Wall clock time and date at job start Tue Mar 31 2020 11:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38171 * 119.97113 * 2 1 4 4 C 1.38711 * 119.94162 * 180.02562 * 3 2 1 5 5 O 1.35902 * 120.05456 * 179.97438 * 4 3 2 6 6 C 1.38759 * 119.88837 * 0.02562 * 4 3 2 7 7 C 1.50698 * 120.02646 * 180.02562 * 6 4 3 8 8 N 1.46903 * 109.46821 * 284.99511 * 7 6 4 9 9 C 1.46904 * 110.99964 * 169.99963 * 8 7 6 10 10 C 1.50700 * 109.47139 * 284.45007 * 9 8 7 11 11 H 1.08001 * 120.00144 * 3.78106 * 10 9 8 12 12 C 1.37877 * 119.99632 * 183.77202 * 10 9 8 13 13 N 1.31510 * 120.00473 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99638 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47253 * 0.02562 * 14 12 10 16 16 H 1.48509 * 109.46553 * 120.00220 * 14 12 10 17 17 H 1.48494 * 109.47288 * 239.99982 * 14 12 10 18 18 C 1.46903 * 111.00220 * 293.95630 * 8 7 6 19 19 C 1.52999 * 109.47298 * 164.21156 * 18 8 7 20 20 C 1.52993 * 117.50200 * 243.18814 * 19 18 8 21 21 C 1.52996 * 117.49785 * 174.52484 * 19 18 8 22 22 C 1.38125 * 119.94419 * 359.72476 * 6 4 3 23 23 C 1.38246 * 119.97092 * 180.02562 * 2 1 3 24 24 C 1.50693 * 119.94316 * 359.97438 * 23 2 1 25 25 C 1.53002 * 109.47045 * 115.16915 * 24 23 2 26 26 C 1.52999 * 109.46998 * 235.16980 * 24 23 2 27 27 H 1.08991 * 109.47074 * 264.56440 * 1 2 3 28 28 H 1.08999 * 109.46977 * 24.56511 * 1 2 3 29 29 H 1.08999 * 109.47172 * 144.55930 * 1 2 3 30 30 H 1.07999 * 120.03023 * 0.04716 * 3 2 1 31 31 H 0.96696 * 114.00241 * 89.99760 * 5 4 3 32 32 H 1.08996 * 109.47258 * 44.99404 * 7 6 4 33 33 H 1.08997 * 109.47141 * 165.00005 * 7 6 4 34 34 H 1.08997 * 109.46563 * 44.45234 * 9 8 7 35 35 H 1.09001 * 109.46760 * 164.45298 * 9 8 7 36 36 H 0.96994 * 120.00504 * 179.97438 * 13 12 10 37 37 H 1.08997 * 109.47124 * 284.21594 * 18 8 7 38 38 H 1.09006 * 109.46676 * 44.21302 * 18 8 7 39 39 H 1.09008 * 115.54826 * 28.85955 * 19 18 8 40 40 H 1.09001 * 117.50065 * 0.02562 * 20 19 18 41 41 H 1.08994 * 117.49787 * 145.02132 * 20 19 18 42 42 H 1.08998 * 117.50114 * 214.98027 * 21 19 18 43 43 H 1.08999 * 117.50024 * 0.02562 * 21 19 18 44 44 H 1.07997 * 119.97370 * 180.27403 * 22 6 4 45 45 H 1.09006 * 109.47124 * 355.17138 * 24 23 2 46 46 H 1.08996 * 109.46947 * 60.00056 * 25 24 23 47 47 H 1.09005 * 109.46715 * 179.97438 * 25 24 23 48 48 H 1.08995 * 109.46935 * 299.99457 * 25 24 23 49 49 H 1.09001 * 109.47194 * 60.00005 * 26 24 23 50 50 H 1.09005 * 109.47030 * 180.02562 * 26 24 23 51 51 H 1.08996 * 109.47264 * 300.00110 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1969 0.0000 4 6 3.5844 1.1962 -0.0005 5 8 4.2656 2.3722 -0.0011 6 6 4.2752 -0.0072 -0.0016 7 6 5.7822 -0.0116 -0.0016 8 7 6.2729 0.3465 -1.3392 9 6 7.7224 0.5843 -1.3220 10 6 8.0042 1.9249 -0.6939 11 1 7.1938 2.5118 -0.2874 12 6 9.2966 2.4019 -0.6380 13 7 10.2834 1.6874 -1.1332 14 14 9.6459 4.0634 0.1413 15 1 8.3745 4.6628 0.6199 16 1 10.5723 3.8869 1.2885 17 1 10.2690 4.9607 -0.8646 18 6 5.9203 -0.6857 -2.3231 19 6 6.0848 -0.1213 -3.7357 20 6 4.8308 -0.0196 -4.6063 21 6 5.8885 -1.0841 -4.9084 22 6 3.5805 -1.2010 0.0036 23 6 2.1977 -1.1976 -0.0005 24 6 1.4422 -2.5015 -0.0005 25 6 1.7169 -3.2500 -1.3064 26 6 1.8999 -3.3560 1.1832 27 1 -0.3633 -0.0973 1.0230 28 1 -0.3633 0.9346 -0.4272 29 1 -0.3633 -0.8372 -0.5959 30 1 1.6573 2.1323 0.0008 31 1 4.4631 2.7127 0.8821 32 1 6.1477 0.7134 0.7256 33 1 6.1426 -1.0055 0.2635 34 1 8.2121 -0.1985 -0.7427 35 1 8.1044 0.5739 -2.3428 36 1 11.1925 2.0232 -1.0942 37 1 6.5765 -1.5469 -2.1973 38 1 4.8852 -0.9926 -2.1727 39 1 6.8383 0.6587 -3.8455 40 1 3.8885 -0.3544 -4.1726 41 1 4.7595 0.8270 -5.2891 42 1 6.5125 -0.9374 -5.7899 43 1 5.6418 -2.1195 -4.6736 44 1 4.1177 -2.1379 0.0072 45 1 0.3740 -2.3026 0.0864 46 1 2.7850 -3.4489 -1.3933 47 1 1.1708 -4.1934 -1.3061 48 1 1.3908 -2.6413 -2.1496 49 1 1.7043 -2.8228 2.1135 50 1 1.3538 -4.2994 1.1829 51 1 2.9681 -3.5549 1.0962 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103459677.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:30 Heat of formation + Delta-G solvation = -25.119688 kcal Electronic energy + Delta-G solvation = -27807.694478 eV Core-core repulsion = 24285.518581 eV Total energy + Delta-G solvation = -3522.175897 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.22913 -39.16719 -38.34031 -37.01600 -35.42140 -34.74557 -33.53662 -29.90993 -29.68489 -29.31508 -27.93464 -26.71627 -25.07585 -24.28616 -23.27971 -22.92822 -21.94614 -21.04237 -20.47409 -18.69312 -18.44914 -17.38450 -16.89875 -16.76083 -16.30801 -15.97017 -15.81615 -15.22174 -15.15528 -14.95421 -14.67051 -14.55749 -14.28835 -14.00803 -13.76085 -13.72450 -13.63078 -13.33902 -13.15857 -13.03918 -12.92559 -12.67969 -12.55523 -12.38328 -12.37600 -12.26919 -12.23317 -11.89304 -11.74103 -11.63383 -11.45510 -11.31803 -11.12683 -11.00816 -10.81431 -10.55851 -9.58960 -9.12210 -8.90588 -8.15461 -6.23928 0.39069 0.44174 1.40047 1.41547 1.55158 2.42343 2.66240 2.92771 3.16160 3.40583 3.49631 3.79141 3.80150 3.91721 3.95612 4.04949 4.17013 4.24264 4.25313 4.37757 4.47109 4.51400 4.58144 4.61867 4.66722 4.74029 4.74297 4.76727 4.81752 4.84381 4.90785 4.97587 4.99923 5.01425 5.04255 5.15084 5.17164 5.20924 5.26026 5.27151 5.33648 5.37429 5.40381 5.43652 5.53595 5.72354 5.73618 5.79377 6.05116 6.13830 6.43228 6.68779 6.92855 7.03792 7.44793 8.95437 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012696 B = 0.004186 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.944752 B = 6687.507494 C = 7653.153759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.073 4.073 3 C -0.155 4.155 4 C 0.116 3.884 5 O -0.501 6.501 6 C -0.115 4.115 7 C 0.115 3.885 8 N -0.521 5.521 9 C 0.210 3.790 10 C -0.508 4.508 11 H 0.065 0.935 12 C -0.001 4.001 13 N -0.938 5.938 14 Si 0.966 3.034 15 H -0.261 1.261 16 H -0.279 1.279 17 H -0.282 1.282 18 C 0.094 3.906 19 C -0.164 4.164 20 C -0.162 4.162 21 C -0.165 4.165 22 C -0.096 4.096 23 C -0.089 4.089 24 C -0.055 4.055 25 C -0.143 4.143 26 C -0.143 4.143 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.136 0.864 31 H 0.394 0.606 32 H 0.066 0.934 33 H 0.021 0.979 34 H -0.044 1.044 35 H 0.007 0.993 36 H 0.262 0.738 37 H 0.013 0.987 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.120 0.880 45 H 0.099 0.901 46 H 0.044 0.956 47 H 0.074 0.926 48 H 0.052 0.948 49 H 0.053 0.947 50 H 0.073 0.927 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.217 -8.781 2.097 23.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.073 4.073 3 C -0.174 4.174 4 C 0.071 3.929 5 O -0.312 6.312 6 C -0.116 4.116 7 C -0.013 4.013 8 N -0.245 5.245 9 C 0.084 3.916 10 C -0.546 4.546 11 H 0.083 0.917 12 C -0.198 4.198 13 N -0.580 5.580 14 Si 0.791 3.209 15 H -0.185 1.185 16 H -0.205 1.205 17 H -0.208 1.208 18 C -0.034 4.034 19 C -0.183 4.183 20 C -0.199 4.199 21 C -0.203 4.203 22 C -0.115 4.115 23 C -0.089 4.089 24 C -0.073 4.073 25 C -0.200 4.200 26 C -0.200 4.200 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.153 0.847 31 H 0.251 0.749 32 H 0.084 0.916 33 H 0.039 0.961 34 H -0.027 1.027 35 H 0.025 0.975 36 H 0.071 0.929 37 H 0.031 0.969 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.115 0.885 41 H 0.112 0.888 42 H 0.118 0.882 43 H 0.123 0.877 44 H 0.138 0.862 45 H 0.117 0.883 46 H 0.064 0.936 47 H 0.093 0.907 48 H 0.071 0.929 49 H 0.072 0.928 50 H 0.092 0.908 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -22.286 -8.394 1.333 23.852 hybrid contribution 1.865 0.396 0.998 2.152 sum -20.421 -7.998 2.331 22.055 Atomic orbital electron populations 1.20873 0.88852 1.03648 1.03385 1.19905 0.97442 0.91335 0.98629 1.21422 0.92556 0.99278 1.04112 1.18469 0.90094 0.84958 0.99360 1.84916 1.76639 1.35875 1.33742 1.20173 0.94836 0.93685 1.02911 1.20633 0.90954 0.97897 0.91785 1.61997 1.15227 1.42253 1.04992 1.19403 0.82676 0.94642 0.94896 1.21511 0.92713 1.03513 1.36885 0.91686 1.25881 0.95998 1.01442 0.96446 1.70100 1.00169 1.39822 1.47903 0.85376 0.78319 0.79220 0.77953 1.18535 1.20501 1.20847 1.21565 0.99549 0.91597 0.90719 1.22142 1.01483 1.02792 0.91900 1.22945 0.93179 1.01215 1.02541 1.23029 1.02553 0.96048 0.98643 1.20800 0.94244 0.96278 1.00188 1.19862 0.92636 0.95507 1.00925 1.20219 1.00119 0.90779 0.96152 1.21847 1.01551 1.00360 0.96280 1.21854 1.01209 0.99776 0.97207 0.89824 0.91009 0.89911 0.84654 0.74871 0.91573 0.96127 1.02653 0.97459 0.92950 0.96880 0.90408 0.90742 0.88505 0.88751 0.88159 0.87712 0.86172 0.88285 0.93648 0.90732 0.92916 0.92769 0.90837 0.93488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 9.16 71.24 0.65 -0.95 16 2 C -0.07 -1.61 5.88 -19.88 -0.12 -1.73 16 3 C -0.16 -4.12 9.62 22.37 0.22 -3.91 16 4 C 0.12 3.82 6.68 22.51 0.15 3.97 16 5 O -0.50 -17.97 12.84 -92.44 -1.19 -19.16 16 6 C -0.12 -3.89 4.48 -19.77 -0.09 -3.98 16 7 C 0.11 4.71 4.53 85.56 0.39 5.10 16 8 N -0.52 -24.05 4.37 -905.35 -3.96 -28.01 16 9 C 0.21 11.72 4.54 85.56 0.39 12.11 16 10 C -0.51 -29.75 8.60 25.60 0.22 -29.53 16 11 H 0.06 3.77 7.67 -2.91 -0.02 3.75 16 12 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 13 N -0.94 -58.13 13.29 21.45 0.28 -57.85 16 14 Si 0.97 45.68 29.54 68.60 2.03 47.70 16 15 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 16 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 17 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 18 C 0.09 3.74 5.11 86.30 0.44 4.18 16 19 C -0.16 -6.29 5.56 -10.80 -0.06 -6.35 16 20 C -0.16 -4.94 10.18 30.62 0.31 -4.62 16 21 C -0.17 -4.81 10.25 30.62 0.31 -4.50 16 22 C -0.10 -2.69 7.39 22.25 0.16 -2.53 16 23 C -0.09 -2.02 4.79 -19.85 -0.10 -2.12 16 24 C -0.05 -0.90 2.83 -11.54 -0.03 -0.93 16 25 C -0.14 -2.29 9.05 71.98 0.65 -1.64 16 26 C -0.14 -2.21 8.95 71.98 0.64 -1.57 16 27 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.07 0.95 8.05 -2.39 -0.02 0.93 16 29 H 0.08 0.98 6.50 -2.39 -0.02 0.96 16 30 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 31 H 0.39 10.95 9.06 -74.06 -0.67 10.28 16 32 H 0.07 2.95 7.19 -2.39 -0.02 2.93 16 33 H 0.02 0.83 7.93 -2.39 -0.02 0.81 16 34 H -0.04 -2.66 8.00 -2.39 -0.02 -2.68 16 35 H 0.01 0.44 6.46 -2.39 -0.02 0.43 16 36 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 37 H 0.01 0.54 8.05 -2.39 -0.02 0.52 16 38 H 0.08 2.81 5.88 -2.38 -0.01 2.80 16 39 H 0.07 3.43 6.89 -2.38 -0.02 3.41 16 40 H 0.10 2.75 8.03 -2.39 -0.02 2.74 16 41 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 42 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 43 H 0.10 2.67 8.14 -2.39 -0.02 2.66 16 44 H 0.12 3.22 7.04 -2.91 -0.02 3.20 16 45 H 0.10 1.28 5.68 -2.38 -0.01 1.27 16 46 H 0.04 0.83 7.70 -2.39 -0.02 0.82 16 47 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 48 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 50 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 51 H 0.05 0.82 7.12 -2.39 -0.02 0.81 16 Total: -1.00 -70.52 403.17 2.01 -68.51 By element: Atomic # 1 Polarization: 27.13 SS G_CDS: 0.23 Total: 27.37 kcal Atomic # 6 Polarization: -43.17 SS G_CDS: 4.61 Total: -38.56 kcal Atomic # 7 Polarization: -82.19 SS G_CDS: -3.68 Total: -85.86 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -1.19 Total: -19.16 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.70 kcal Total: -70.52 2.01 -68.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103459677.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.394 kcal (2) G-P(sol) polarization free energy of solvation -70.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds