Wall clock time and date at job start Tue Mar 31 2020 11:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47079 * 2 1 4 4 C 1.52998 * 109.47472 * 239.99697 * 2 1 3 5 5 C 1.50700 * 109.46843 * 59.99814 * 4 2 1 6 6 H 1.08004 * 120.00023 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00013 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99768 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00092 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47348 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47009 * 120.00353 * 9 7 5 12 12 H 1.48496 * 109.47615 * 240.00457 * 9 7 5 13 13 C 1.53005 * 109.46885 * 119.99668 * 2 1 3 14 14 N 1.46903 * 109.47132 * 324.01231 * 13 2 1 15 15 C 1.47015 * 110.99450 * 182.42647 * 14 13 2 16 16 C 1.53095 * 109.25199 * 182.39291 * 15 14 13 17 17 O 1.43019 * 109.26013 * 303.15036 * 16 15 14 18 18 C 1.43014 * 113.73534 * 58.67385 * 17 16 15 19 19 C 1.52999 * 109.50814 * 61.30753 * 18 17 16 20 20 C 1.50701 * 109.50579 * 181.39289 * 18 17 16 21 21 C 1.38232 * 120.00244 * 329.91534 * 20 18 17 22 22 C 1.38233 * 120.00192 * 179.97438 * 21 20 18 23 23 C 1.38241 * 119.99827 * 359.97438 * 22 21 20 24 24 C 1.38227 * 120.00157 * 0.27936 * 23 22 21 25 25 C 1.38242 * 120.00103 * 359.51196 * 24 23 22 26 26 C 1.47011 * 110.99661 * 306.10709 * 14 13 2 27 27 H 1.08994 * 109.47660 * 293.18205 * 1 2 3 28 28 H 1.09010 * 109.47244 * 53.18088 * 1 2 3 29 29 H 1.09000 * 109.47145 * 173.17774 * 1 2 3 30 30 H 1.09006 * 109.47079 * 191.78919 * 3 2 1 31 31 H 1.08997 * 109.47562 * 311.78838 * 3 2 1 32 32 H 1.09003 * 109.47584 * 71.79283 * 3 2 1 33 33 H 1.08997 * 109.47477 * 180.02562 * 4 2 1 34 34 H 1.09006 * 109.47212 * 300.00725 * 4 2 1 35 35 H 0.96999 * 119.99877 * 179.97438 * 8 7 5 36 36 H 1.08992 * 109.47050 * 204.00805 * 13 2 1 37 37 H 1.09003 * 109.46628 * 84.01364 * 13 2 1 38 38 H 1.08995 * 109.50776 * 62.46061 * 15 14 13 39 39 H 1.08996 * 109.54367 * 302.34585 * 15 14 13 40 40 H 1.09000 * 109.50825 * 183.21907 * 16 15 14 41 41 H 1.09000 * 109.51364 * 63.08744 * 16 15 14 42 42 H 1.09001 * 109.47101 * 180.08319 * 19 18 17 43 43 H 1.08994 * 109.47096 * 300.08966 * 19 18 17 44 44 H 1.09001 * 109.47231 * 60.09007 * 19 18 17 45 45 H 1.07997 * 119.99794 * 359.97296 * 21 20 18 46 46 H 1.07996 * 120.00160 * 179.97438 * 22 21 20 47 47 H 1.07997 * 119.99669 * 180.02562 * 23 22 21 48 48 H 1.08004 * 120.00124 * 179.71980 * 24 23 22 49 49 H 1.07999 * 120.00312 * 180.27604 * 25 24 23 50 50 H 1.09002 * 109.54759 * 57.69587 * 26 14 13 51 51 H 1.08998 * 109.47569 * 297.56481 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4796 6 1 0.9170 0.8674 -2.3806 7 6 1.8712 -0.4817 -3.7319 8 7 2.6274 -1.5510 -3.8525 9 14 1.2492 0.3992 -5.2572 10 1 0.4245 1.5662 -4.8531 11 1 2.4045 0.8660 -6.0650 12 1 0.4244 -0.5339 -6.0660 13 6 2.0399 -0.7212 1.2493 14 7 1.1465 -0.4339 2.3795 15 6 1.6380 -1.0649 3.6131 16 6 0.6489 -0.7909 4.7490 17 8 0.4772 0.6215 4.8946 18 6 -0.0010 1.2682 3.7120 19 6 -1.3750 0.7057 3.3422 20 6 -0.1142 2.7503 3.9597 21 6 -0.3912 3.2197 5.2301 22 6 -0.4944 4.5793 5.4574 23 6 -0.3201 5.4696 4.4144 24 6 -0.0483 5.0001 3.1430 25 6 0.0592 3.6407 2.9165 26 6 0.9807 1.0150 2.5648 27 1 -0.3634 0.4045 0.9446 28 1 -0.3634 0.6159 -0.8227 29 1 -0.3633 -1.0204 -0.1221 30 1 3.1095 1.4497 -0.2100 31 1 1.5154 2.0133 -0.7662 32 1 1.8583 1.8921 0.9762 33 1 3.1300 -0.7217 -1.2489 34 1 1.6766 -1.7490 -1.2492 35 1 2.8618 -1.8824 -4.7335 36 1 3.0460 -0.3740 1.4841 37 1 2.0599 -1.7955 1.0659 38 1 2.6124 -0.6500 3.8709 39 1 1.7290 -2.1404 3.4612 40 1 1.0371 -1.2079 5.6782 41 1 -0.3107 -1.2519 4.5154 42 1 -1.7382 1.1979 2.4400 43 1 -1.2925 -0.3663 3.1632 44 1 -2.0731 0.8849 4.1599 45 1 -0.5270 2.5241 6.0450 46 1 -0.7113 4.9459 6.4498 47 1 -0.4004 6.5318 4.5921 48 1 0.0834 5.6956 2.3272 49 1 0.2760 3.2740 1.9240 50 1 0.5911 1.4577 1.6481 51 1 1.9447 1.4633 2.8051 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093342046.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:46 Heat of formation + Delta-G solvation = -2.980770 kcal Electronic energy + Delta-G solvation = -28476.480933 eV Core-core repulsion = 24955.265051 eV Total energy + Delta-G solvation = -3521.215881 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.74416 -38.82031 -37.43921 -34.31998 -33.57842 -32.16183 -30.96982 -29.61064 -28.90125 -27.45147 -26.85521 -26.31236 -24.06456 -23.94811 -22.61155 -22.27298 -21.22296 -19.27153 -18.11279 -17.23195 -16.46122 -16.22067 -15.88422 -15.50200 -14.99071 -14.75187 -14.54557 -14.40877 -14.25984 -13.95200 -13.51533 -13.42902 -13.24283 -12.89134 -12.58512 -12.35760 -12.17499 -12.09284 -12.03463 -11.75137 -11.49410 -11.24269 -11.14864 -11.04323 -10.95595 -10.79961 -10.64911 -10.51314 -10.38012 -10.16118 -9.97818 -9.69870 -9.65527 -8.96799 -8.91842 -8.82722 -8.70684 -8.32388 -8.07905 -5.96768 -3.96817 1.26104 1.36079 3.31757 3.39782 3.42830 3.57572 3.79249 4.01271 4.48332 4.66294 4.81076 4.92802 4.95560 4.98349 5.08073 5.13991 5.23117 5.31320 5.39352 5.43831 5.52213 5.55727 5.64045 5.68119 5.72399 5.78523 5.83529 5.89782 5.93452 5.97790 6.00616 6.04720 6.24320 6.27908 6.31271 6.36631 6.42570 6.45585 6.53607 6.57861 6.73610 6.84200 6.92970 7.11214 7.15877 7.19558 7.24400 7.32255 7.38039 7.68963 7.84989 8.03185 8.47673 9.08707 9.66212 11.14945 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.015673 B = 0.003771 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.041860 B = 7422.692336 C = 8686.663547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.059 4.059 3 C -0.149 4.149 4 C 0.036 3.964 5 C -0.505 4.505 6 H 0.058 0.942 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.886 3.114 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.065 3.935 14 N -0.525 5.525 15 C 0.014 3.986 16 C 0.064 3.936 17 O -0.377 6.377 18 C 0.158 3.842 19 C -0.163 4.163 20 C -0.069 4.069 21 C -0.096 4.096 22 C -0.126 4.126 23 C -0.123 4.123 24 C -0.119 4.119 25 C -0.111 4.111 26 C 0.016 3.984 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.045 0.955 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.045 0.955 33 H 0.012 0.988 34 H 0.016 0.984 35 H 0.258 0.742 36 H 0.027 0.973 37 H 0.075 0.925 38 H 0.038 0.962 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.055 0.945 45 H 0.126 0.874 46 H 0.119 0.881 47 H 0.119 0.881 48 H 0.123 0.877 49 H 0.127 0.873 50 H 0.120 0.880 51 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.841 7.740 19.415 21.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.060 4.060 3 C -0.206 4.206 4 C -0.001 4.001 5 C -0.543 4.543 6 H 0.076 0.924 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.062 4.062 14 N -0.250 5.250 15 C -0.114 4.114 16 C -0.013 4.013 17 O -0.296 6.296 18 C 0.118 3.882 19 C -0.220 4.220 20 C -0.070 4.070 21 C -0.114 4.114 22 C -0.144 4.144 23 C -0.141 4.141 24 C -0.137 4.137 25 C -0.129 4.129 26 C -0.112 4.112 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.030 0.970 34 H 0.034 0.966 35 H 0.068 0.932 36 H 0.045 0.955 37 H 0.093 0.907 38 H 0.056 0.944 39 H 0.102 0.898 40 H 0.112 0.888 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.074 0.926 45 H 0.144 0.856 46 H 0.138 0.862 47 H 0.137 0.863 48 H 0.141 0.859 49 H 0.145 0.855 50 H 0.138 0.862 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.177 7.514 19.346 21.654 hybrid contribution 0.696 0.482 -1.079 1.371 sum -5.481 7.996 18.267 20.680 Atomic orbital electron populations 1.21885 0.94911 1.01509 1.00047 1.20642 0.95973 0.94771 0.94594 1.22312 1.01165 0.96977 1.00098 1.19147 0.95829 0.95105 0.90010 1.21260 1.30621 1.11869 0.90584 0.92361 1.25012 0.95410 0.95125 0.99046 1.69974 1.37364 1.23240 1.23168 0.86623 0.78596 0.79750 0.83554 1.19792 1.21209 1.21152 1.22351 0.92703 1.01038 0.90100 1.62364 1.49143 1.09678 1.03790 1.22773 0.96996 1.00588 0.91055 1.22656 0.98815 0.81810 0.98036 1.87967 1.86493 1.20301 1.34815 1.20277 0.94077 0.88707 0.85095 1.22279 0.95072 1.02994 1.01699 1.19541 1.00106 0.93196 0.94139 1.20972 0.98497 0.95325 0.96610 1.21138 1.00919 0.93336 0.98987 1.21154 1.00268 0.99521 0.93184 1.21126 1.00133 0.95346 0.97132 1.21131 0.99556 0.93089 0.99108 1.23476 0.98099 0.89992 0.99600 0.92776 0.93173 0.93568 0.93475 0.92205 0.93624 0.96961 0.96589 0.93232 0.95477 0.90696 0.94425 0.89760 0.88828 0.91986 0.91314 0.90285 0.92582 0.85612 0.86248 0.86300 0.85868 0.85476 0.86215 0.94286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 7.42 37.16 0.28 -2.07 16 2 C -0.06 -1.15 0.53 -154.51 -0.08 -1.24 16 3 C -0.15 -2.72 7.44 37.15 0.28 -2.45 16 4 C 0.04 0.91 3.89 -27.88 -0.11 0.80 16 5 C -0.50 -13.66 7.84 -34.44 -0.27 -13.93 16 6 H 0.06 1.54 5.77 -52.48 -0.30 1.23 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 9 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 C 0.07 1.11 4.61 -3.82 -0.02 1.10 16 14 N -0.53 -7.67 3.20 -234.31 -0.75 -8.42 16 15 C 0.01 0.18 5.67 -3.71 -0.02 0.16 16 16 C 0.06 0.71 6.61 37.21 0.25 0.95 16 17 O -0.38 -4.91 9.27 -35.23 -0.33 -5.23 16 18 C 0.16 2.03 0.94 -91.72 -0.09 1.94 16 19 C -0.16 -1.98 7.45 37.16 0.28 -1.71 16 20 C -0.07 -0.87 4.84 -104.62 -0.51 -1.38 16 21 C -0.10 -1.11 9.35 -39.59 -0.37 -1.48 16 22 C -0.13 -1.27 10.05 -39.58 -0.40 -1.67 16 23 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 24 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 25 C -0.11 -1.35 9.15 -39.58 -0.36 -1.71 16 26 C 0.02 0.22 1.21 -3.71 0.00 0.22 16 27 H 0.05 0.87 3.42 -51.93 -0.18 0.69 16 28 H 0.05 0.99 6.78 -51.92 -0.35 0.63 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.90 8.09 -51.93 -0.42 0.48 16 31 H 0.06 1.14 6.95 -51.93 -0.36 0.78 16 32 H 0.05 0.72 3.86 -51.93 -0.20 0.52 16 33 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.02 0.43 8.12 -51.93 -0.42 0.01 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.03 0.47 7.92 -51.93 -0.41 0.06 16 37 H 0.07 1.33 7.91 -51.93 -0.41 0.92 16 38 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.67 6.49 -51.93 -0.34 0.33 16 42 H 0.07 0.84 7.62 -51.93 -0.40 0.44 16 43 H 0.08 0.99 6.13 -51.93 -0.32 0.68 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.13 1.40 7.49 -52.49 -0.39 1.00 16 46 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 47 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 48 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 49 H 0.13 1.54 6.04 -52.49 -0.32 1.22 16 50 H 0.12 1.76 2.07 -51.93 -0.11 1.65 16 51 H 0.04 0.60 7.63 -51.93 -0.40 0.20 16 LS Contribution 372.77 15.07 5.62 5.62 Total: -1.00 -29.80 372.77 -10.05 -39.85 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -8.26 Total: 2.01 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: -2.04 Total: -24.32 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: -0.01 Total: -34.40 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.33 Total: -5.23 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.80 -10.05 -39.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093342046.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.870 kcal (2) G-P(sol) polarization free energy of solvation -29.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds