Wall clock time and date at job start Tue Mar 31 2020 11:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38255 * 119.99655 * 2 1 4 4 C 1.38222 * 119.99896 * 180.02562 * 3 2 1 5 5 C 1.38256 * 119.99900 * 0.02707 * 4 3 2 6 6 C 1.38211 * 119.99702 * 359.97438 * 5 4 3 7 7 C 1.38205 * 120.00083 * 180.02562 * 2 1 3 8 8 C 1.50700 * 120.00089 * 359.97279 * 7 2 1 9 9 H 1.08993 * 109.50872 * 324.89245 * 8 7 2 10 10 C 1.53101 * 109.50391 * 84.98574 * 8 7 2 11 11 N 1.47014 * 109.25627 * 176.78390 * 10 8 7 12 12 C 1.46899 * 110.99682 * 177.60196 * 11 10 8 13 13 C 1.53004 * 109.46770 * 208.91299 * 12 11 10 14 14 C 1.52997 * 109.47202 * 294.24566 * 13 12 11 15 15 C 1.52997 * 109.47223 * 54.25355 * 13 12 11 16 16 C 1.53006 * 109.46832 * 174.25033 * 13 12 11 17 17 C 1.50700 * 109.46976 * 180.02562 * 16 13 12 18 18 H 1.08000 * 120.00195 * 359.97438 * 17 16 13 19 19 C 1.37880 * 119.99864 * 179.97438 * 17 16 13 20 20 N 1.31521 * 119.99906 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 119.99936 * 0.02562 * 19 17 16 22 22 H 1.48492 * 109.47421 * 90.00150 * 21 19 17 23 23 H 1.48504 * 109.46805 * 209.99979 * 21 19 17 24 24 H 1.48493 * 109.47068 * 329.99549 * 21 19 17 25 25 C 1.47012 * 110.75495 * 301.38104 * 11 10 8 26 26 C 1.53099 * 109.25807 * 58.61462 * 25 11 10 27 27 O 1.43017 * 109.50603 * 204.76300 * 8 7 2 28 28 H 1.09002 * 109.46891 * 269.96768 * 1 2 3 29 29 H 1.08997 * 109.47176 * 29.97127 * 1 2 3 30 30 H 1.08999 * 109.46713 * 149.97383 * 1 2 3 31 31 H 1.08004 * 120.00472 * 0.05112 * 3 2 1 32 32 H 1.07997 * 119.99771 * 180.30591 * 4 3 2 33 33 H 1.07998 * 119.99786 * 179.97438 * 5 4 3 34 34 H 1.08006 * 119.99805 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.50373 * 296.71401 * 10 8 7 36 36 H 1.08997 * 109.50899 * 56.84731 * 10 8 7 37 37 H 1.08994 * 109.47495 * 328.91247 * 12 11 10 38 38 H 1.08996 * 109.46819 * 88.91720 * 12 11 10 39 39 H 1.09006 * 109.47228 * 75.94132 * 14 13 12 40 40 H 1.08998 * 109.47387 * 195.93521 * 14 13 12 41 41 H 1.08996 * 109.47620 * 315.94177 * 14 13 12 42 42 H 1.08993 * 109.47648 * 59.99490 * 15 13 12 43 43 H 1.09000 * 109.47063 * 179.97438 * 15 13 12 44 44 H 1.08999 * 109.46777 * 299.99254 * 15 13 12 45 45 H 1.08998 * 109.47239 * 300.00056 * 16 13 12 46 46 H 1.09000 * 109.47134 * 59.99934 * 16 13 12 47 47 H 0.96996 * 119.99425 * 179.97438 * 20 19 17 48 48 H 1.08992 * 109.50743 * 178.55563 * 25 11 10 49 49 H 1.09009 * 109.50394 * 298.64104 * 25 11 10 50 50 H 1.09000 * 109.50498 * 63.08810 * 26 25 11 51 51 H 1.09004 * 109.50544 * 183.21907 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1974 -0.0005 5 6 4.2718 0.0001 -0.0016 6 6 3.5807 -1.1968 -0.0017 7 6 2.1981 -1.1969 -0.0005 8 6 1.4446 -2.5020 -0.0005 9 1 0.5350 -2.3972 0.5907 10 6 1.0792 -2.8813 -1.4381 11 7 0.4128 -4.1918 -1.4393 12 6 -0.0060 -4.5680 -2.7961 13 6 -1.2412 -5.4675 -2.7174 14 6 -0.8670 -6.7902 -2.0455 15 6 -2.3292 -4.7695 -1.8989 16 6 -1.7627 -5.7424 -4.1293 17 6 -2.9796 -6.6279 -4.0518 18 1 -3.3444 -6.9616 -3.0916 19 6 -3.6274 -7.0120 -5.2068 20 7 -4.6892 -7.7852 -5.1392 21 14 -2.9960 -6.4354 -6.8676 22 1 -2.0104 -7.4156 -7.3899 23 1 -4.1323 -6.3223 -7.8170 24 1 -2.3437 -5.1101 -6.7162 25 6 1.2845 -5.2201 -0.8528 26 6 1.6480 -4.8173 0.5789 27 8 2.2663 -3.5277 0.5636 28 1 -0.3633 -0.0006 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6583 2.1327 0.0008 32 1 4.1204 2.1327 0.0045 33 1 5.3518 0.0002 -0.0025 34 1 4.1207 -2.1322 -0.0021 35 1 0.4066 -2.1306 -1.8528 36 1 1.9849 -2.9330 -2.0423 37 1 -0.2465 -3.6696 -3.3644 38 1 0.8035 -5.1049 -3.2904 39 1 -0.7687 -6.6367 -0.9708 40 1 -1.6457 -7.5283 -2.2373 41 1 0.0801 -7.1478 -2.4495 42 1 -2.5958 -3.8273 -2.3775 43 1 -3.2093 -5.4101 -1.8432 44 1 -1.9577 -4.5737 -0.8930 45 1 -2.0293 -4.8002 -4.6081 46 1 -0.9876 -6.2397 -4.7125 47 1 -5.1450 -8.0550 -5.9517 48 1 0.7619 -6.1764 -0.8403 49 1 2.1933 -5.3096 -1.4482 50 1 0.7442 -4.7805 1.1871 51 1 2.3401 -5.5478 0.9979 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093478633.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:30 Heat of formation + Delta-G solvation = -38.574160 kcal Electronic energy + Delta-G solvation = -27620.435163 eV Core-core repulsion = 24097.675837 eV Total energy + Delta-G solvation = -3522.759327 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.33242 -39.95753 -38.57386 -35.86025 -34.39527 -34.10590 -33.04632 -30.72320 -29.89833 -28.75707 -27.97089 -27.71335 -25.96486 -24.99676 -24.02248 -22.87211 -21.72259 -21.21583 -19.51174 -18.86403 -17.77341 -17.44752 -17.02013 -16.51502 -16.20357 -16.13987 -15.94101 -15.37592 -15.32553 -15.08036 -14.96512 -14.69710 -14.44818 -14.17809 -14.00483 -13.96408 -13.79878 -13.40128 -13.15070 -13.03387 -12.89966 -12.77829 -12.55106 -12.43995 -12.26980 -12.18981 -11.95693 -11.93440 -11.71137 -11.70245 -11.51915 -11.32371 -11.04049 -10.90176 -10.69142 -10.51155 -9.68918 -9.47835 -9.28630 -8.21166 -6.20894 0.38746 0.50145 1.35277 1.37339 1.48010 2.39571 2.64622 2.79548 2.93673 3.13939 3.78538 3.90928 3.96127 3.99174 4.03908 4.11585 4.13824 4.22516 4.24988 4.31923 4.36644 4.44103 4.49109 4.59139 4.66220 4.72247 4.78790 4.79455 4.82057 4.85207 4.86404 4.89956 4.98355 5.01923 5.03267 5.12272 5.17649 5.21990 5.32844 5.40509 5.46929 5.55865 5.56756 5.63230 5.64010 5.71082 5.76441 5.83379 6.02684 6.05963 6.11701 6.23979 6.42779 6.86246 7.41279 8.95012 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.019934 B = 0.002987 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.299946 B = 9371.817470 C = 9920.221292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.083 4.083 3 C -0.129 4.129 4 C -0.118 4.118 5 C -0.137 4.137 6 C -0.106 4.106 7 C -0.100 4.100 8 C 0.144 3.856 9 H 0.075 0.925 10 C 0.036 3.964 11 N -0.529 5.529 12 C 0.074 3.926 13 C -0.041 4.041 14 C -0.128 4.128 15 C -0.105 4.105 16 C -0.003 4.003 17 C -0.500 4.500 18 H 0.046 0.954 19 C 0.001 3.999 20 N -0.954 5.954 21 Si 0.939 3.061 22 H -0.272 1.272 23 H -0.289 1.289 24 H -0.250 1.250 25 C 0.000 4.000 26 C 0.066 3.934 27 O -0.391 6.391 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.138 0.862 34 H 0.121 0.879 35 H 0.087 0.913 36 H 0.031 0.969 37 H 0.066 0.934 38 H 0.036 0.964 39 H 0.067 0.933 40 H 0.037 0.963 41 H 0.047 0.953 42 H 0.036 0.964 43 H 0.027 0.973 44 H 0.066 0.934 45 H 0.012 0.988 46 H 0.009 0.991 47 H 0.262 0.738 48 H 0.106 0.894 49 H 0.034 0.966 50 H 0.062 0.938 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.258 17.155 12.544 28.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.083 4.083 3 C -0.147 4.147 4 C -0.136 4.136 5 C -0.155 4.155 6 C -0.124 4.124 7 C -0.101 4.101 8 C 0.086 3.914 9 H 0.093 0.907 10 C -0.092 4.092 11 N -0.253 5.253 12 C -0.054 4.054 13 C -0.041 4.041 14 C -0.184 4.184 15 C -0.162 4.162 16 C -0.041 4.041 17 C -0.538 4.538 18 H 0.064 0.936 19 C -0.194 4.194 20 N -0.596 5.596 21 Si 0.764 3.236 22 H -0.197 1.197 23 H -0.215 1.215 24 H -0.174 1.174 25 C -0.127 4.127 26 C -0.010 4.010 27 O -0.311 6.311 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.161 0.839 32 H 0.163 0.837 33 H 0.156 0.844 34 H 0.139 0.861 35 H 0.106 0.894 36 H 0.049 0.951 37 H 0.085 0.915 38 H 0.054 0.946 39 H 0.086 0.914 40 H 0.056 0.944 41 H 0.066 0.934 42 H 0.055 0.945 43 H 0.046 0.954 44 H 0.085 0.915 45 H 0.031 0.969 46 H 0.028 0.972 47 H 0.071 0.929 48 H 0.124 0.876 49 H 0.053 0.947 50 H 0.080 0.920 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 17.903 17.145 12.803 27.899 hybrid contribution 0.188 -0.542 -1.727 1.819 sum 18.091 16.602 11.076 26.937 Atomic orbital electron populations 1.20950 0.90203 1.03629 1.03164 1.19924 0.96902 0.92321 0.99188 1.21301 0.94713 0.97726 1.00937 1.21493 0.94457 0.98831 0.98836 1.21407 1.00921 0.92246 1.00893 1.21085 0.93690 0.98821 0.98794 1.19537 0.94272 0.93033 1.03256 1.20769 0.92522 0.85320 0.92779 0.90677 1.22734 0.97605 0.92094 0.96785 1.62131 1.39898 1.02045 1.21218 1.22144 0.96165 0.98721 0.88360 1.20276 0.94028 0.94681 0.95155 1.21936 1.00035 0.96789 0.99688 1.21472 0.96989 0.98319 0.99417 1.19598 0.94686 0.95385 0.94440 1.21406 1.10639 1.28422 0.93356 0.93575 1.25898 0.95125 0.95264 1.03134 1.70063 1.21806 1.38369 1.29397 0.85826 0.78015 0.80130 0.79654 1.19703 1.21490 1.17385 1.23294 0.95553 0.97509 0.96392 1.22791 0.98945 0.84246 0.95020 1.87926 1.43048 1.17892 1.82196 0.90283 0.90018 0.91631 0.83930 0.83711 0.84373 0.86131 0.89430 0.95090 0.91539 0.94589 0.91405 0.94406 0.93369 0.94501 0.95411 0.91464 0.96947 0.97239 0.92925 0.87575 0.94737 0.92006 0.86431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.98 9.22 71.24 0.66 -1.33 16 2 C -0.08 -1.58 5.88 -19.87 -0.12 -1.70 16 3 C -0.13 -2.08 9.70 22.27 0.22 -1.87 16 4 C -0.12 -1.80 10.05 22.27 0.22 -1.58 16 5 C -0.14 -2.35 10.05 22.27 0.22 -2.13 16 6 C -0.11 -2.23 9.35 22.27 0.21 -2.03 16 7 C -0.10 -2.19 5.07 -19.87 -0.10 -2.29 16 8 C 0.14 3.27 2.32 29.88 0.07 3.34 16 9 H 0.08 1.72 7.00 -2.39 -0.02 1.71 16 10 C 0.04 0.87 4.63 86.32 0.40 1.27 16 11 N -0.53 -13.88 3.57 -895.22 -3.20 -17.08 16 12 C 0.07 2.27 4.22 86.30 0.36 2.63 16 13 C -0.04 -1.51 0.61 -52.18 -0.03 -1.54 16 14 C -0.13 -4.53 6.91 71.98 0.50 -4.03 16 15 C -0.10 -3.88 7.94 71.98 0.57 -3.31 16 16 C 0.00 -0.15 3.11 29.85 0.09 -0.05 16 17 C -0.50 -27.89 7.98 25.60 0.20 -27.69 16 18 H 0.05 2.82 6.05 -2.91 -0.02 2.80 16 19 C 0.00 0.08 5.47 84.65 0.46 0.55 16 20 N -0.95 -59.89 13.96 21.45 0.30 -59.59 16 21 Si 0.94 44.68 27.47 68.60 1.88 46.56 16 22 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 23 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 24 H -0.25 -11.11 6.54 99.48 0.65 -10.46 16 25 C 0.00 0.00 5.16 86.31 0.44 0.45 16 26 C 0.07 1.37 7.01 72.02 0.50 1.87 16 27 O -0.39 -9.29 9.30 -148.98 -1.39 -10.68 16 28 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.08 1.08 8.09 -2.39 -0.02 1.06 16 30 H 0.06 1.18 5.40 -2.39 -0.01 1.17 16 31 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 32 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 33 H 0.14 1.76 8.06 -2.91 -0.02 1.73 16 34 H 0.12 2.61 7.35 -2.91 -0.02 2.59 16 35 H 0.09 2.06 6.71 -2.39 -0.02 2.05 16 36 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.07 2.03 7.71 -2.39 -0.02 2.01 16 38 H 0.04 1.10 7.73 -2.39 -0.02 1.08 16 39 H 0.07 2.07 6.26 -2.38 -0.01 2.05 16 40 H 0.04 1.60 6.27 -2.39 -0.01 1.59 16 41 H 0.05 1.56 7.61 -2.39 -0.02 1.54 16 42 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.03 1.18 6.62 -2.39 -0.02 1.16 16 44 H 0.07 2.19 7.45 -2.39 -0.02 2.17 16 45 H 0.01 0.57 7.20 -2.39 -0.02 0.55 16 46 H 0.01 0.42 7.57 -2.39 -0.02 0.41 16 47 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 48 H 0.11 2.54 4.10 -2.39 -0.01 2.53 16 49 H 0.03 0.84 8.11 -2.38 -0.02 0.82 16 50 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 51 H 0.12 1.89 8.14 -2.38 -0.02 1.87 16 Total: -1.00 -65.68 380.11 3.33 -62.35 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.84 Total: 17.88 kcal Atomic # 6 Polarization: -44.32 SS G_CDS: 4.89 Total: -39.43 kcal Atomic # 7 Polarization: -73.77 SS G_CDS: -2.90 Total: -76.67 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -1.39 Total: -10.68 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.88 Total: 46.56 kcal Total: -65.68 3.33 -62.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093478633.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.773 kcal (2) G-P(sol) polarization free energy of solvation -65.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds