Wall clock time and date at job start Tue Mar 31 2020 12:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47517 * 2 1 4 4 C 1.52995 * 109.47517 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47305 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47537 * 179.97438 * 5 4 3 7 7 C 1.52993 * 109.47520 * 179.97438 * 6 5 4 8 8 C 1.52995 * 109.47300 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47512 * 179.97438 * 8 7 6 10 10 C 1.50693 * 109.47459 * 180.02562 * 9 8 7 11 11 O 1.21284 * 119.99937 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00055 * 179.97438 * 10 9 8 13 13 C 1.39234 * 119.99787 * 184.28933 * 12 10 9 14 14 C 1.39480 * 119.83810 * 324.71162 * 13 12 10 15 15 C 1.36373 * 120.17151 * 180.29688 * 14 13 12 16 16 C 1.40869 * 119.82638 * 359.48095 * 15 14 13 17 17 C 1.41149 * 120.16615 * 180.24677 * 16 15 14 18 18 H 1.08002 * 120.00564 * 215.01718 * 17 16 15 19 19 C 1.39907 * 119.99949 * 35.01923 * 17 16 15 20 20 N 1.30873 * 119.99679 * 355.54737 * 19 17 16 21 21 Si 1.86795 * 120.00282 * 175.54331 * 19 17 16 22 22 H 1.48497 * 109.47333 * 59.99949 * 21 19 17 23 23 H 1.48503 * 109.47069 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47361 * 299.99743 * 21 19 17 25 25 C 1.40878 * 119.67448 * 0.51928 * 16 15 14 26 26 C 1.36371 * 119.82161 * 359.73123 * 25 16 15 27 27 H 1.08997 * 109.47494 * 300.00577 * 1 2 3 28 28 H 1.09005 * 109.46694 * 60.00539 * 1 2 3 29 29 H 1.08997 * 109.47383 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47494 * 239.99422 * 2 1 3 31 31 H 1.09010 * 109.46915 * 119.99854 * 2 1 3 32 32 H 1.08997 * 109.47210 * 59.99249 * 3 2 1 33 33 H 1.09004 * 109.46252 * 299.99750 * 3 2 1 34 34 H 1.08997 * 109.47494 * 59.99422 * 4 3 2 35 35 H 1.09005 * 109.46694 * 299.99461 * 4 3 2 36 36 H 1.08997 * 109.47338 * 59.99300 * 5 4 3 37 37 H 1.08996 * 109.46963 * 299.99636 * 5 4 3 38 38 H 1.09005 * 109.46451 * 59.99471 * 6 5 4 39 39 H 1.08996 * 109.46999 * 299.99984 * 6 5 4 40 40 H 1.08997 * 109.47023 * 59.99873 * 7 6 5 41 41 H 1.08996 * 109.47295 * 300.00199 * 7 6 5 42 42 H 1.09005 * 109.46981 * 60.00249 * 8 7 6 43 43 H 1.08996 * 109.47130 * 300.00326 * 8 7 6 44 44 H 1.09005 * 109.46772 * 60.00148 * 9 8 7 45 45 H 1.09001 * 109.46975 * 300.00995 * 9 8 7 46 46 H 0.96994 * 119.99721 * 4.29555 * 12 10 9 47 47 H 1.07997 * 119.91386 * 0.02562 * 14 13 12 48 48 H 1.08003 * 120.08733 * 179.70254 * 15 14 13 49 49 H 0.97006 * 120.00240 * 180.02562 * 20 19 17 50 50 H 1.07991 * 120.08734 * 179.71251 * 25 16 15 51 51 H 1.08005 * 119.91371 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8849 0.0000 6 6 5.6101 2.8850 0.0000 7 6 6.1201 4.3274 0.0000 8 6 7.6500 4.3274 0.0006 9 6 8.1601 5.7699 0.0000 10 6 9.6671 5.7699 0.0000 11 8 10.2735 4.7195 0.0000 12 7 10.3410 6.9371 -0.0010 13 6 11.7304 6.9386 -0.0912 14 6 12.4669 5.9269 0.5248 15 6 13.8284 5.9251 0.4459 16 6 14.4901 6.9425 -0.2693 17 6 15.8987 6.9447 -0.3599 18 1 16.4378 7.8805 -0.3689 19 6 16.5965 5.7346 -0.4382 20 7 15.9518 4.6000 -0.3398 21 14 18.4483 5.7384 -0.6834 22 1 19.0957 6.4534 0.4457 23 1 18.9439 4.3394 -0.7334 24 1 18.7775 6.4254 -1.9582 25 6 13.7394 7.9610 -0.8888 26 6 12.3788 7.9522 -0.7968 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 1.6767 1.9564 0.8899 33 1 1.6767 1.9562 -0.8901 34 1 3.9330 0.9287 -0.8908 35 1 3.9336 0.9286 0.8892 36 1 3.7170 3.3983 0.8903 37 1 3.7164 3.3992 -0.8895 38 1 5.9733 2.3714 -0.8902 39 1 5.9734 2.3708 0.8897 40 1 5.7567 4.8412 0.8900 41 1 5.7568 4.8412 -0.8899 42 1 8.0137 3.8134 -0.8892 43 1 8.0130 3.8137 0.8908 44 1 7.7964 6.2842 0.8896 45 1 7.7970 6.2832 -0.8904 46 1 9.8580 7.7759 0.0611 47 1 11.9580 5.1454 1.0693 48 1 14.3976 5.1438 0.9274 49 1 16.4356 3.7609 -0.3937 50 1 14.2401 8.7467 -1.4348 51 1 11.8019 8.7325 -1.2708 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106167531.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:06 Heat of formation + Delta-G solvation = -86.551215 kcal Electronic energy + Delta-G solvation = -24556.902007 eV Core-core repulsion = 21032.062239 eV Total energy + Delta-G solvation = -3524.839768 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.19754 -39.13750 -37.86535 -36.34614 -35.99501 -34.68240 -33.74470 -31.51446 -31.16992 -30.36267 -27.80756 -26.51680 -24.49177 -23.24478 -22.77266 -22.07010 -21.78088 -21.51361 -20.89641 -19.22833 -18.36842 -17.66199 -17.20472 -16.98378 -16.63696 -15.89909 -15.75133 -15.34379 -15.11507 -14.91006 -14.65164 -14.55645 -14.28863 -13.97704 -13.91449 -13.81146 -13.55434 -13.31555 -13.15205 -12.86081 -12.75952 -12.65981 -12.43746 -12.34480 -12.30254 -12.06116 -11.90027 -11.76461 -11.70943 -11.69607 -11.59318 -11.36301 -11.28370 -11.20445 -11.06570 -10.70486 -10.42261 -9.45701 -8.73769 -8.49630 -6.33110 0.82433 1.12568 1.38225 1.46720 1.51432 1.85231 2.23369 2.42156 2.82183 3.67565 3.69712 3.85908 3.98813 4.08102 4.09922 4.16771 4.28905 4.36731 4.43340 4.47783 4.49865 4.52356 4.65416 4.75976 4.78188 4.82872 4.88316 4.97045 4.99402 5.01849 5.05918 5.09669 5.12799 5.18257 5.22337 5.22938 5.23436 5.30556 5.34601 5.41505 5.42096 5.44830 5.51560 5.56224 5.59250 5.71089 5.88097 6.09018 6.15257 6.35844 6.70604 6.77305 6.95875 7.02665 7.47809 8.43304 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.027156 B = 0.001550 C = 0.001479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.831455 B =18060.105107 C =18928.322328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.128 4.128 3 C -0.117 4.117 4 C -0.122 4.122 5 C -0.114 4.114 6 C -0.123 4.123 7 C -0.109 4.109 8 C -0.104 4.104 9 C -0.123 4.123 10 C 0.489 3.511 11 O -0.583 6.583 12 N -0.647 5.647 13 C 0.019 3.981 14 C -0.110 4.110 15 C -0.169 4.169 16 C 0.064 3.936 17 C -0.499 4.499 18 H 0.080 0.920 19 C 0.022 3.978 20 N -0.849 5.849 21 Si 0.991 3.009 22 H -0.257 1.257 23 H -0.274 1.274 24 H -0.259 1.259 25 C -0.210 4.210 26 C -0.109 4.109 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.046 0.954 43 H 0.048 0.952 44 H 0.122 0.878 45 H 0.121 0.879 46 H 0.420 0.580 47 H 0.095 0.905 48 H 0.103 0.897 49 H 0.282 0.718 50 H 0.113 0.887 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.662 -1.139 0.427 26.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.166 4.166 3 C -0.155 4.155 4 C -0.160 4.160 5 C -0.151 4.151 6 C -0.160 4.160 7 C -0.146 4.146 8 C -0.142 4.142 9 C -0.162 4.162 10 C 0.279 3.721 11 O -0.463 6.463 12 N -0.293 5.293 13 C -0.075 4.075 14 C -0.131 4.131 15 C -0.189 4.189 16 C 0.062 3.938 17 C -0.529 4.529 18 H 0.098 0.902 19 C -0.189 4.189 20 N -0.477 5.477 21 Si 0.812 3.188 22 H -0.181 1.181 23 H -0.198 1.198 24 H -0.183 1.183 25 C -0.230 4.230 26 C -0.129 4.129 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.140 0.860 45 H 0.139 0.861 46 H 0.258 0.742 47 H 0.113 0.887 48 H 0.121 0.879 49 H 0.092 0.908 50 H 0.131 0.869 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -26.257 -2.125 0.419 26.346 hybrid contribution 1.064 -0.229 -0.038 1.089 sum -25.193 -2.354 0.381 25.305 Atomic orbital electron populations 1.21779 0.95476 1.01825 1.01946 1.21561 0.96253 0.96968 1.01796 1.21602 0.94972 0.96763 1.02137 1.21619 0.95694 0.96985 1.01663 1.21556 0.94417 0.96720 1.02417 1.21603 0.96014 0.96915 1.01493 1.21542 0.92762 0.97065 1.03243 1.21318 0.96450 0.94796 1.01639 1.21710 0.87318 1.00307 1.06896 1.21862 0.92275 0.82908 0.75092 1.90703 1.71639 1.33287 1.50686 1.43013 1.04331 1.09794 1.72161 1.17421 0.83010 1.00297 1.06753 1.20662 0.93986 0.98241 1.00178 1.21166 0.93144 1.01893 1.02686 1.18062 0.94363 0.91775 0.89589 1.19751 0.92205 0.93999 1.46987 0.90177 1.26860 1.05775 0.94293 0.91969 1.69916 1.39589 0.99240 1.38933 0.85116 0.75490 0.78182 0.80021 1.18089 1.19832 1.18322 1.20971 0.93727 1.02544 1.05709 1.20461 0.94382 0.98868 0.99144 0.92597 0.92608 0.92565 0.92339 0.92318 0.91869 0.91905 0.92547 0.92517 0.91515 0.91563 0.92905 0.92814 0.90532 0.90626 0.93553 0.93353 0.85965 0.86108 0.74237 0.88716 0.87918 0.90787 0.86906 0.84490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 71.98 0.71 -0.74 16 2 C -0.13 -1.41 5.93 30.59 0.18 -1.23 16 3 C -0.12 -1.30 5.21 30.59 0.16 -1.14 16 4 C -0.12 -1.56 5.21 30.59 0.16 -1.40 16 5 C -0.11 -1.43 5.21 30.59 0.16 -1.27 16 6 C -0.12 -1.94 5.21 30.59 0.16 -1.78 16 7 C -0.11 -1.62 5.21 30.59 0.16 -1.46 16 8 C -0.10 -2.30 4.50 30.59 0.14 -2.16 16 9 C -0.12 -2.45 5.70 29.85 0.17 -2.28 16 10 C 0.49 16.41 7.66 87.65 0.67 17.08 16 11 O -0.58 -26.57 13.40 -3.04 -0.04 -26.61 16 12 N -0.65 -21.20 5.30 -303.11 -1.61 -22.80 16 13 C 0.02 0.83 6.31 38.57 0.24 1.08 16 14 C -0.11 -5.81 8.61 22.13 0.19 -5.62 16 15 C -0.17 -9.72 8.61 22.48 0.19 -9.52 16 16 C 0.06 3.62 5.55 -21.27 -0.12 3.50 16 17 C -0.50 -27.80 9.02 23.39 0.21 -27.59 16 18 H 0.08 4.20 7.85 -2.91 -0.02 4.17 16 19 C 0.02 1.19 5.42 85.24 0.46 1.65 16 20 N -0.85 -48.25 10.61 21.82 0.23 -48.02 16 21 Si 0.99 40.35 29.56 68.60 2.03 42.38 16 22 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 23 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 24 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 25 C -0.21 -10.15 9.74 22.48 0.22 -9.93 16 26 C -0.11 -4.56 9.90 22.13 0.22 -4.35 16 27 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.67 8.14 -2.38 -0.02 0.66 16 34 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.05 1.23 8.10 -2.38 -0.02 1.21 16 43 H 0.05 1.26 8.10 -2.39 -0.02 1.24 16 44 H 0.12 1.70 8.14 -2.38 -0.02 1.68 16 45 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.42 9.47 8.82 -92.71 -0.82 8.65 16 47 H 0.09 5.12 6.22 -2.91 -0.02 5.10 16 48 H 0.10 6.35 6.15 -2.91 -0.02 6.33 16 49 H 0.28 14.73 8.30 -92.70 -0.77 13.97 16 50 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 51 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -71.74 411.21 4.96 -66.78 By element: Atomic # 1 Polarization: 35.42 SS G_CDS: 0.06 Total: 35.48 kcal Atomic # 6 Polarization: -51.48 SS G_CDS: 4.29 Total: -47.19 kcal Atomic # 7 Polarization: -69.45 SS G_CDS: -1.38 Total: -70.83 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.04 Total: -26.61 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Total: -71.74 4.96 -66.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106167531.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.775 kcal (2) G-P(sol) polarization free energy of solvation -71.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds