Wall clock time and date at job start Tue Mar 31 2020 11:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 113.01153 * 2 1 4 4 C 1.53932 * 113.73192 * 228.36259 * 2 1 3 5 5 N 1.47959 * 86.18045 * 221.92193 * 4 2 1 6 6 C 1.46902 * 110.99905 * 137.58303 * 5 4 2 7 7 C 1.50698 * 109.47061 * 90.64394 * 6 5 4 8 8 C 1.38296 * 119.96900 * 269.72110 * 7 6 5 9 9 C 1.38247 * 120.10994 * 179.72463 * 8 7 6 10 10 C 1.38171 * 120.05466 * 0.55392 * 9 8 7 11 11 C 1.38706 * 119.94163 * 359.72297 * 10 9 8 12 12 O 1.35903 * 120.05197 * 179.97438 * 11 10 9 13 13 C 1.42898 * 117.00137 * 0.02562 * 12 11 10 14 14 C 1.52998 * 109.47153 * 180.02562 * 13 12 11 15 15 C 1.50705 * 109.47067 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99985 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99820 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00237 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99931 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46742 * 90.00399 * 19 17 15 21 21 H 1.48498 * 109.47473 * 210.00607 * 19 17 15 22 22 H 1.48504 * 109.46989 * 330.00876 * 19 17 15 23 23 C 1.38119 * 119.97624 * 89.99813 * 7 6 5 24 24 C 1.47957 * 90.76368 * 24.69138 * 5 4 2 25 25 C 1.52994 * 113.75920 * 220.99589 * 24 5 4 26 26 C 1.52997 * 113.76101 * 89.62679 * 24 5 4 27 27 H 1.09001 * 109.47019 * 288.36632 * 1 2 3 28 28 H 1.09007 * 109.47031 * 48.36017 * 1 2 3 29 29 H 1.09000 * 109.47575 * 168.36134 * 1 2 3 30 30 H 1.08996 * 109.46833 * 191.63740 * 3 2 1 31 31 H 1.09008 * 109.47163 * 311.63272 * 3 2 1 32 32 H 1.08997 * 109.47265 * 71.63376 * 3 2 1 33 33 H 1.09004 * 113.75969 * 336.23988 * 4 2 1 34 34 H 1.08999 * 113.76302 * 107.60444 * 4 2 1 35 35 H 1.08999 * 109.46778 * 210.63750 * 6 5 4 36 36 H 1.09001 * 109.47277 * 330.64007 * 6 5 4 37 37 H 1.07992 * 119.94354 * 359.97438 * 8 7 6 38 38 H 1.07997 * 119.97341 * 180.25375 * 9 8 7 39 39 H 1.07997 * 120.02449 * 179.74854 * 10 9 8 40 40 H 1.09006 * 109.46840 * 299.99978 * 13 12 11 41 41 H 1.08993 * 109.47082 * 59.99713 * 13 12 11 42 42 H 1.09006 * 109.47002 * 299.99600 * 14 13 12 43 43 H 1.08993 * 109.47587 * 59.99745 * 14 13 12 44 44 H 0.97006 * 119.99977 * 179.97438 * 18 17 15 45 45 H 1.08006 * 120.02685 * 359.97438 * 23 7 6 46 46 H 1.09005 * 109.47724 * 156.55698 * 25 24 5 47 47 H 1.08998 * 109.47156 * 276.55920 * 25 24 5 48 48 H 1.09006 * 109.47366 * 36.55676 * 25 24 5 49 49 H 1.08996 * 109.47536 * 323.44107 * 26 24 5 50 50 H 1.09004 * 109.47054 * 83.44467 * 26 24 5 51 51 H 1.09003 * 109.47388 * 203.44017 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1281 1.4083 0.0000 4 6 2.1495 -0.9363 -1.0531 5 7 3.1154 -1.3197 0.0000 6 6 3.3458 -2.7706 0.0000 7 6 4.5046 -3.0952 -0.9071 8 6 4.2797 -3.3696 -2.2438 9 6 5.3412 -3.6622 -3.0798 10 6 6.6286 -3.6923 -2.5790 11 6 6.8561 -3.4230 -1.2375 12 8 8.1214 -3.4525 -0.7424 13 6 9.1701 -3.7676 -1.6605 14 6 10.5122 -3.7538 -0.9261 15 6 11.6181 -4.0867 -1.8942 16 1 11.3867 -4.2884 -2.9297 17 6 12.9252 -4.1337 -1.4580 18 7 13.2068 -3.8886 -0.1970 19 14 14.2959 -4.5471 -2.6579 20 1 14.8078 -3.2968 -3.2744 21 1 15.3984 -5.2295 -1.9341 22 1 13.7711 -5.4435 -3.7193 23 6 5.7896 -3.1240 -0.4017 24 6 2.1495 -0.9363 1.0532 25 6 2.7853 -0.2004 2.2343 26 6 1.2244 -2.0755 1.4856 27 1 -0.3633 0.3238 0.9753 28 1 -0.3633 0.6829 -0.7681 29 1 -0.3634 -1.0065 -0.2073 30 1 3.1965 1.3491 -0.2073 31 1 1.6417 2.0096 -0.7681 32 1 1.9721 1.8693 0.9753 33 1 1.4904 -1.7480 -1.3612 34 1 2.6025 -0.4121 -1.8947 35 1 3.5735 -3.1023 1.0130 36 1 2.4510 -3.2806 -0.3568 37 1 3.2737 -3.3514 -2.6360 38 1 5.1635 -3.8721 -4.1242 39 1 7.4570 -3.9249 -3.2317 40 1 8.9977 -4.7575 -2.0831 41 1 9.1861 -3.0285 -2.4614 42 1 10.6847 -2.7640 -0.5032 43 1 10.4959 -4.4932 -0.1255 44 1 14.1264 -3.9221 0.1099 45 1 5.9643 -2.9136 0.6432 46 1 2.0278 0.3991 2.7393 47 1 3.2002 -0.9261 2.9337 48 1 3.5809 0.4503 1.8713 49 1 0.9702 -2.6860 0.6191 50 1 1.7301 -2.6921 2.2287 51 1 0.3137 -1.6602 1.9171 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093507871.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:29 Heat of formation + Delta-G solvation = 0.268186 kcal Electronic energy + Delta-G solvation = -26426.500342 eV Core-core repulsion = 22905.425346 eV Total energy + Delta-G solvation = -3521.074996 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.44347 -39.62417 -37.23434 -33.86845 -33.32566 -31.74775 -31.01467 -30.56556 -29.14578 -28.98994 -26.90025 -26.33997 -24.97562 -23.74960 -22.31555 -22.07425 -21.19151 -19.98699 -17.58445 -17.34212 -16.33763 -16.20076 -15.96327 -15.62866 -15.47536 -15.27316 -15.23152 -14.50414 -14.15633 -13.98590 -13.76347 -13.07575 -12.96887 -12.86289 -12.74131 -12.68817 -12.52445 -12.44989 -12.30097 -12.21467 -11.99641 -11.88115 -11.45375 -11.37658 -11.34711 -11.16071 -11.04057 -10.87787 -10.70639 -10.52698 -10.36292 -10.23292 -9.82096 -9.63603 -9.28121 -8.91289 -8.59686 -8.43270 -7.78056 -6.08784 -4.13326 1.52581 1.74537 3.28402 3.34186 3.37122 3.58473 3.86671 3.97139 4.09095 4.36546 4.42204 4.68330 4.72910 4.82263 4.89284 4.95057 5.01870 5.12287 5.23330 5.26489 5.27527 5.30757 5.35275 5.37856 5.44628 5.50316 5.51176 5.55840 5.56818 5.65833 5.67612 5.75575 5.80172 5.81513 5.89333 5.91587 6.03471 6.06903 6.10483 6.17770 6.23758 6.33840 6.60356 6.62108 6.77585 6.78242 6.90374 7.06585 7.53458 7.66560 7.83994 8.10903 8.25987 8.92240 9.50803 11.02796 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.024190 B = 0.002195 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.202913 B =12752.830350 C =13191.991100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.085 4.085 3 C -0.124 4.124 4 C 0.010 3.990 5 N -0.458 5.458 6 C 0.063 3.937 7 C -0.039 4.039 8 C -0.165 4.165 9 C -0.080 4.080 10 C -0.213 4.213 11 C 0.145 3.855 12 O -0.316 6.316 13 C 0.066 3.934 14 C 0.025 3.975 15 C -0.526 4.526 16 H 0.058 0.942 17 C 0.060 3.940 18 N -0.889 5.889 19 Si 0.899 3.101 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 C -0.143 4.143 24 C 0.059 3.941 25 C -0.126 4.126 26 C -0.156 4.156 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.053 0.947 37 H 0.111 0.889 38 H 0.118 0.882 39 H 0.128 0.872 40 H 0.050 0.950 41 H 0.050 0.950 42 H 0.028 0.972 43 H 0.027 0.973 44 H 0.263 0.737 45 H 0.125 0.875 46 H 0.059 0.941 47 H 0.054 0.946 48 H 0.069 0.931 49 H 0.059 0.941 50 H 0.063 0.937 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.694 6.311 0.693 29.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.085 4.085 3 C -0.181 4.181 4 C -0.118 4.118 5 N -0.180 5.180 6 C -0.064 4.064 7 C -0.040 4.040 8 C -0.184 4.184 9 C -0.099 4.099 10 C -0.232 4.232 11 C 0.098 3.902 12 O -0.229 6.229 13 C -0.008 4.008 14 C -0.012 4.012 15 C -0.564 4.564 16 H 0.076 0.924 17 C -0.142 4.142 18 N -0.528 5.528 19 Si 0.726 3.274 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.162 4.162 24 C -0.031 4.031 25 C -0.184 4.184 26 C -0.214 4.214 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.129 0.871 38 H 0.136 0.864 39 H 0.146 0.854 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.073 0.927 45 H 0.143 0.857 46 H 0.078 0.922 47 H 0.073 0.927 48 H 0.088 0.912 49 H 0.078 0.922 50 H 0.082 0.918 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -27.777 6.607 1.032 28.570 hybrid contribution 0.182 -0.857 -0.952 1.293 sum -27.594 5.750 0.080 28.187 Atomic orbital electron populations 1.21782 0.94170 1.01722 1.01847 1.22345 0.94886 0.95731 0.95578 1.21552 1.01550 0.93462 1.01540 1.24108 0.93756 0.97950 0.96022 1.68689 1.32271 1.14073 1.02966 1.21548 0.95441 0.90180 0.99275 1.19309 0.93330 0.97518 0.93818 1.20713 0.98435 1.05895 0.93318 1.20826 0.92055 0.97842 0.99137 1.21357 0.98367 1.08316 0.95186 1.19180 0.85679 0.93427 0.91871 1.86171 1.12683 1.83983 1.40091 1.23310 0.86743 0.98431 0.92345 1.19124 0.86928 0.98811 0.96338 1.20974 0.91242 1.48741 0.95448 0.92385 1.24994 0.98840 0.95085 0.95313 1.69979 1.19535 1.48646 1.14597 0.86487 0.81453 0.78576 0.80862 1.20490 1.21052 1.19777 1.20223 0.90102 1.05867 1.00002 1.22871 0.91678 0.95025 0.93512 1.21597 1.00680 1.00072 0.96051 1.22071 0.99766 0.97861 1.01717 0.92354 0.92440 0.92549 0.91299 0.92752 0.92294 0.91484 0.89431 0.90066 0.92865 0.87063 0.86372 0.85373 0.93213 0.93188 0.95394 0.95414 0.92717 0.85653 0.92249 0.92712 0.91150 0.92180 0.91798 0.91439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 8.02 37.16 0.30 -0.53 16 2 C -0.08 -0.64 1.31 -153.58 -0.20 -0.84 16 3 C -0.12 -0.95 7.94 37.16 0.29 -0.66 16 4 C 0.01 0.09 6.71 -2.77 -0.02 0.07 16 5 N -0.46 -4.75 5.81 -223.86 -1.30 -6.05 16 6 C 0.06 0.68 3.99 -4.98 -0.02 0.66 16 7 C -0.04 -0.53 5.44 -104.65 -0.57 -1.10 16 8 C -0.16 -2.11 9.70 -39.56 -0.38 -2.49 16 9 C -0.08 -1.11 10.04 -39.60 -0.40 -1.50 16 10 C -0.21 -3.50 9.04 -39.43 -0.36 -3.86 16 11 C 0.15 2.66 6.69 -39.22 -0.26 2.40 16 12 O -0.32 -6.79 10.14 -19.44 -0.20 -6.99 16 13 C 0.07 1.46 4.68 37.16 0.17 1.63 16 14 C 0.03 0.67 5.34 -27.88 -0.15 0.52 16 15 C -0.53 -14.87 9.11 -34.44 -0.31 -15.18 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 19 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 C -0.14 -2.31 9.64 -39.43 -0.38 -2.69 16 24 C 0.06 0.49 1.28 -130.55 -0.17 0.32 16 25 C -0.13 -1.05 8.24 37.15 0.31 -0.75 16 26 C -0.16 -1.08 6.69 37.16 0.25 -0.83 16 27 H 0.06 0.33 8.02 -51.93 -0.42 -0.09 16 28 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 29 H 0.06 0.32 7.16 -51.93 -0.37 -0.05 16 30 H 0.07 0.64 7.86 -51.93 -0.41 0.24 16 31 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 32 H 0.06 0.41 7.36 -51.93 -0.38 0.03 16 33 H 0.07 0.53 6.91 -51.93 -0.36 0.17 16 34 H 0.09 0.84 8.10 -51.93 -0.42 0.41 16 35 H 0.08 0.86 7.53 -51.93 -0.39 0.47 16 36 H 0.05 0.49 5.92 -51.93 -0.31 0.19 16 37 H 0.11 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 39 H 0.13 2.07 6.30 -52.49 -0.33 1.74 16 40 H 0.05 1.05 7.66 -51.93 -0.40 0.65 16 41 H 0.05 1.06 7.66 -51.93 -0.40 0.66 16 42 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.13 1.98 8.06 -52.48 -0.42 1.56 16 46 H 0.06 0.41 8.02 -51.93 -0.42 0.00 16 47 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.07 0.67 7.36 -51.93 -0.38 0.28 16 49 H 0.06 0.41 5.85 -51.93 -0.30 0.11 16 50 H 0.06 0.45 7.84 -51.93 -0.41 0.04 16 51 H 0.07 0.40 7.36 -51.93 -0.38 0.02 16 LS Contribution 397.25 15.07 5.99 5.99 Total: -1.00 -30.53 397.25 -10.79 -41.32 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -9.00 Total: -1.52 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: -1.99 Total: -23.21 kcal Atomic # 7 Polarization: -31.49 SS G_CDS: -0.56 Total: -32.06 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -0.20 Total: -6.99 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.53 -10.79 -41.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093507871.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.591 kcal (2) G-P(sol) polarization free energy of solvation -30.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds