Wall clock time and date at job start Tue Mar 31 2020 11:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38171 * 119.97113 * 2 1 4 4 C 1.38711 * 119.94162 * 180.02562 * 3 2 1 5 5 O 1.35902 * 120.05456 * 179.97438 * 4 3 2 6 6 C 1.38759 * 119.88837 * 0.02562 * 4 3 2 7 7 C 1.50698 * 120.02646 * 180.02562 * 6 4 3 8 8 N 1.46903 * 109.46821 * 284.99511 * 7 6 4 9 9 C 1.46904 * 110.99964 * 169.99963 * 8 7 6 10 10 C 1.50700 * 109.47139 * 284.45007 * 9 8 7 11 11 H 1.08001 * 120.00144 * 3.78106 * 10 9 8 12 12 C 1.37877 * 119.99632 * 183.77202 * 10 9 8 13 13 N 1.31510 * 120.00473 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99638 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47253 * 0.02562 * 14 12 10 16 16 H 1.48509 * 109.46553 * 120.00220 * 14 12 10 17 17 H 1.48494 * 109.47288 * 239.99982 * 14 12 10 18 18 C 1.46903 * 111.00220 * 293.95630 * 8 7 6 19 19 C 1.52999 * 109.47298 * 164.21156 * 18 8 7 20 20 C 1.52993 * 117.50200 * 243.18814 * 19 18 8 21 21 C 1.52996 * 117.49785 * 174.52484 * 19 18 8 22 22 C 1.38125 * 119.94419 * 359.72476 * 6 4 3 23 23 C 1.38246 * 119.97092 * 180.02562 * 2 1 3 24 24 C 1.50693 * 119.94316 * 359.97438 * 23 2 1 25 25 C 1.53002 * 109.47045 * 115.16915 * 24 23 2 26 26 C 1.52999 * 109.46998 * 235.16980 * 24 23 2 27 27 H 1.08991 * 109.47074 * 264.56440 * 1 2 3 28 28 H 1.08999 * 109.46977 * 24.56511 * 1 2 3 29 29 H 1.08999 * 109.47172 * 144.55930 * 1 2 3 30 30 H 1.07999 * 120.03023 * 0.04716 * 3 2 1 31 31 H 0.96696 * 114.00241 * 89.99760 * 5 4 3 32 32 H 1.08996 * 109.47258 * 44.99404 * 7 6 4 33 33 H 1.08997 * 109.47141 * 165.00005 * 7 6 4 34 34 H 1.08997 * 109.46563 * 44.45234 * 9 8 7 35 35 H 1.09001 * 109.46760 * 164.45298 * 9 8 7 36 36 H 0.96994 * 120.00504 * 179.97438 * 13 12 10 37 37 H 1.08997 * 109.47124 * 284.21594 * 18 8 7 38 38 H 1.09006 * 109.46676 * 44.21302 * 18 8 7 39 39 H 1.09008 * 115.54826 * 28.85955 * 19 18 8 40 40 H 1.09001 * 117.50065 * 0.02562 * 20 19 18 41 41 H 1.08994 * 117.49787 * 145.02132 * 20 19 18 42 42 H 1.08998 * 117.50114 * 214.98027 * 21 19 18 43 43 H 1.08999 * 117.50024 * 0.02562 * 21 19 18 44 44 H 1.07997 * 119.97370 * 180.27403 * 22 6 4 45 45 H 1.09006 * 109.47124 * 355.17138 * 24 23 2 46 46 H 1.08996 * 109.46947 * 60.00056 * 25 24 23 47 47 H 1.09005 * 109.46715 * 179.97438 * 25 24 23 48 48 H 1.08995 * 109.46935 * 299.99457 * 25 24 23 49 49 H 1.09001 * 109.47194 * 60.00005 * 26 24 23 50 50 H 1.09005 * 109.47030 * 180.02562 * 26 24 23 51 51 H 1.08996 * 109.47264 * 300.00110 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1969 0.0000 4 6 3.5844 1.1962 -0.0005 5 8 4.2656 2.3722 -0.0011 6 6 4.2752 -0.0072 -0.0016 7 6 5.7822 -0.0116 -0.0016 8 7 6.2729 0.3465 -1.3392 9 6 7.7224 0.5843 -1.3220 10 6 8.0042 1.9249 -0.6939 11 1 7.1938 2.5118 -0.2874 12 6 9.2966 2.4019 -0.6380 13 7 10.2834 1.6874 -1.1332 14 14 9.6459 4.0634 0.1413 15 1 8.3745 4.6628 0.6199 16 1 10.5723 3.8869 1.2885 17 1 10.2690 4.9607 -0.8646 18 6 5.9203 -0.6857 -2.3231 19 6 6.0848 -0.1213 -3.7357 20 6 4.8308 -0.0196 -4.6063 21 6 5.8885 -1.0841 -4.9084 22 6 3.5805 -1.2010 0.0036 23 6 2.1977 -1.1976 -0.0005 24 6 1.4422 -2.5015 -0.0005 25 6 1.7169 -3.2500 -1.3064 26 6 1.8999 -3.3560 1.1832 27 1 -0.3633 -0.0973 1.0230 28 1 -0.3633 0.9346 -0.4272 29 1 -0.3633 -0.8372 -0.5959 30 1 1.6573 2.1323 0.0008 31 1 4.4631 2.7127 0.8821 32 1 6.1477 0.7134 0.7256 33 1 6.1426 -1.0055 0.2635 34 1 8.2121 -0.1985 -0.7427 35 1 8.1044 0.5739 -2.3428 36 1 11.1925 2.0232 -1.0942 37 1 6.5765 -1.5469 -2.1973 38 1 4.8852 -0.9926 -2.1727 39 1 6.8383 0.6587 -3.8455 40 1 3.8885 -0.3544 -4.1726 41 1 4.7595 0.8270 -5.2891 42 1 6.5125 -0.9374 -5.7899 43 1 5.6418 -2.1195 -4.6736 44 1 4.1177 -2.1379 0.0072 45 1 0.3740 -2.3026 0.0864 46 1 2.7850 -3.4489 -1.3933 47 1 1.1708 -4.1934 -1.3061 48 1 1.3908 -2.6413 -2.1496 49 1 1.7043 -2.8228 2.1135 50 1 1.3538 -4.2994 1.1829 51 1 2.9681 -3.5549 1.0962 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103459677.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:31 Heat of formation + Delta-G solvation = -7.236662 kcal Electronic energy + Delta-G solvation = -27806.919012 eV Core-core repulsion = 24285.518581 eV Total energy + Delta-G solvation = -3521.400431 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.09369 -37.70832 -37.17138 -35.49085 -34.43296 -32.94875 -32.03805 -28.85576 -28.31810 -27.48429 -27.22839 -25.28896 -23.37362 -23.20999 -21.98511 -21.38467 -20.80700 -19.67342 -19.17108 -17.39525 -16.50950 -16.22373 -15.47537 -15.06510 -14.96258 -14.60057 -14.38822 -14.14523 -13.92143 -13.76392 -13.49808 -13.27016 -13.02796 -12.87184 -12.66125 -12.39308 -12.34299 -12.20186 -11.96592 -11.74182 -11.53364 -11.28906 -11.15331 -11.07982 -10.98367 -10.78772 -10.77353 -10.59060 -10.49927 -10.41808 -10.00925 -9.86970 -9.58337 -9.39825 -9.12874 -8.47705 -8.35210 -7.99505 -7.10692 -5.94777 -3.94465 1.50533 1.55334 3.34815 3.42512 3.47302 3.78491 4.27608 4.49713 4.58008 4.65933 4.74728 4.96596 5.03415 5.11406 5.12012 5.29329 5.32875 5.36290 5.40614 5.42525 5.46501 5.51663 5.57006 5.64696 5.67921 5.74141 5.75360 5.84697 5.88819 5.96441 6.01672 6.05313 6.13493 6.15244 6.16015 6.20907 6.27809 6.31849 6.36160 6.48675 6.52817 6.58169 6.78677 6.87619 6.93313 7.10892 7.33144 7.39666 7.93407 8.17686 8.20826 8.30435 8.64454 9.15411 9.69022 11.16029 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012696 B = 0.004186 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.944752 B = 6687.507494 C = 7653.153759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.079 4.079 3 C -0.152 4.152 4 C 0.136 3.864 5 O -0.476 6.476 6 C -0.094 4.094 7 C 0.108 3.892 8 N -0.516 5.516 9 C 0.191 3.809 10 C -0.495 4.495 11 H 0.068 0.932 12 C 0.052 3.948 13 N -0.902 5.902 14 Si 0.895 3.105 15 H -0.272 1.272 16 H -0.287 1.287 17 H -0.286 1.286 18 C 0.085 3.915 19 C -0.126 4.126 20 C -0.177 4.177 21 C -0.190 4.190 22 C -0.096 4.096 23 C -0.093 4.093 24 C -0.057 4.057 25 C -0.144 4.144 26 C -0.144 4.144 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.122 0.878 31 H 0.382 0.618 32 H 0.089 0.911 33 H 0.023 0.977 34 H -0.013 1.013 35 H 0.035 0.965 36 H 0.259 0.741 37 H 0.022 0.978 38 H 0.061 0.939 39 H 0.113 0.887 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.118 0.882 45 H 0.079 0.921 46 H 0.056 0.944 47 H 0.054 0.946 48 H 0.055 0.945 49 H 0.054 0.946 50 H 0.054 0.946 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.901 -8.231 2.072 20.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.080 4.080 3 C -0.170 4.170 4 C 0.090 3.910 5 O -0.285 6.285 6 C -0.095 4.095 7 C -0.019 4.019 8 N -0.240 5.240 9 C 0.066 3.934 10 C -0.534 4.534 11 H 0.086 0.914 12 C -0.148 4.148 13 N -0.543 5.543 14 Si 0.723 3.277 15 H -0.196 1.196 16 H -0.214 1.214 17 H -0.212 1.212 18 C -0.043 4.043 19 C -0.145 4.145 20 C -0.214 4.214 21 C -0.228 4.228 22 C -0.115 4.115 23 C -0.093 4.093 24 C -0.076 4.076 25 C -0.201 4.201 26 C -0.201 4.201 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.140 0.860 31 H 0.238 0.762 32 H 0.107 0.893 33 H 0.042 0.958 34 H 0.004 0.996 35 H 0.053 0.947 36 H 0.068 0.932 37 H 0.041 0.959 38 H 0.080 0.920 39 H 0.131 0.869 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.104 0.896 44 H 0.136 0.864 45 H 0.097 0.903 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.074 0.926 49 H 0.074 0.926 50 H 0.073 0.927 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.945 -7.837 1.299 20.543 hybrid contribution 0.905 0.288 1.004 1.382 sum -18.040 -7.549 2.303 19.691 Atomic orbital electron populations 1.20786 0.91692 1.02454 1.01927 1.19468 0.95447 0.92156 1.00914 1.21251 0.93627 0.97819 1.04316 1.18249 0.89030 0.85595 0.98085 1.84973 1.76078 1.35146 1.32260 1.20427 0.96955 0.92293 0.99842 1.20770 0.88468 0.99029 0.93671 1.62061 1.18367 1.40503 1.03022 1.19798 0.80036 0.96046 0.97472 1.21263 0.92484 1.02862 1.36820 0.91388 1.24987 0.96310 0.97451 0.96053 1.69969 0.99704 1.37846 1.46746 0.86492 0.78151 0.84216 0.78835 1.19637 1.21380 1.21212 1.21595 0.99141 0.92666 0.90910 1.22309 0.99895 1.01328 0.90960 1.22890 0.93816 1.00729 1.04014 1.22929 1.03683 0.95652 1.00538 1.20748 0.93185 0.97164 1.00377 1.19536 0.93374 0.93891 1.02529 1.20140 0.99496 0.92246 0.95669 1.21846 1.02015 0.99497 0.96723 1.21856 1.01592 0.99006 0.97640 0.91527 0.91846 0.91426 0.86035 0.76215 0.89273 0.95840 0.99570 0.94652 0.93182 0.95947 0.92030 0.86861 0.89566 0.89493 0.89322 0.89577 0.86442 0.90258 0.92440 0.92700 0.92601 0.92642 0.92716 0.92415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 9.16 36.01 0.33 -0.71 16 2 C -0.08 -0.99 5.88 -104.64 -0.62 -1.60 16 3 C -0.15 -2.12 9.62 -39.43 -0.38 -2.50 16 4 C 0.14 2.21 6.68 -39.21 -0.26 1.95 16 5 O -0.48 -8.26 12.84 -19.43 -0.25 -8.51 16 6 C -0.09 -1.56 4.48 -104.47 -0.47 -2.03 16 7 C 0.11 2.09 4.53 -4.98 -0.02 2.07 16 8 N -0.52 -11.22 4.37 -237.51 -1.04 -12.26 16 9 C 0.19 4.98 4.54 -4.97 -0.02 4.95 16 10 C -0.50 -13.83 8.60 -34.44 -0.30 -14.13 16 11 H 0.07 1.89 7.67 -52.49 -0.40 1.49 16 12 C 0.05 1.48 5.46 -17.82 -0.10 1.39 16 13 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 14 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 15 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 C 0.09 1.64 5.11 -3.82 -0.02 1.62 16 19 C -0.13 -2.35 5.56 -90.63 -0.50 -2.85 16 20 C -0.18 -2.81 10.18 -26.70 -0.27 -3.08 16 21 C -0.19 -2.89 10.25 -26.69 -0.27 -3.16 16 22 C -0.10 -1.37 7.39 -39.60 -0.29 -1.66 16 23 C -0.09 -1.16 4.79 -104.60 -0.50 -1.66 16 24 C -0.06 -0.56 2.83 -91.77 -0.26 -0.82 16 25 C -0.14 -1.37 9.05 37.16 0.34 -1.03 16 26 C -0.14 -1.30 8.95 37.16 0.33 -0.97 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.55 8.05 -51.93 -0.42 0.13 16 29 H 0.07 0.56 6.50 -51.93 -0.34 0.22 16 30 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 31 H 0.38 5.03 9.06 45.56 0.41 5.44 16 32 H 0.09 1.84 7.19 -51.93 -0.37 1.47 16 33 H 0.02 0.44 7.93 -51.93 -0.41 0.03 16 34 H -0.01 -0.37 8.00 -51.93 -0.42 -0.79 16 35 H 0.04 0.99 6.46 -51.93 -0.34 0.66 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.02 0.44 8.05 -51.93 -0.42 0.02 16 38 H 0.06 1.11 5.88 -51.93 -0.31 0.80 16 39 H 0.11 2.43 6.89 -51.92 -0.36 2.07 16 40 H 0.09 1.32 8.03 -51.93 -0.42 0.90 16 41 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 43 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.12 1.58 7.04 -52.49 -0.37 1.21 16 45 H 0.08 0.70 5.68 -51.93 -0.29 0.40 16 46 H 0.06 0.59 7.70 -51.93 -0.40 0.19 16 47 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 50 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 51 H 0.06 0.55 7.12 -51.93 -0.37 0.18 16 LS Contribution 403.17 15.07 6.08 6.08 Total: -1.00 -31.21 403.17 -10.94 -42.15 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -8.15 Total: 6.21 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: -3.29 Total: -24.22 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: -0.30 Total: -38.45 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.25 Total: -8.51 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.21 -10.94 -42.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103459677.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.912 kcal (2) G-P(sol) polarization free energy of solvation -31.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds