Wall clock time and date at job start Tue Mar 31 2020 11:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47079 * 2 1 4 4 C 1.52998 * 109.47472 * 239.99697 * 2 1 3 5 5 C 1.50700 * 109.46843 * 59.99814 * 4 2 1 6 6 H 1.08004 * 120.00023 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00013 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99768 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00092 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47348 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47009 * 120.00353 * 9 7 5 12 12 H 1.48496 * 109.47615 * 240.00457 * 9 7 5 13 13 C 1.53005 * 109.46885 * 119.99668 * 2 1 3 14 14 N 1.46903 * 109.47132 * 324.01231 * 13 2 1 15 15 C 1.47015 * 110.99450 * 182.42647 * 14 13 2 16 16 C 1.53095 * 109.25199 * 182.39291 * 15 14 13 17 17 O 1.43019 * 109.26013 * 303.15036 * 16 15 14 18 18 C 1.43014 * 113.73534 * 58.67385 * 17 16 15 19 19 C 1.52999 * 109.50814 * 61.30753 * 18 17 16 20 20 C 1.50701 * 109.50579 * 181.39289 * 18 17 16 21 21 C 1.38232 * 120.00244 * 329.91534 * 20 18 17 22 22 C 1.38233 * 120.00192 * 179.97438 * 21 20 18 23 23 C 1.38241 * 119.99827 * 359.97438 * 22 21 20 24 24 C 1.38227 * 120.00157 * 0.27936 * 23 22 21 25 25 C 1.38242 * 120.00103 * 359.51196 * 24 23 22 26 26 C 1.47011 * 110.99661 * 306.10709 * 14 13 2 27 27 H 1.08994 * 109.47660 * 293.18205 * 1 2 3 28 28 H 1.09010 * 109.47244 * 53.18088 * 1 2 3 29 29 H 1.09000 * 109.47145 * 173.17774 * 1 2 3 30 30 H 1.09006 * 109.47079 * 191.78919 * 3 2 1 31 31 H 1.08997 * 109.47562 * 311.78838 * 3 2 1 32 32 H 1.09003 * 109.47584 * 71.79283 * 3 2 1 33 33 H 1.08997 * 109.47477 * 180.02562 * 4 2 1 34 34 H 1.09006 * 109.47212 * 300.00725 * 4 2 1 35 35 H 0.96999 * 119.99877 * 179.97438 * 8 7 5 36 36 H 1.08992 * 109.47050 * 204.00805 * 13 2 1 37 37 H 1.09003 * 109.46628 * 84.01364 * 13 2 1 38 38 H 1.08995 * 109.50776 * 62.46061 * 15 14 13 39 39 H 1.08996 * 109.54367 * 302.34585 * 15 14 13 40 40 H 1.09000 * 109.50825 * 183.21907 * 16 15 14 41 41 H 1.09000 * 109.51364 * 63.08744 * 16 15 14 42 42 H 1.09001 * 109.47101 * 180.08319 * 19 18 17 43 43 H 1.08994 * 109.47096 * 300.08966 * 19 18 17 44 44 H 1.09001 * 109.47231 * 60.09007 * 19 18 17 45 45 H 1.07997 * 119.99794 * 359.97296 * 21 20 18 46 46 H 1.07996 * 120.00160 * 179.97438 * 22 21 20 47 47 H 1.07997 * 119.99669 * 180.02562 * 23 22 21 48 48 H 1.08004 * 120.00124 * 179.71980 * 24 23 22 49 49 H 1.07999 * 120.00312 * 180.27604 * 25 24 23 50 50 H 1.09002 * 109.54759 * 57.69587 * 26 14 13 51 51 H 1.08998 * 109.47569 * 297.56481 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4796 6 1 0.9170 0.8674 -2.3806 7 6 1.8712 -0.4817 -3.7319 8 7 2.6274 -1.5510 -3.8525 9 14 1.2492 0.3992 -5.2572 10 1 0.4245 1.5662 -4.8531 11 1 2.4045 0.8660 -6.0650 12 1 0.4244 -0.5339 -6.0660 13 6 2.0399 -0.7212 1.2493 14 7 1.1465 -0.4339 2.3795 15 6 1.6380 -1.0649 3.6131 16 6 0.6489 -0.7909 4.7490 17 8 0.4772 0.6215 4.8946 18 6 -0.0010 1.2682 3.7120 19 6 -1.3750 0.7057 3.3422 20 6 -0.1142 2.7503 3.9597 21 6 -0.3912 3.2197 5.2301 22 6 -0.4944 4.5793 5.4574 23 6 -0.3201 5.4696 4.4144 24 6 -0.0483 5.0001 3.1430 25 6 0.0592 3.6407 2.9165 26 6 0.9807 1.0150 2.5648 27 1 -0.3634 0.4045 0.9446 28 1 -0.3634 0.6159 -0.8227 29 1 -0.3633 -1.0204 -0.1221 30 1 3.1095 1.4497 -0.2100 31 1 1.5154 2.0133 -0.7662 32 1 1.8583 1.8921 0.9762 33 1 3.1300 -0.7217 -1.2489 34 1 1.6766 -1.7490 -1.2492 35 1 2.8618 -1.8824 -4.7335 36 1 3.0460 -0.3740 1.4841 37 1 2.0599 -1.7955 1.0659 38 1 2.6124 -0.6500 3.8709 39 1 1.7290 -2.1404 3.4612 40 1 1.0371 -1.2079 5.6782 41 1 -0.3107 -1.2519 4.5154 42 1 -1.7382 1.1979 2.4400 43 1 -1.2925 -0.3663 3.1632 44 1 -2.0731 0.8849 4.1599 45 1 -0.5270 2.5241 6.0450 46 1 -0.7113 4.9459 6.4498 47 1 -0.4004 6.5318 4.5921 48 1 0.0834 5.6956 2.3272 49 1 0.2760 3.2740 1.9240 50 1 0.5911 1.4577 1.6481 51 1 1.9447 1.4633 2.8051 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093342046.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:45 Heat of formation + Delta-G solvation = -18.217293 kcal Electronic energy + Delta-G solvation = -28477.141638 eV Core-core repulsion = 24955.265051 eV Total energy + Delta-G solvation = -3521.876587 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.80683 -39.80023 -38.73141 -35.79877 -34.59147 -34.06628 -31.78390 -30.55773 -30.05331 -28.96780 -28.48479 -27.83287 -25.53488 -24.97008 -24.17532 -23.13758 -22.25104 -20.30277 -19.64798 -18.32507 -18.23141 -17.48564 -16.84925 -16.58579 -16.49445 -16.02551 -15.81354 -15.37760 -15.32474 -15.24040 -14.88308 -14.63472 -14.24429 -14.20358 -13.99727 -13.79872 -13.47049 -13.33273 -13.11463 -12.96720 -12.89161 -12.79806 -12.55580 -12.40046 -12.29870 -12.12803 -12.10081 -11.93259 -11.87004 -11.65954 -11.45704 -11.26093 -10.87360 -10.82036 -10.51306 -10.32047 -9.78323 -9.60831 -9.29708 -8.14282 -6.21159 0.43653 0.54235 1.39500 1.40717 1.52520 2.43144 2.67038 2.81797 2.97260 3.19960 3.69781 3.83275 3.92644 4.03120 4.10266 4.11904 4.19076 4.21212 4.32006 4.33012 4.35661 4.39771 4.55808 4.62505 4.66115 4.70470 4.74060 4.78733 4.82673 4.84824 4.92277 4.93715 4.97432 5.03192 5.13315 5.15067 5.20369 5.25528 5.34085 5.48376 5.53782 5.54887 5.59492 5.64720 5.65961 5.68684 5.82774 5.90661 6.03575 6.06086 6.13820 6.27117 6.35763 6.93923 7.46338 8.98281 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.015673 B = 0.003771 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.041860 B = 7422.692336 C = 8686.663547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.055 4.055 3 C -0.142 4.142 4 C 0.044 3.956 5 C -0.512 4.512 6 H 0.065 0.935 7 C -0.004 4.004 8 N -0.938 5.938 9 Si 0.954 3.046 10 H -0.260 1.260 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.075 3.925 14 N -0.525 5.525 15 C 0.012 3.988 16 C 0.064 3.936 17 O -0.385 6.385 18 C 0.163 3.837 19 C -0.160 4.160 20 C -0.086 4.086 21 C -0.107 4.107 22 C -0.126 4.126 23 C -0.124 4.124 24 C -0.126 4.126 25 C -0.128 4.128 26 C 0.019 3.981 27 H 0.081 0.919 28 H 0.037 0.963 29 H 0.032 0.968 30 H 0.032 0.968 31 H 0.051 0.949 32 H 0.074 0.926 33 H -0.018 1.018 34 H -0.014 1.014 35 H 0.259 0.741 36 H 0.024 0.976 37 H 0.065 0.935 38 H 0.032 0.968 39 H 0.095 0.905 40 H 0.120 0.880 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.128 0.872 46 H 0.144 0.856 47 H 0.145 0.855 48 H 0.139 0.861 49 H 0.121 0.879 50 H 0.113 0.887 51 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.154 9.567 21.011 24.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.055 4.055 3 C -0.198 4.198 4 C 0.007 3.993 5 C -0.550 4.550 6 H 0.083 0.917 7 C -0.200 4.200 8 N -0.579 5.579 9 Si 0.780 3.220 10 H -0.184 1.184 11 H -0.209 1.209 12 H -0.208 1.208 13 C -0.053 4.053 14 N -0.249 5.249 15 C -0.116 4.116 16 C -0.012 4.012 17 O -0.304 6.304 18 C 0.124 3.876 19 C -0.217 4.217 20 C -0.086 4.086 21 C -0.125 4.125 22 C -0.144 4.144 23 C -0.141 4.141 24 C -0.144 4.144 25 C -0.146 4.146 26 C -0.108 4.108 27 H 0.100 0.900 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.000 1.000 34 H 0.005 0.995 35 H 0.068 0.932 36 H 0.042 0.958 37 H 0.083 0.917 38 H 0.051 0.949 39 H 0.113 0.887 40 H 0.138 0.862 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.146 0.854 46 H 0.162 0.838 47 H 0.163 0.837 48 H 0.156 0.844 49 H 0.139 0.861 50 H 0.130 0.870 51 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -7.500 9.350 20.959 24.144 hybrid contribution 1.130 -0.087 -1.504 1.883 sum -6.370 9.263 19.455 22.469 Atomic orbital electron populations 1.21797 0.93937 1.00562 1.01014 1.20487 0.96625 0.95111 0.93282 1.22248 0.99983 0.96094 1.01516 1.19013 0.93800 0.94056 0.92472 1.21627 1.30080 1.11866 0.91397 0.91693 1.25903 0.95710 0.95902 1.02527 1.70112 1.38907 1.24961 1.23946 0.85548 0.78123 0.78864 0.79452 1.18404 1.20898 1.20834 1.22088 0.92942 1.00030 0.90249 1.62324 1.48322 1.10244 1.04055 1.22891 0.97259 1.01002 0.90421 1.22810 0.98760 0.81123 0.98517 1.87967 1.86486 1.21206 1.34742 1.20196 0.93677 0.89349 0.84412 1.22241 0.94960 1.02512 1.01968 1.19594 1.01316 0.92898 0.94835 1.21098 0.98900 0.96251 0.96237 1.21460 0.99853 0.92762 1.00302 1.21502 0.99058 1.00945 0.92627 1.21393 0.99733 0.95043 0.98254 1.21198 1.00613 0.93933 0.98853 1.23397 0.98005 0.89320 1.00070 0.90027 0.94420 0.94893 0.94832 0.93025 0.90735 0.99962 0.99543 0.93191 0.95808 0.91658 0.94920 0.88691 0.86227 0.91356 0.91585 0.90738 0.91592 0.85411 0.83816 0.83703 0.84355 0.86116 0.86965 0.95472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.33 7.42 71.98 0.53 -3.79 16 2 C -0.05 -2.17 0.53 -52.18 -0.03 -2.20 16 3 C -0.14 -5.23 7.44 71.98 0.54 -4.69 16 4 C 0.04 2.29 3.89 29.85 0.12 2.40 16 5 C -0.51 -28.26 7.84 25.60 0.20 -28.06 16 6 H 0.06 3.44 5.77 -2.91 -0.02 3.42 16 7 C 0.00 -0.22 5.46 84.66 0.46 0.25 16 8 N -0.94 -57.40 13.29 21.45 0.28 -57.12 16 9 Si 0.95 44.46 29.54 68.60 2.03 46.49 16 10 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 12 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 13 C 0.07 2.59 4.61 86.30 0.40 2.99 16 14 N -0.53 -15.00 3.20 -895.23 -2.87 -17.87 16 15 C 0.01 0.29 5.67 86.31 0.49 0.78 16 16 C 0.06 1.29 6.61 72.01 0.48 1.77 16 17 O -0.38 -9.30 9.27 -148.98 -1.38 -10.69 16 18 C 0.16 3.97 0.94 -11.51 -0.01 3.96 16 19 C -0.16 -3.63 7.45 71.98 0.54 -3.10 16 20 C -0.09 -2.04 4.84 -19.86 -0.10 -2.14 16 21 C -0.11 -2.27 9.35 22.27 0.21 -2.06 16 22 C -0.13 -2.21 10.05 22.27 0.22 -1.98 16 23 C -0.12 -2.09 10.05 22.27 0.22 -1.87 16 24 C -0.13 -2.46 10.05 22.27 0.22 -2.24 16 25 C -0.13 -2.95 9.15 22.27 0.20 -2.75 16 26 C 0.02 0.53 1.21 86.31 0.10 0.64 16 27 H 0.08 2.57 3.42 -2.39 -0.01 2.56 16 28 H 0.04 1.47 6.78 -2.38 -0.02 1.46 16 29 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.03 1.30 8.09 -2.38 -0.02 1.28 16 31 H 0.05 1.97 6.95 -2.39 -0.02 1.95 16 32 H 0.07 2.32 3.86 -2.39 -0.01 2.31 16 33 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 34 H -0.01 -0.79 8.12 -2.38 -0.02 -0.81 16 35 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 36 H 0.02 0.84 7.92 -2.39 -0.02 0.82 16 37 H 0.06 2.39 7.91 -2.39 -0.02 2.37 16 38 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.09 2.05 8.14 -2.39 -0.02 2.04 16 40 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.07 1.31 6.49 -2.39 -0.02 1.30 16 42 H 0.07 1.52 7.62 -2.39 -0.02 1.51 16 43 H 0.07 1.75 6.13 -2.39 -0.01 1.74 16 44 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.13 2.59 7.49 -2.91 -0.02 2.57 16 46 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 47 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 48 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 49 H 0.12 2.83 6.04 -2.91 -0.02 2.82 16 50 H 0.11 3.22 2.07 -2.39 0.00 3.21 16 51 H 0.03 0.82 7.63 -2.39 -0.02 0.80 16 Total: -1.00 -65.12 372.77 3.77 -61.35 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.91 Total: 19.93 kcal Atomic # 6 Polarization: -46.89 SS G_CDS: 4.80 Total: -42.09 kcal Atomic # 7 Polarization: -72.40 SS G_CDS: -2.58 Total: -74.99 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: -1.38 Total: -10.69 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -65.12 3.77 -61.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093342046.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.132 kcal (2) G-P(sol) polarization free energy of solvation -65.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds