35060 3.70582 3.78201 3.84898 3.92259 3.98017 4.03560 4.15411 4.21262 4.24523 4.25751 4.33790 4.43339 4.51624 4.56061 4.64078 4.67500 4.72086 4.72869 4.75325 4.85786 4.88928 4.90498 4.93994 5.06796 5.12140 5.12456 5.15801 5.28289 5.30760 5.33052 5.45450 5.45568 5.53213 5.53662 5.61134 5.62994 5.67723 5.68590 5.91078 6.06576 6.12808 6.51516 6.58493 6.73425 7.28810 8.85879 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.019038 B = 0.002076 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.378873 B =13485.808863 C =14344.854176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 C -0.074 4.074 4 C 0.078 3.922 5 N -0.687 5.687 6 C 0.108 3.892 7 C -0.043 4.043 8 C -0.152 4.152 9 C -0.078 4.078 10 C -0.224 4.224 11 C 0.105 3.895 12 O -0.343 6.343 13 C 0.086 3.914 14 C 0.028 3.972 15 C -0.546 4.546 16 H 0.071 0.929 17 C 0.000 4.000 18 N -0.931 5.931 19 Si 0.978 3.022 20 H -0.270 1.270 21 H -0.281 1.281 22 H -0.259 1.259 23 C -0.151 4.151 24 C -0.130 4.130 25 C -0.139 4.139 26 C -0.134 4.134 27 H 0.044 0.956 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.040 0.960 33 H 0.068 0.932 34 H 0.345 0.655 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.125 0.875 40 H 0.059 0.941 41 H 0.058 0.942 42 H -0.003 1.003 43 H -0.002 1.002 44 H 0.267 0.733 45 H 0.119 0.881 46 H 0.086 0.914 47 H 0.068 0.932 48 H 0.077 0.923 49 H 0.072 0.928 50 H 0.061 0.939 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.507 20.250 21.475 31.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.126 4.126 3 C -0.075 4.075 4 C -0.051 4.051 5 N -0.319 5.319 6 C -0.020 4.020 7 C -0.044 4.044 8 C -0.171 4.171 9 C -0.096 4.096 10 C -0.243 4.243 11 C 0.059 3.941 12 O -0.258 6.258 13 C 0.011 3.989 14 C -0.009 4.009 15 C -0.584 4.584 16 H 0.089 0.911 17 C -0.199 4.199 18 N -0.570 5.570 19 Si 0.801 3.199 20 H -0.195 1.195 21 H -0.206 1.206 22 H -0.183 1.183 23 C -0.171 4.171 24 C -0.167 4.167 25 C -0.176 4.176 26 C -0.172 4.172 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.086 0.914 34 H 0.163 0.837 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.168 0.832 38 H 0.168 0.832 39 H 0.143 0.857 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.076 0.924 45 H 0.137 0.863 46 H 0.104 0.896 47 H 0.087 0.913 48 H 0.095 0.905 49 H 0.090 0.910 50 H 0.080 0.920 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.645 19.610 21.531 30.379 hybrid contribution 0.416 -0.300 -1.050 1.169 sum 9.062 19.310 20.481 29.571 Atomic orbital electron populations 1.21700 0.96025 1.01054 1.01527 1.21112 0.95648 0.94633 1.01248 1.21826 0.96356 0.95576 0.93692 1.21919 1.00236 0.94184 0.88737 1.60346 1.17502 1.53358 1.00663 1.20790 1.00394 0.94627 0.86225 1.19692 0.94164 0.94454 0.96077 1.21200 0.96122 1.02101 0.97663 1.21215 0.99622 0.93235 0.95485 1.21494 0.95681 1.02968 1.04122 1.19539 0.91454 0.88769 0.94290 1.86084 1.47329 1.44784 1.47605 1.22838 0.97490 0.93379 0.85157 1.18968 0.94366 0.92047 0.95539 1.21390 1.05797 1.16658 1.14521 0.91095 1.26071 0.95108 0.97895 1.00778 1.70127 1.14703 1.29254 1.42925 0.85262 0.78036 0.78623 0.77999 1.19515 1.20615 1.18282 1.20387 1.02155 0.98039 0.96490 1.23021 0.97885 1.00075 0.95762 1.22808 0.97137 1.01436 0.96236 1.23002 0.95530 1.01923 0.96720 0.93729 0.92302 0.93129 0.92271 0.92487 0.94234 0.91353 0.83682 0.92314 0.90555 0.83192 0.83166 0.85687 0.92249 0.92333 0.98444 0.98367 0.92429 0.86337 0.89568 0.91345 0.90478 0.90971 0.92045 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.60 71.98 0.69 -1.79 16 2 C -0.09 -1.49 5.14 30.60 0.16 -1.33 16 3 C -0.07 -0.99 0.67 -51.65 -0.03 -1.02 16 4 C 0.08 1.08 4.67 86.30 0.40 1.48 16 5 N -0.69 -11.62 5.71 -517.94 -2.96 -14.58 16 6 C 0.11 1.91 5.80 85.56 0.50 2.40 16 7 C -0.04 -1.02 5.39 -19.88 -0.11 -1.13 16 8 C -0.15 -3.14 9.70 22.28 0.22 -2.92 16 9 C -0.08 -1.82 10.04 22.26 0.22 -1.60 16 10 C -0.22 -6.97 9.04 22.37 0.20 -6.77 16 11 C 0.10 3.82 6.69 22.51 0.15 3.97 16 12 O -0.34 -15.28 10.14 -92.40 -0.94 -16.22 16 13 C 0.09 3.89 4.68 71.98 0.34 4.23 16 14 C 0.03 1.57 5.34 29.85 0.16 1.73 16 15 C -0.55 -31.33 9.11 25.60 0.23 -31.10 16 16 H 0.07 3.79 7.74 -2.91 -0.02 3.77 16 17 C 0.00 0.00 5.46 84.65 0.46 0.46 16 18 N -0.93 -57.40 13.29 21.45 0.28 -57.11 16 19 Si 0.98 43.95 29.54 68.60 2.03 45.97 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 22 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 23 C -0.15 -4.75 9.64 22.37 0.22 -4.54 16 24 C -0.13 -1.44 7.08 31.18 0.22 -1.22 16 25 C -0.14 -1.51 7.74 31.18 0.24 -1.27 16 26 C -0.13 -1.61 7.04 31.12 0.22 -1.39 16 27 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.85 6.97 -2.39 -0.02 0.83 16 29 H 0.05 0.93 6.74 -2.39 -0.02 0.92 16 30 H 0.06 1.24 7.61 -2.38 -0.02 1.22 16 31 H 0.06 0.91 7.31 -2.39 -0.02 0.89 16 32 H 0.04 0.47 8.09 -2.39 -0.02 0.45 16 33 H 0.07 1.03 6.98 -2.39 -0.02 1.02 16 34 H 0.34 5.48 8.60 -89.70 -0.77 4.71 16 35 H 0.06 0.81 8.08 -2.39 -0.02 0.79 16 36 H 0.08 1.43 8.08 -2.39 -0.02 1.41 16 37 H 0.15 2.05 8.06 -2.91 -0.02 2.02 16 38 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 39 H 0.13 3.89 6.30 -2.91 -0.02 3.87 16 40 H 0.06 2.53 7.67 -2.39 -0.02 2.51 16 41 H 0.06 2.51 7.65 -2.39 -0.02 2.49 16 42 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 43 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 44 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 45 H 0.12 3.81 8.06 -2.91 -0.02 3.79 16 46 H 0.09 0.83 8.10 -2.39 -0.02 0.81 16 47 H 0.07 0.78 6.89 -2.39 -0.02 0.77 16 48 H 0.08 0.88 7.61 -2.38 -0.02 0.86 16 49 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.06 0.83 8.10 -2.38 -0.02 0.81 16 51 H 0.08 0.88 8.06 -2.38 -0.02 0.86 16 Total: -1.00 -66.62 404.46 3.02 -63.60 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.12 Total: 20.14 kcal Atomic # 6 Polarization: -46.29 SS G_CDS: 4.49 Total: -41.80 kcal Atomic # 7 Polarization: -69.02 SS G_CDS: -2.67 Total: -71.69 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.94 Total: -16.22 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -66.62 3.02 -63.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084056737.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.163 kcal (2) G-P(sol) polarization free energy of solvation -66.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds