Wall clock time and date at job start Tue Mar 31 2020 11:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47299 * 2 1 4 4 C 1.53006 * 109.47248 * 239.99928 * 2 1 3 5 5 C 1.50700 * 109.46609 * 60.00070 * 4 2 1 6 6 H 1.08000 * 120.00653 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99619 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99834 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99821 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47097 * 60.00222 * 9 7 5 11 11 H 1.48498 * 109.46702 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47133 * 300.00130 * 9 7 5 13 13 C 1.53001 * 109.46987 * 120.00079 * 2 1 3 14 14 N 1.46893 * 109.47199 * 316.04451 * 13 2 1 15 15 C 1.47012 * 111.00493 * 78.16575 * 14 13 2 16 16 C 1.53091 * 109.26054 * 177.60844 * 15 14 13 17 17 O 1.43020 * 109.26207 * 56.85158 * 16 15 14 18 18 C 1.43018 * 113.73356 * 301.32780 * 17 16 15 19 19 C 1.53006 * 109.50467 * 298.73664 * 18 17 16 20 20 C 1.50697 * 109.50680 * 178.60382 * 18 17 16 21 21 C 1.38235 * 119.99988 * 209.72677 * 20 18 17 22 22 C 1.38239 * 119.99949 * 179.74353 * 21 20 18 23 23 C 1.38239 * 119.99729 * 0.55516 * 22 21 20 24 24 C 1.38238 * 119.99815 * 359.69638 * 23 22 21 25 25 C 1.38230 * 119.99705 * 30.00155 * 20 18 17 26 26 C 1.47021 * 111.00029 * 314.52871 * 14 13 2 27 27 H 1.09002 * 109.47447 * 305.83651 * 1 2 3 28 28 H 1.09001 * 109.47042 * 65.82807 * 1 2 3 29 29 H 1.08999 * 109.47586 * 185.83177 * 1 2 3 30 30 H 1.09000 * 109.46752 * 132.57394 * 3 2 1 31 31 H 1.08996 * 109.47086 * 252.57657 * 3 2 1 32 32 H 1.09000 * 109.46493 * 12.58112 * 3 2 1 33 33 H 1.08997 * 109.47134 * 179.97438 * 4 2 1 34 34 H 1.08999 * 109.46805 * 300.00431 * 4 2 1 35 35 H 0.97002 * 119.99540 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.47064 * 76.04763 * 13 2 1 37 37 H 1.09000 * 109.46807 * 196.04310 * 13 2 1 38 38 H 1.09001 * 109.50440 * 297.54520 * 15 14 13 39 39 H 1.09005 * 109.50590 * 57.62537 * 15 14 13 40 40 H 1.09003 * 109.50849 * 176.77993 * 16 15 14 41 41 H 1.08995 * 109.51010 * 296.86851 * 16 15 14 42 42 H 1.08998 * 109.47102 * 60.00152 * 19 18 17 43 43 H 1.09007 * 109.46574 * 180.02562 * 19 18 17 44 44 H 1.08998 * 109.46982 * 299.99449 * 19 18 17 45 45 H 1.08002 * 120.00194 * 359.97438 * 21 20 18 46 46 H 1.07996 * 120.00110 * 180.27348 * 22 21 20 47 47 H 1.07993 * 120.00076 * 179.72404 * 23 22 21 48 48 H 1.08007 * 119.99513 * 180.02562 * 24 23 22 49 49 H 1.08002 * 120.00624 * 0.02562 * 25 20 18 50 50 H 1.09003 * 109.50481 * 302.33100 * 26 14 13 51 51 H 1.09000 * 109.50271 * 62.45766 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8712 -0.4815 -3.7320 8 7 2.6273 -1.5508 -3.8526 9 14 1.2491 0.3995 -5.2572 10 1 1.7442 1.7995 -5.2566 11 1 1.7440 -0.3006 -6.4696 12 1 -0.2359 0.3996 -5.2577 13 6 2.0399 -0.7213 1.2492 14 7 1.2632 -0.2858 2.4175 15 6 -0.0467 -0.9521 2.4576 16 6 -0.7967 -0.5160 3.7189 17 8 -0.9139 0.9093 3.7290 18 6 0.3430 1.5906 3.6914 19 6 1.1628 1.2187 4.9286 20 6 0.1082 3.0790 3.6709 21 6 1.0150 3.9132 3.0442 22 6 0.7969 5.2781 3.0208 23 6 -0.3221 5.8098 3.6342 24 6 -1.2261 4.9760 4.2654 25 6 -1.0109 3.6106 4.2839 26 6 1.1046 1.1758 2.4297 27 1 -0.3634 0.6017 0.8331 28 1 -0.3633 0.4208 -0.9376 29 1 -0.3634 -1.0223 0.1044 30 1 2.8166 1.5532 0.7568 31 1 2.4512 1.6825 -0.9805 32 1 1.2154 2.1193 0.2239 33 1 3.1300 -0.7209 -1.2495 34 1 1.6766 -1.7489 -1.2493 35 1 2.8616 -1.8822 -4.7336 36 1 1.9274 -1.7975 1.1187 37 1 3.0922 -0.4820 1.4028 38 1 -0.6240 -0.6733 1.5761 39 1 0.0951 -2.0328 2.4729 40 1 -1.7909 -0.9629 3.7240 41 1 -0.2462 -0.8428 4.6010 42 1 1.3336 0.1422 4.9411 43 1 2.1205 1.7386 4.8995 44 1 0.6184 1.5108 5.8265 45 1 1.8919 3.4983 2.5695 46 1 1.5030 5.9294 2.5273 47 1 -0.4902 6.8765 3.6198 48 1 -2.1005 5.3915 4.7443 49 1 -1.7169 2.9594 4.7778 50 1 2.0869 1.6485 2.4256 51 1 0.5457 1.4886 1.5478 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093342047.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:48 Heat of formation + Delta-G solvation = 17.744074 kcal Electronic energy + Delta-G solvation = -28723.344549 eV Core-core repulsion = 25203.027364 eV Total energy + Delta-G solvation = -3520.317185 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.92803 -39.00954 -37.47605 -33.95803 -33.52382 -32.02196 -30.93264 -29.65025 -28.95913 -27.72025 -26.94587 -26.66747 -23.97777 -23.75326 -22.60553 -22.20030 -21.13478 -19.11474 -18.25120 -17.22271 -16.34497 -16.19617 -15.80648 -15.38551 -15.26652 -14.86280 -14.53464 -14.34279 -14.28961 -13.64994 -13.49112 -13.40002 -13.18498 -12.90533 -12.72223 -12.44638 -12.16354 -12.07179 -12.01389 -11.56029 -11.44113 -11.20484 -11.08714 -10.96493 -10.92322 -10.75012 -10.59494 -10.49008 -10.28923 -10.15195 -10.03519 -9.78008 -9.46779 -9.34828 -9.00266 -8.93116 -8.71808 -8.35540 -7.57547 -5.99872 -4.00650 1.29732 1.39304 3.31687 3.36715 3.38940 3.63677 3.85136 4.16111 4.45309 4.72358 4.86340 4.97016 5.01830 5.06609 5.12952 5.23678 5.34504 5.36181 5.40921 5.48147 5.54822 5.60047 5.61017 5.65789 5.73099 5.78422 5.83004 5.94246 6.01913 6.04515 6.10680 6.14442 6.17536 6.27908 6.30630 6.36259 6.43164 6.46090 6.48437 6.57051 6.58943 6.68970 6.96160 7.01947 7.06898 7.24783 7.26744 7.37290 7.42448 7.65454 7.79174 7.98848 8.43147 9.04462 9.62415 11.11237 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014914 B = 0.003964 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.036250 B = 7061.882767 C = 8165.391836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.090 4.090 3 C -0.140 4.140 4 C 0.038 3.962 5 C -0.510 4.510 6 H 0.057 0.943 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.062 3.938 14 N -0.529 5.529 15 C -0.028 4.028 16 C 0.064 3.936 17 O -0.375 6.375 18 C 0.157 3.843 19 C -0.161 4.161 20 C -0.068 4.068 21 C -0.110 4.110 22 C -0.120 4.120 23 C -0.124 4.124 24 C -0.126 4.126 25 C -0.096 4.096 26 C 0.010 3.990 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.039 0.961 31 H 0.070 0.930 32 H 0.042 0.958 33 H 0.016 0.984 34 H 0.013 0.987 35 H 0.260 0.740 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.055 0.945 42 H 0.076 0.924 43 H 0.063 0.937 44 H 0.053 0.947 45 H 0.126 0.874 46 H 0.122 0.878 47 H 0.119 0.881 48 H 0.119 0.881 49 H 0.126 0.874 50 H 0.084 0.916 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.101 8.425 18.385 20.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.091 4.091 3 C -0.196 4.196 4 C 0.001 3.999 5 C -0.548 4.548 6 H 0.075 0.925 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.715 3.285 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.204 1.204 13 C -0.065 4.065 14 N -0.252 5.252 15 C -0.156 4.156 16 C -0.013 4.013 17 O -0.294 6.294 18 C 0.117 3.883 19 C -0.218 4.218 20 C -0.068 4.068 21 C -0.128 4.128 22 C -0.138 4.138 23 C -0.142 4.142 24 C -0.144 4.144 25 C -0.114 4.114 26 C -0.117 4.117 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.061 0.939 33 H 0.034 0.966 34 H 0.031 0.969 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.144 0.856 46 H 0.140 0.860 47 H 0.137 0.863 48 H 0.137 0.863 49 H 0.144 0.856 50 H 0.102 0.898 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.922 8.248 18.698 21.020 hybrid contribution -0.445 0.389 -1.751 1.849 sum -5.367 8.637 16.946 19.763 Atomic orbital electron populations 1.22544 0.96268 1.00335 1.01423 1.21198 0.94833 0.95994 0.97096 1.22301 0.99270 0.95828 1.02243 1.19123 0.96049 0.94907 0.89837 1.21180 1.30968 1.12002 0.90699 0.92530 1.25002 0.95317 0.95081 0.99007 1.69953 1.37066 1.23093 1.23461 0.86745 0.79190 0.79840 0.82755 1.20320 1.21373 1.20365 1.22463 0.97073 0.99594 0.87398 1.62509 1.15924 1.05211 1.41553 1.23721 0.91997 0.99682 1.00178 1.22662 1.00397 0.80937 0.97305 1.87971 1.28254 1.18307 1.94873 1.20257 0.84386 0.88203 0.95430 1.22243 0.99801 1.03249 0.96543 1.19542 0.95607 0.93322 0.98366 1.21079 0.99513 0.93436 0.98753 1.21111 0.97897 0.95039 0.99771 1.21146 0.94954 0.99627 0.98434 1.21141 0.99404 0.93640 1.00171 1.20983 0.96915 0.94822 0.98683 1.23531 1.00975 0.89805 0.97438 0.92785 0.91657 0.93149 0.94190 0.91103 0.93909 0.96600 0.96868 0.93051 0.91230 0.91122 0.89137 0.90360 0.88967 0.92725 0.90543 0.91838 0.92753 0.85625 0.85978 0.86341 0.86266 0.85613 0.89815 0.89956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 6.06 37.15 0.23 -2.55 16 2 C -0.09 -1.72 0.53 -154.51 -0.08 -1.80 16 3 C -0.14 -2.53 7.28 37.16 0.27 -2.26 16 4 C 0.04 0.94 3.89 -27.88 -0.11 0.83 16 5 C -0.51 -13.72 7.10 -34.44 -0.24 -13.97 16 6 H 0.06 1.49 6.34 -52.49 -0.33 1.16 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 9 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.06 1.04 4.98 -3.83 -0.02 1.02 16 14 N -0.53 -7.71 4.30 -234.31 -1.01 -8.72 16 15 C -0.03 -0.39 4.85 -3.72 -0.02 -0.41 16 16 C 0.06 0.77 6.61 37.20 0.25 1.02 16 17 O -0.37 -5.14 9.27 -35.23 -0.33 -5.47 16 18 C 0.16 2.04 0.94 -91.72 -0.09 1.95 16 19 C -0.16 -1.89 8.15 37.16 0.30 -1.59 16 20 C -0.07 -0.87 4.84 -104.63 -0.51 -1.37 16 21 C -0.11 -1.33 9.14 -39.58 -0.36 -1.69 16 22 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 23 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 24 C -0.13 -1.33 10.05 -39.58 -0.40 -1.72 16 25 C -0.10 -1.16 9.35 -39.58 -0.37 -1.53 16 26 C 0.01 0.14 1.73 -3.71 -0.01 0.13 16 27 H 0.05 0.93 3.73 -51.93 -0.19 0.73 16 28 H 0.06 1.35 6.45 -51.93 -0.33 1.02 16 29 H 0.05 0.92 6.70 -51.93 -0.35 0.57 16 30 H 0.04 0.64 5.87 -51.93 -0.30 0.34 16 31 H 0.07 1.47 6.64 -51.93 -0.34 1.13 16 32 H 0.04 0.73 6.01 -51.93 -0.31 0.42 16 33 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.07 1.20 7.78 -51.93 -0.40 0.80 16 37 H 0.07 1.18 7.74 -51.93 -0.40 0.78 16 38 H 0.09 1.37 3.18 -51.93 -0.16 1.20 16 39 H 0.08 1.02 8.03 -51.93 -0.42 0.60 16 40 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.05 0.62 6.50 -51.93 -0.34 0.28 16 42 H 0.08 0.92 6.13 -51.93 -0.32 0.61 16 43 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 44 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.13 1.45 6.27 -52.49 -0.33 1.12 16 46 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 47 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 48 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 49 H 0.13 1.46 7.49 -52.49 -0.39 1.07 16 50 H 0.08 1.17 5.15 -51.93 -0.27 0.90 16 51 H 0.08 1.32 2.70 -51.93 -0.14 1.18 16 LS Contribution 364.65 15.07 5.50 5.50 Total: -1.00 -29.24 364.65 -10.03 -39.27 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -7.86 Total: 4.52 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: -2.05 Total: -25.80 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: -0.27 Total: -34.48 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -0.33 Total: -5.47 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.24 -10.03 -39.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093342047.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.018 kcal (2) G-P(sol) polarization free energy of solvation -29.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds