Wall clock time and date at job start Tue Mar 31 2020 11:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38257 * 120.00148 * 2 1 4 4 C 1.38214 * 119.99968 * 180.23024 * 3 2 1 5 5 C 1.38260 * 120.00004 * 359.81905 * 4 3 2 6 6 C 1.38207 * 119.99834 * 359.97438 * 5 4 3 7 7 C 1.38220 * 119.99728 * 179.81730 * 2 1 3 8 8 C 1.50691 * 120.00319 * 359.97438 * 7 2 1 9 9 H 1.09002 * 109.54331 * 34.62133 * 8 7 2 10 10 C 1.53094 * 109.51161 * 274.51204 * 8 7 2 11 11 N 1.47014 * 109.26187 * 183.21646 * 10 8 7 12 12 C 1.46894 * 110.99913 * 182.39243 * 11 10 8 13 13 C 1.53001 * 109.47098 * 149.95963 * 12 11 10 14 14 C 1.53007 * 109.46951 * 305.22783 * 13 12 11 15 15 C 1.52999 * 109.47362 * 65.23127 * 13 12 11 16 16 C 1.53007 * 109.47211 * 185.23302 * 13 12 11 17 17 C 1.50696 * 109.47155 * 180.02562 * 16 13 12 18 18 H 1.08003 * 119.99942 * 359.97438 * 17 16 13 19 19 C 1.37875 * 120.00136 * 179.97438 * 17 16 13 20 20 N 1.31517 * 119.99953 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 119.99790 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47355 * 90.00052 * 21 19 17 23 23 H 1.48506 * 109.47044 * 209.99809 * 21 19 17 24 24 H 1.48497 * 109.47344 * 329.99865 * 21 19 17 25 25 C 1.47014 * 110.75241 * 58.61539 * 11 10 8 26 26 C 1.53103 * 109.25757 * 301.38459 * 25 11 10 27 27 O 1.43012 * 109.50849 * 154.72622 * 8 7 2 28 28 H 1.09000 * 109.46795 * 270.18372 * 1 2 3 29 29 H 1.08995 * 109.47137 * 30.18179 * 1 2 3 30 30 H 1.08998 * 109.47228 * 150.18627 * 1 2 3 31 31 H 1.08004 * 119.99477 * 0.02918 * 3 2 1 32 32 H 1.07998 * 119.99533 * 179.78896 * 4 3 2 33 33 H 1.07993 * 119.99883 * 179.97438 * 5 4 3 34 34 H 1.08005 * 120.00160 * 179.97438 * 6 5 4 35 35 H 1.09001 * 109.50781 * 303.15312 * 10 8 7 36 36 H 1.09008 * 109.50348 * 63.27934 * 10 8 7 37 37 H 1.09003 * 109.47451 * 269.96032 * 12 11 10 38 38 H 1.09006 * 109.47717 * 29.95909 * 12 11 10 39 39 H 1.09000 * 109.46981 * 60.00104 * 14 13 12 40 40 H 1.09000 * 109.46850 * 179.97438 * 14 13 12 41 41 H 1.09000 * 109.47247 * 300.00178 * 14 13 12 42 42 H 1.08997 * 109.46930 * 48.09786 * 15 13 12 43 43 H 1.08993 * 109.47175 * 168.10335 * 15 13 12 44 44 H 1.08999 * 109.46759 * 288.10104 * 15 13 12 45 45 H 1.08998 * 109.46877 * 299.99572 * 16 13 12 46 46 H 1.09000 * 109.47293 * 59.99635 * 16 13 12 47 47 H 0.97000 * 119.99975 * 180.02562 * 20 19 17 48 48 H 1.08999 * 109.50563 * 181.45394 * 25 11 10 49 49 H 1.08993 * 109.54362 * 61.33912 * 25 11 10 50 50 H 1.09003 * 109.50120 * 296.91577 * 26 25 11 51 51 H 1.08993 * 109.54186 * 176.80846 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0048 5 6 4.2717 -0.0001 -0.0058 6 6 3.5806 -1.1970 -0.0015 7 6 2.1981 -1.1970 0.0038 8 6 1.4446 -2.5021 0.0086 9 1 0.5300 -2.3972 -0.5751 10 6 1.0912 -2.8832 1.4486 11 7 0.4248 -4.1936 1.4538 12 6 0.0174 -4.5716 2.8135 13 6 -1.2350 -5.4480 2.7456 14 6 -2.3253 -4.7191 1.9576 15 6 -0.8971 -6.7672 2.0483 16 6 -1.7349 -5.7338 4.1632 17 6 -2.9680 -6.5975 4.0963 18 1 -3.3566 -6.9108 3.1385 19 6 -3.6002 -6.9877 5.2578 20 7 -4.6767 -7.7410 5.1994 21 14 -2.9278 -6.4463 6.9143 22 1 -3.5500 -5.1552 7.3032 23 1 -3.2434 -7.4758 7.9370 24 1 -1.4555 -6.2776 6.8197 25 6 1.2916 -5.2212 0.8586 26 6 1.6429 -4.8166 -0.5755 27 8 2.2613 -3.5271 -0.5638 28 1 -0.3633 0.0033 1.0277 29 1 -0.3633 0.8883 -0.5166 30 1 -0.3633 -0.8916 -0.5109 31 1 1.6583 2.1326 0.0005 32 1 4.1204 2.1326 -0.0083 33 1 5.3517 -0.0001 -0.0100 34 1 4.1206 -2.1324 -0.0027 35 1 2.0019 -2.9357 2.0452 36 1 0.4221 -2.1329 1.8699 37 1 0.8236 -5.1265 3.2934 38 1 -0.1990 -3.6729 3.3912 39 1 -1.9692 -4.5154 0.9478 40 1 -3.2174 -5.3436 1.9089 41 1 -2.5660 -3.7792 2.4545 42 1 0.0133 -7.1834 2.4796 43 1 -1.7183 -7.4708 2.1844 44 1 -0.7456 -6.5871 0.9840 45 1 -0.9582 -6.2530 4.7245 46 1 -1.9756 -4.7940 4.6600 47 1 -5.1217 -8.0152 6.0165 48 1 0.7687 -6.1775 0.8493 49 1 2.2055 -5.3118 1.4455 50 1 0.7340 -4.7790 -1.1761 51 1 2.3310 -5.5464 -1.0020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093478632.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:27 Heat of formation + Delta-G solvation = -37.803911 kcal Electronic energy + Delta-G solvation = -27616.931100 eV Core-core repulsion = 24094.205174 eV Total energy + Delta-G solvation = -3522.725926 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.32214 -39.95580 -38.56883 -35.85673 -34.37547 -34.11166 -33.05587 -30.72477 -29.89669 -28.75633 -27.96006 -27.69623 -25.96018 -25.02819 -24.02106 -22.87095 -21.72862 -21.20811 -19.50558 -18.86367 -17.77385 -17.45449 -17.00139 -16.53726 -16.21555 -16.14292 -15.93787 -15.37369 -15.32185 -15.07195 -14.97705 -14.68699 -14.45946 -14.15980 -13.98662 -13.95683 -13.81452 -13.34481 -13.13460 -13.08687 -12.90734 -12.72940 -12.56110 -12.52355 -12.32965 -12.16269 -11.95546 -11.85397 -11.76281 -11.71073 -11.48225 -11.31156 -11.02214 -10.89618 -10.69354 -10.50595 -9.68077 -9.49233 -9.28245 -8.21153 -6.20952 0.39316 0.50106 1.35402 1.37180 1.47816 2.39518 2.65569 2.79658 2.93738 3.13924 3.78861 3.90946 3.95227 3.99790 4.03693 4.09686 4.15433 4.21486 4.25431 4.30803 4.36406 4.46375 4.48457 4.60048 4.66956 4.72189 4.78310 4.78878 4.83562 4.85782 4.87418 4.89892 4.98616 5.02260 5.03198 5.11949 5.17829 5.23169 5.32977 5.39814 5.47436 5.55793 5.56734 5.63321 5.64053 5.71595 5.76287 5.83501 6.02915 6.06272 6.12073 6.24096 6.42925 6.86258 7.41281 8.95032 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.019899 B = 0.002987 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.783545 B = 9371.970001 C = 9909.762652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.083 4.083 3 C -0.129 4.129 4 C -0.118 4.118 5 C -0.137 4.137 6 C -0.106 4.106 7 C -0.100 4.100 8 C 0.142 3.858 9 H 0.078 0.922 10 C 0.038 3.962 11 N -0.529 5.529 12 C 0.074 3.926 13 C -0.041 4.041 14 C -0.105 4.105 15 C -0.127 4.127 16 C -0.003 4.003 17 C -0.500 4.500 18 H 0.046 0.954 19 C 0.001 3.999 20 N -0.954 5.954 21 Si 0.939 3.061 22 H -0.271 1.271 23 H -0.289 1.289 24 H -0.251 1.251 25 C 0.000 4.000 26 C 0.067 3.933 27 O -0.392 6.392 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.138 0.862 34 H 0.120 0.880 35 H 0.030 0.970 36 H 0.087 0.913 37 H 0.035 0.965 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.026 0.974 41 H 0.036 0.964 42 H 0.045 0.955 43 H 0.036 0.964 44 H 0.069 0.931 45 H 0.011 0.989 46 H 0.011 0.989 47 H 0.262 0.738 48 H 0.106 0.894 49 H 0.034 0.966 50 H 0.062 0.938 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.259 17.020 -12.701 28.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.083 4.083 3 C -0.147 4.147 4 C -0.136 4.136 5 C -0.155 4.155 6 C -0.124 4.124 7 C -0.101 4.101 8 C 0.084 3.916 9 H 0.096 0.904 10 C -0.091 4.091 11 N -0.253 5.253 12 C -0.054 4.054 13 C -0.041 4.041 14 C -0.162 4.162 15 C -0.184 4.184 16 C -0.041 4.041 17 C -0.538 4.538 18 H 0.064 0.936 19 C -0.194 4.194 20 N -0.596 5.596 21 Si 0.764 3.236 22 H -0.196 1.196 23 H -0.215 1.215 24 H -0.174 1.174 25 C -0.127 4.127 26 C -0.010 4.010 27 O -0.311 6.311 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.161 0.839 32 H 0.163 0.837 33 H 0.156 0.844 34 H 0.138 0.862 35 H 0.048 0.952 36 H 0.105 0.895 37 H 0.054 0.946 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.046 0.954 41 H 0.056 0.944 42 H 0.064 0.936 43 H 0.055 0.945 44 H 0.088 0.912 45 H 0.029 0.971 46 H 0.029 0.971 47 H 0.071 0.929 48 H 0.124 0.876 49 H 0.052 0.948 50 H 0.080 0.920 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 17.905 17.007 -12.958 27.888 hybrid contribution 0.189 -0.528 1.744 1.832 sum 18.095 16.479 -11.213 26.921 Atomic orbital electron populations 1.20933 0.90182 1.03633 1.03018 1.19923 0.96914 0.92316 0.99196 1.21298 0.94709 0.97734 1.00934 1.21490 0.94464 0.98823 0.98845 1.21405 1.00914 0.92252 1.00906 1.21080 0.93694 0.98808 0.98799 1.19521 0.94256 0.93060 1.03251 1.20829 0.92668 0.85312 0.92756 0.90439 1.22697 0.97557 0.92059 0.96741 1.62125 1.40338 1.02056 1.20750 1.22136 0.96141 0.98757 0.88346 1.20277 0.94003 0.94746 0.95094 1.21472 0.96966 0.98228 0.99560 1.21918 1.00106 0.96690 0.99657 1.19597 0.94826 0.95240 0.94457 1.21408 1.09790 1.29423 0.93211 0.93589 1.25896 0.95135 0.95265 1.03124 1.70062 1.21469 1.39001 1.29117 0.85826 0.80180 0.78078 0.79532 1.19608 1.21525 1.17447 1.23287 0.95599 0.97479 0.96357 1.22786 0.98968 0.84256 0.94983 1.87924 1.43485 1.17938 1.81770 0.90646 0.89916 0.91453 0.83934 0.83723 0.84389 0.86151 0.95151 0.89492 0.94626 0.91498 0.91476 0.95437 0.94448 0.93571 0.94506 0.91217 0.97106 0.97094 0.92925 0.87620 0.94752 0.91999 0.86447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.94 9.46 71.24 0.67 -1.27 16 2 C -0.08 -1.58 5.88 -19.86 -0.12 -1.70 16 3 C -0.13 -2.08 9.70 22.27 0.22 -1.86 16 4 C -0.12 -1.80 10.05 22.27 0.22 -1.58 16 5 C -0.14 -2.35 10.05 22.27 0.22 -2.13 16 6 C -0.11 -2.23 9.35 22.27 0.21 -2.02 16 7 C -0.10 -2.18 5.07 -19.87 -0.10 -2.28 16 8 C 0.14 3.21 2.53 29.88 0.08 3.29 16 9 H 0.08 1.76 6.15 -2.39 -0.01 1.75 16 10 C 0.04 0.91 4.79 86.31 0.41 1.32 16 11 N -0.53 -13.85 3.58 -895.21 -3.20 -17.05 16 12 C 0.07 2.27 4.23 86.30 0.37 2.63 16 13 C -0.04 -1.50 0.61 -52.18 -0.03 -1.53 16 14 C -0.10 -3.88 7.97 71.98 0.57 -3.31 16 15 C -0.13 -4.52 6.87 71.98 0.49 -4.02 16 16 C 0.00 -0.15 3.11 29.85 0.09 -0.06 16 17 C -0.50 -27.92 8.04 25.60 0.21 -27.72 16 18 H 0.05 2.81 6.00 -2.91 -0.02 2.79 16 19 C 0.00 0.08 5.47 84.65 0.46 0.55 16 20 N -0.95 -59.93 13.96 21.45 0.30 -59.63 16 21 Si 0.94 44.69 27.47 68.60 1.88 46.58 16 22 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 23 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 24 H -0.25 -11.15 6.54 99.48 0.65 -10.50 16 25 C 0.00 0.01 5.13 86.32 0.44 0.45 16 26 C 0.07 1.36 7.01 72.02 0.50 1.87 16 27 O -0.39 -9.28 9.31 -148.98 -1.39 -10.67 16 28 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.08 1.04 8.09 -2.39 -0.02 1.02 16 30 H 0.07 1.14 6.02 -2.39 -0.01 1.13 16 31 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 32 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 33 H 0.14 1.76 8.06 -2.91 -0.02 1.73 16 34 H 0.12 2.61 7.35 -2.91 -0.02 2.59 16 35 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.09 2.04 7.86 -2.38 -0.02 2.02 16 37 H 0.04 1.09 7.76 -2.39 -0.02 1.08 16 38 H 0.07 2.03 7.69 -2.38 -0.02 2.01 16 39 H 0.07 2.18 7.47 -2.39 -0.02 2.16 16 40 H 0.03 1.17 6.62 -2.39 -0.02 1.15 16 41 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.05 1.52 7.83 -2.39 -0.02 1.50 16 43 H 0.04 1.56 6.32 -2.39 -0.02 1.54 16 44 H 0.07 2.12 6.09 -2.39 -0.01 2.10 16 45 H 0.01 0.49 7.20 -2.39 -0.02 0.48 16 46 H 0.01 0.49 7.57 -2.39 -0.02 0.47 16 47 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 48 H 0.11 2.52 4.20 -2.39 -0.01 2.51 16 49 H 0.03 0.84 8.11 -2.39 -0.02 0.82 16 50 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 51 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -65.77 381.91 3.36 -62.42 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 0.84 Total: 17.72 kcal Atomic # 6 Polarization: -44.30 SS G_CDS: 4.93 Total: -39.37 kcal Atomic # 7 Polarization: -73.78 SS G_CDS: -2.90 Total: -76.68 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: -1.39 Total: -10.67 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.58 kcal Total: -65.77 3.36 -62.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093478632.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.611 kcal (2) G-P(sol) polarization free energy of solvation -65.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds