Wall clock time and date at job start Tue Mar 31 2020 12:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47517 * 2 1 4 4 C 1.52995 * 109.47517 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47305 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47537 * 179.97438 * 5 4 3 7 7 C 1.52993 * 109.47520 * 179.97438 * 6 5 4 8 8 C 1.52995 * 109.47300 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47512 * 179.97438 * 8 7 6 10 10 C 1.50693 * 109.47459 * 180.02562 * 9 8 7 11 11 O 1.21284 * 119.99937 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00055 * 179.97438 * 10 9 8 13 13 C 1.39234 * 119.99787 * 184.28933 * 12 10 9 14 14 C 1.39480 * 119.83810 * 324.71162 * 13 12 10 15 15 C 1.36373 * 120.17151 * 180.29688 * 14 13 12 16 16 C 1.40869 * 119.82638 * 359.48095 * 15 14 13 17 17 C 1.41149 * 120.16615 * 180.24677 * 16 15 14 18 18 H 1.08002 * 120.00564 * 215.01718 * 17 16 15 19 19 C 1.39907 * 119.99949 * 35.01923 * 17 16 15 20 20 N 1.30873 * 119.99679 * 355.54737 * 19 17 16 21 21 Si 1.86795 * 120.00282 * 175.54331 * 19 17 16 22 22 H 1.48497 * 109.47333 * 59.99949 * 21 19 17 23 23 H 1.48503 * 109.47069 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47361 * 299.99743 * 21 19 17 25 25 C 1.40878 * 119.67448 * 0.51928 * 16 15 14 26 26 C 1.36371 * 119.82161 * 359.73123 * 25 16 15 27 27 H 1.08997 * 109.47494 * 300.00577 * 1 2 3 28 28 H 1.09005 * 109.46694 * 60.00539 * 1 2 3 29 29 H 1.08997 * 109.47383 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47494 * 239.99422 * 2 1 3 31 31 H 1.09010 * 109.46915 * 119.99854 * 2 1 3 32 32 H 1.08997 * 109.47210 * 59.99249 * 3 2 1 33 33 H 1.09004 * 109.46252 * 299.99750 * 3 2 1 34 34 H 1.08997 * 109.47494 * 59.99422 * 4 3 2 35 35 H 1.09005 * 109.46694 * 299.99461 * 4 3 2 36 36 H 1.08997 * 109.47338 * 59.99300 * 5 4 3 37 37 H 1.08996 * 109.46963 * 299.99636 * 5 4 3 38 38 H 1.09005 * 109.46451 * 59.99471 * 6 5 4 39 39 H 1.08996 * 109.46999 * 299.99984 * 6 5 4 40 40 H 1.08997 * 109.47023 * 59.99873 * 7 6 5 41 41 H 1.08996 * 109.47295 * 300.00199 * 7 6 5 42 42 H 1.09005 * 109.46981 * 60.00249 * 8 7 6 43 43 H 1.08996 * 109.47130 * 300.00326 * 8 7 6 44 44 H 1.09005 * 109.46772 * 60.00148 * 9 8 7 45 45 H 1.09001 * 109.46975 * 300.00995 * 9 8 7 46 46 H 0.96994 * 119.99721 * 4.29555 * 12 10 9 47 47 H 1.07997 * 119.91386 * 0.02562 * 14 13 12 48 48 H 1.08003 * 120.08733 * 179.70254 * 15 14 13 49 49 H 0.97006 * 120.00240 * 180.02562 * 20 19 17 50 50 H 1.07991 * 120.08734 * 179.71251 * 25 16 15 51 51 H 1.08005 * 119.91371 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8849 0.0000 6 6 5.6101 2.8850 0.0000 7 6 6.1201 4.3274 0.0000 8 6 7.6500 4.3274 0.0006 9 6 8.1601 5.7699 0.0000 10 6 9.6671 5.7699 0.0000 11 8 10.2735 4.7195 0.0000 12 7 10.3410 6.9371 -0.0010 13 6 11.7304 6.9386 -0.0912 14 6 12.4669 5.9269 0.5248 15 6 13.8284 5.9251 0.4459 16 6 14.4901 6.9425 -0.2693 17 6 15.8987 6.9447 -0.3599 18 1 16.4378 7.8805 -0.3689 19 6 16.5965 5.7346 -0.4382 20 7 15.9518 4.6000 -0.3398 21 14 18.4483 5.7384 -0.6834 22 1 19.0957 6.4534 0.4457 23 1 18.9439 4.3394 -0.7334 24 1 18.7775 6.4254 -1.9582 25 6 13.7394 7.9610 -0.8888 26 6 12.3788 7.9522 -0.7968 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 1.6767 1.9564 0.8899 33 1 1.6767 1.9562 -0.8901 34 1 3.9330 0.9287 -0.8908 35 1 3.9336 0.9286 0.8892 36 1 3.7170 3.3983 0.8903 37 1 3.7164 3.3992 -0.8895 38 1 5.9733 2.3714 -0.8902 39 1 5.9734 2.3708 0.8897 40 1 5.7567 4.8412 0.8900 41 1 5.7568 4.8412 -0.8899 42 1 8.0137 3.8134 -0.8892 43 1 8.0130 3.8137 0.8908 44 1 7.7964 6.2842 0.8896 45 1 7.7970 6.2832 -0.8904 46 1 9.8580 7.7759 0.0611 47 1 11.9580 5.1454 1.0693 48 1 14.3976 5.1438 0.9274 49 1 16.4356 3.7609 -0.3937 50 1 14.2401 8.7467 -1.4348 51 1 11.8019 8.7325 -1.2708 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106167531.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:07 Heat of formation + Delta-G solvation = -72.201689 kcal Electronic energy + Delta-G solvation = -24556.279764 eV Core-core repulsion = 21032.062239 eV Total energy + Delta-G solvation = -3524.217526 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.65126 -37.48200 -37.10482 -35.48768 -34.37447 -33.07109 -32.79037 -30.22932 -29.45383 -28.85028 -26.86290 -24.93856 -23.54250 -21.78659 -21.38557 -21.21169 -20.93169 -20.54300 -19.39730 -17.26117 -16.82138 -16.49448 -16.11357 -15.84029 -15.15318 -14.92794 -14.46480 -14.06723 -14.06545 -13.88541 -13.56665 -13.29940 -13.19474 -12.82236 -12.64332 -12.46519 -12.14183 -12.08944 -11.78148 -11.69098 -11.67005 -11.41914 -11.39772 -11.29115 -11.11452 -11.03850 -10.97488 -10.91474 -10.76425 -10.57464 -10.48956 -10.43371 -9.89320 -9.85694 -9.39537 -8.95904 -8.68609 -7.49678 -6.85301 -6.56504 -4.30505 2.62752 3.04551 3.11640 3.12751 3.14809 3.39554 3.78540 4.01086 4.30624 4.52517 4.67977 4.74072 4.75166 4.78354 4.89150 4.95923 5.04403 5.17428 5.17743 5.31964 5.37686 5.37838 5.45071 5.55954 5.59138 5.61631 5.65986 5.67949 5.70430 5.82422 5.84452 5.85368 5.88184 5.99707 6.04711 6.14452 6.15958 6.26387 6.38091 6.41711 6.84409 7.03846 7.07481 7.23327 7.33268 7.66475 7.71502 8.01978 8.11912 8.24338 8.37445 8.69949 8.83409 8.96132 9.05113 10.34557 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.027156 B = 0.001550 C = 0.001479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.831455 B =18060.105107 C =18928.322328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.121 4.121 4 C -0.122 4.122 5 C -0.119 4.119 6 C -0.121 4.121 7 C -0.119 4.119 8 C -0.104 4.104 9 C -0.138 4.138 10 C 0.495 3.505 11 O -0.529 6.529 12 N -0.657 5.657 13 C 0.005 3.995 14 C -0.094 4.094 15 C -0.144 4.144 16 C 0.100 3.900 17 C -0.465 4.465 18 H 0.075 0.925 19 C 0.069 3.931 20 N -0.808 5.808 21 Si 0.915 3.085 22 H -0.266 1.266 23 H -0.279 1.279 24 H -0.267 1.267 25 C -0.204 4.204 26 C -0.115 4.115 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.394 0.606 47 H 0.107 0.893 48 H 0.130 0.870 49 H 0.279 0.721 50 H 0.096 0.904 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.519 -3.219 1.146 24.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.160 4.160 5 C -0.157 4.157 6 C -0.159 4.159 7 C -0.156 4.156 8 C -0.142 4.142 9 C -0.178 4.178 10 C 0.282 3.718 11 O -0.405 6.405 12 N -0.300 5.300 13 C -0.087 4.087 14 C -0.114 4.114 15 C -0.164 4.164 16 C 0.097 3.903 17 C -0.495 4.495 18 H 0.093 0.907 19 C -0.146 4.146 20 N -0.435 5.435 21 Si 0.740 3.260 22 H -0.191 1.191 23 H -0.204 1.204 24 H -0.192 1.192 25 C -0.224 4.224 26 C -0.135 4.135 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.106 0.894 45 H 0.106 0.894 46 H 0.227 0.773 47 H 0.125 0.875 48 H 0.148 0.852 49 H 0.090 0.910 50 H 0.114 0.886 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -24.058 -4.251 1.130 24.457 hybrid contribution 0.574 0.423 -0.279 0.766 sum -23.484 -3.828 0.851 23.809 Atomic orbital electron populations 1.21781 0.96021 1.01520 1.01742 1.21551 0.95745 0.97110 1.02008 1.21634 0.95642 0.96601 1.01935 1.21628 0.95108 0.97092 1.02124 1.21608 0.95661 0.96559 1.01867 1.21603 0.94934 0.96973 1.02351 1.21611 0.95422 0.96790 1.01806 1.21338 0.94205 0.94951 1.03743 1.21663 0.92541 0.99839 1.03762 1.20697 0.89822 0.84095 0.77213 1.90708 1.69973 1.31254 1.48570 1.43061 1.06338 1.08118 1.72482 1.17321 0.80553 1.01846 1.09002 1.20644 0.94390 0.97183 0.99176 1.21303 0.92304 1.01572 1.01216 1.17718 0.93500 0.90639 0.88433 1.19442 0.91671 0.93162 1.45268 0.90711 1.25886 1.00656 0.95131 0.92919 1.69785 1.37546 0.98522 1.37683 0.86260 0.82041 0.77917 0.79753 1.19074 1.20436 1.19158 1.20687 0.92494 1.03063 1.06169 1.20079 0.94928 0.98317 1.00190 0.92817 0.92810 0.92873 0.92088 0.92092 0.92127 0.92132 0.92026 0.92039 0.92157 0.92151 0.91913 0.91913 0.92118 0.92108 0.91193 0.91208 0.89448 0.89385 0.77274 0.87509 0.85241 0.91042 0.88576 0.89206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.15 0.37 -0.45 16 2 C -0.13 -0.75 5.93 -26.73 -0.16 -0.91 16 3 C -0.12 -0.75 5.21 -26.73 -0.14 -0.89 16 4 C -0.12 -0.84 5.21 -26.74 -0.14 -0.98 16 5 C -0.12 -0.86 5.21 -26.73 -0.14 -1.00 16 6 C -0.12 -1.03 5.21 -26.73 -0.14 -1.16 16 7 C -0.12 -1.04 5.21 -26.74 -0.14 -1.18 16 8 C -0.10 -1.22 4.50 -26.73 -0.12 -1.34 16 9 C -0.14 -1.61 5.70 -27.89 -0.16 -1.77 16 10 C 0.49 8.68 7.66 -10.99 -0.08 8.59 16 11 O -0.53 -11.80 13.40 5.55 0.07 -11.72 16 12 N -0.66 -11.59 5.30 -9.74 -0.05 -11.64 16 13 C 0.01 0.11 6.31 -83.57 -0.53 -0.41 16 14 C -0.09 -2.39 8.61 -39.79 -0.34 -2.73 16 15 C -0.14 -3.93 8.61 -39.26 -0.34 -4.27 16 16 C 0.10 2.71 5.55 -106.80 -0.59 2.12 16 17 C -0.46 -12.57 9.02 -37.85 -0.34 -12.91 16 18 H 0.07 1.92 7.85 -52.49 -0.41 1.51 16 19 C 0.07 1.80 5.42 -17.34 -0.09 1.71 16 20 N -0.81 -21.89 10.61 55.55 0.59 -21.31 16 21 Si 0.92 19.34 29.56 -169.99 -5.03 14.32 16 22 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 23 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 24 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 25 C -0.20 -5.00 9.74 -39.26 -0.38 -5.39 16 26 C -0.11 -2.55 9.90 -39.79 -0.39 -2.94 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 43 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 44 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.39 5.30 8.82 -40.82 -0.36 4.94 16 47 H 0.11 2.73 6.22 -52.49 -0.33 2.40 16 48 H 0.13 3.70 6.15 -52.48 -0.32 3.37 16 49 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 50 H 0.10 2.19 8.06 -52.49 -0.42 1.76 16 51 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 411.21 15.07 6.20 6.20 Total: -1.00 -30.75 411.21 -11.51 -42.26 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -9.43 Total: 7.81 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: -3.86 Total: -25.91 kcal Atomic # 7 Polarization: -33.48 SS G_CDS: 0.54 Total: -32.95 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.07 Total: -11.72 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.03 Total: 14.32 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -30.75 -11.51 -42.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106167531.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.943 kcal (2) G-P(sol) polarization free energy of solvation -30.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds