Wall clock time and date at job start Tue Mar 31 2020 12:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47274 * 2 1 4 4 C 1.53000 * 109.47210 * 239.99688 * 2 1 3 5 5 C 1.50704 * 109.47123 * 119.99702 * 2 1 3 6 6 C 1.38265 * 119.94533 * 59.99549 * 5 2 1 7 7 C 1.38138 * 120.05732 * 179.97438 * 6 5 2 8 8 C 1.38739 * 119.94527 * 0.02562 * 7 6 5 9 9 O 1.35897 * 120.05591 * 179.97438 * 8 7 6 10 10 C 1.42895 * 116.99826 * 179.97438 * 9 8 7 11 11 C 1.53005 * 109.47255 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47335 * 180.02562 * 11 10 9 13 13 N 1.46494 * 109.47158 * 179.97438 * 12 11 10 14 14 C 1.36934 * 120.00171 * 269.99638 * 13 12 11 15 15 H 1.08001 * 119.99767 * 140.53314 * 14 13 12 16 16 C 1.38806 * 119.99964 * 320.54068 * 14 13 12 17 17 N 1.31612 * 120.00311 * 340.27091 * 16 14 13 18 18 Si 1.86808 * 120.00031 * 160.27426 * 16 14 13 19 19 H 1.48495 * 109.46936 * 359.97438 * 18 16 14 20 20 H 1.48507 * 109.47040 * 119.99720 * 18 16 14 21 21 H 1.48501 * 109.47302 * 239.99950 * 18 16 14 22 22 C 1.46502 * 120.00174 * 89.99788 * 13 12 11 23 23 C 1.52997 * 117.50203 * 183.28936 * 22 13 12 24 24 C 1.52997 * 117.50023 * 114.66451 * 22 13 12 25 25 C 1.38731 * 119.88424 * 0.27321 * 8 7 6 26 26 C 1.38148 * 119.94402 * 359.46672 * 25 8 7 27 27 H 1.08994 * 109.47208 * 300.00191 * 1 2 3 28 28 H 1.08999 * 109.46733 * 60.00528 * 1 2 3 29 29 H 1.09003 * 109.46984 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47621 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.46782 * 299.99799 * 3 2 1 32 32 H 1.08997 * 109.47218 * 59.99246 * 3 2 1 33 33 H 1.08997 * 109.46759 * 299.99747 * 4 2 1 34 34 H 1.08995 * 109.47015 * 60.00435 * 4 2 1 35 35 H 1.09007 * 109.47086 * 180.02562 * 4 2 1 36 36 H 1.08003 * 119.97323 * 359.97438 * 6 5 2 37 37 H 1.08001 * 120.03012 * 179.97438 * 7 6 5 38 38 H 1.08995 * 109.47447 * 60.00044 * 10 9 8 39 39 H 1.08999 * 109.47445 * 299.99798 * 10 9 8 40 40 H 1.08995 * 109.47029 * 59.99578 * 11 10 9 41 41 H 1.08999 * 109.46557 * 300.00130 * 11 10 9 42 42 H 1.09002 * 109.47168 * 59.99621 * 12 11 10 43 43 H 1.09006 * 109.46676 * 300.00136 * 12 11 10 44 44 H 0.97000 * 120.00354 * 175.01413 * 17 16 14 45 45 H 1.09008 * 115.54694 * 329.00129 * 22 13 12 46 46 H 1.08996 * 117.49829 * 359.97438 * 23 22 13 47 47 H 1.08995 * 117.50052 * 145.02543 * 23 22 13 48 48 H 1.09002 * 117.50243 * 214.98368 * 24 22 13 49 49 H 1.09002 * 117.49904 * 359.97438 * 24 22 13 50 50 H 1.08002 * 120.02419 * 179.72683 * 25 8 7 51 51 H 1.08001 * 119.96931 * 180.23458 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.6975 -2.0341 1.4483 7 6 2.1572 -2.6876 2.5752 8 6 2.9549 -2.0145 3.4891 9 8 3.4079 -2.6551 4.5988 10 6 4.2249 -1.9000 5.4956 11 6 4.6365 -2.7822 6.6761 12 6 5.5107 -1.9736 7.6367 13 7 5.9042 -2.8181 8.7672 14 6 5.1200 -2.8703 9.8885 15 1 4.9696 -3.8100 10.3990 16 6 4.5182 -1.7154 10.3688 17 7 4.9823 -0.5356 10.0156 18 14 3.0494 -1.8356 11.5169 19 1 2.7253 -3.2646 11.7578 20 1 3.3747 -1.1768 12.8075 21 1 1.8804 -1.1610 10.8975 22 6 7.1369 -3.6068 8.6981 23 6 7.4536 -4.5274 9.8784 24 6 8.2622 -3.2454 9.6697 25 6 3.2843 -0.6845 3.2714 26 6 2.8265 -0.0370 2.1402 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9563 0.8899 33 1 1.6767 -1.7490 -1.2491 34 1 1.6767 -0.2075 -2.1392 35 1 3.1301 -0.7217 -1.2489 36 1 1.0761 -2.5576 0.7368 37 1 1.8950 -3.7215 2.7451 38 1 3.6637 -1.0406 5.8622 39 1 5.1166 -1.5552 4.9720 40 1 5.1978 -3.6414 6.3091 41 1 3.7450 -3.1274 7.1997 42 1 4.9489 -1.1145 8.0035 43 1 6.4022 -1.6280 7.1131 44 1 4.5191 0.2706 10.2920 45 1 7.4216 -3.9479 7.7027 46 1 6.7451 -4.5459 10.7064 47 1 7.9467 -5.4745 9.6597 48 1 9.2872 -3.3491 9.3137 49 1 8.0856 -2.4205 10.3600 50 1 3.9015 -0.1571 3.9837 51 1 3.0858 0.9972 1.9684 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109868817.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:40 Heat of formation + Delta-G solvation = 11.850205 kcal Electronic energy + Delta-G solvation = -26100.988009 eV Core-core repulsion = 22580.415246 eV Total energy + Delta-G solvation = -3520.572762 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.26944 -38.52302 -37.07105 -35.66761 -33.96338 -32.07806 -31.19262 -29.86459 -28.71432 -27.60708 -27.46912 -25.55167 -23.85458 -22.68264 -22.17424 -21.36753 -20.63203 -19.66432 -19.30015 -18.08836 -16.35725 -15.93069 -15.79033 -15.64826 -15.28921 -14.76196 -14.64188 -14.46608 -14.03021 -13.92464 -13.53037 -13.24148 -13.17369 -12.91769 -12.66679 -12.56409 -12.16496 -12.07619 -11.97570 -11.91205 -11.74430 -11.40363 -11.20205 -11.05603 -10.83612 -10.80834 -10.73318 -10.67112 -10.49017 -10.37529 -10.13683 -10.05536 -9.64247 -9.55799 -9.26421 -8.96626 -8.50445 -7.95803 -6.56236 -5.81756 -3.48592 1.37287 1.47730 3.31353 3.41085 3.43743 3.47355 3.77681 4.42123 4.44958 4.55198 4.78886 4.90359 4.94464 4.98811 5.10142 5.21631 5.29501 5.31067 5.35341 5.37987 5.42684 5.47687 5.52513 5.60713 5.63977 5.66619 5.70356 5.76069 5.83862 5.89168 5.92582 6.02319 6.05759 6.08206 6.11909 6.25834 6.31512 6.35865 6.46144 6.48755 6.52335 6.62753 6.67654 6.68539 6.86764 7.04864 7.10878 7.24564 7.55740 7.66909 7.77470 8.46894 9.12081 9.72940 10.31553 11.13027 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017783 B = 0.002423 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.118679 B =11555.188877 C =12252.716282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.024 4.024 3 C -0.144 4.144 4 C -0.138 4.138 5 C -0.120 4.120 6 C -0.078 4.078 7 C -0.157 4.157 8 C 0.136 3.864 9 O -0.316 6.316 10 C 0.064 3.936 11 C -0.133 4.133 12 C 0.155 3.845 13 N -0.550 5.550 14 C -0.258 4.258 15 H 0.064 0.936 16 C 0.014 3.986 17 N -0.884 5.884 18 Si 0.895 3.105 19 H -0.275 1.275 20 H -0.289 1.289 21 H -0.287 1.287 22 C 0.120 3.880 23 C -0.195 4.195 24 C -0.221 4.221 25 C -0.208 4.208 26 C -0.080 4.080 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.070 0.930 42 H 0.095 0.905 43 H 0.028 0.972 44 H 0.254 0.746 45 H 0.086 0.914 46 H 0.097 0.903 47 H 0.073 0.927 48 H 0.069 0.931 49 H 0.092 0.908 50 H 0.129 0.871 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.230 1.285 -20.287 20.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.024 4.024 3 C -0.202 4.202 4 C -0.195 4.195 5 C -0.120 4.120 6 C -0.096 4.096 7 C -0.175 4.175 8 C 0.090 3.910 9 O -0.229 6.229 10 C -0.012 4.012 11 C -0.173 4.173 12 C 0.029 3.971 13 N -0.267 5.267 14 C -0.388 4.388 15 H 0.082 0.918 16 C -0.186 4.186 17 N -0.525 5.525 18 Si 0.723 3.277 19 H -0.199 1.199 20 H -0.215 1.215 21 H -0.213 1.213 22 C 0.011 3.989 23 C -0.234 4.234 24 C -0.262 4.262 25 C -0.227 4.227 26 C -0.098 4.098 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.141 0.859 37 H 0.145 0.855 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.089 0.911 42 H 0.113 0.887 43 H 0.047 0.953 44 H 0.064 0.936 45 H 0.104 0.896 46 H 0.115 0.885 47 H 0.092 0.908 48 H 0.087 0.913 49 H 0.110 0.890 50 H 0.147 0.853 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.291 1.273 -20.107 20.830 hybrid contribution -0.594 0.235 0.762 0.994 sum -5.884 1.508 -19.345 20.276 Atomic orbital electron populations 1.21894 0.93985 1.01964 1.01709 1.19395 0.95443 0.94854 0.92689 1.21964 1.01213 0.95148 1.01826 1.21892 1.01262 1.00149 0.96207 1.19619 1.00985 0.94402 0.97005 1.20696 0.98680 0.93949 0.96240 1.20420 1.01489 1.00819 0.94807 1.19145 0.93537 0.91065 0.87299 1.86123 1.64917 1.40907 1.30963 1.22976 0.92656 0.95593 0.89932 1.22313 1.02016 0.99159 0.93852 1.20738 0.95569 0.94619 0.86194 1.43301 1.19369 1.50363 1.13638 1.19069 1.23391 0.92459 1.03867 0.91797 1.25243 1.00286 0.95372 0.97728 1.70064 1.37479 0.96839 1.48143 0.86367 0.82847 0.77947 0.80501 1.19926 1.21548 1.21305 1.21233 0.88460 0.97369 0.91836 1.23016 1.04122 0.92965 1.03269 1.23345 0.95763 0.99152 1.07922 1.21359 1.06066 0.94584 1.00674 1.20950 0.96204 0.99682 0.92991 0.92487 0.92597 0.92506 0.92276 0.92555 0.92246 0.92515 0.92603 0.92522 0.85924 0.85460 0.92112 0.92612 0.92660 0.91104 0.88708 0.95320 0.93590 0.89629 0.88472 0.90808 0.91290 0.88984 0.85277 0.85654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.29 37.16 0.31 -0.76 16 2 C -0.02 -0.20 0.85 -155.66 -0.13 -0.33 16 3 C -0.14 -1.10 7.13 37.16 0.26 -0.84 16 4 C -0.14 -1.04 8.29 37.16 0.31 -0.73 16 5 C -0.12 -1.30 4.76 -104.60 -0.50 -1.80 16 6 C -0.08 -0.87 8.70 -39.61 -0.34 -1.21 16 7 C -0.16 -2.07 9.99 -39.43 -0.39 -2.46 16 8 C 0.14 2.05 6.69 -39.21 -0.26 1.78 16 9 O -0.32 -5.39 10.14 -19.42 -0.20 -5.58 16 10 C 0.06 1.07 4.74 37.16 0.18 1.24 16 11 C -0.13 -2.59 5.91 -26.73 -0.16 -2.75 16 12 C 0.16 3.47 5.33 -4.04 -0.02 3.44 16 13 N -0.55 -13.37 2.75 -165.66 -0.46 -13.83 16 14 C -0.26 -6.84 8.47 -15.06 -0.13 -6.97 16 15 H 0.06 1.71 6.75 -52.49 -0.35 1.36 16 16 C 0.01 0.39 4.98 -17.44 -0.09 0.30 16 17 N -0.88 -24.64 11.50 55.49 0.64 -24.00 16 18 Si 0.89 21.21 29.60 -169.99 -5.03 16.18 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 C 0.12 2.57 6.56 -67.93 -0.45 2.12 16 23 C -0.20 -3.90 9.80 -26.73 -0.26 -4.16 16 24 C -0.22 -4.55 10.36 -26.73 -0.28 -4.82 16 25 C -0.21 -2.85 9.04 -39.43 -0.36 -3.20 16 26 C -0.08 -0.95 8.97 -39.61 -0.36 -1.30 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.42 7.38 -51.93 -0.38 0.04 16 30 H 0.06 0.45 7.51 -51.93 -0.39 0.06 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.46 7.51 -51.93 -0.39 0.07 16 33 H 0.06 0.41 7.38 -51.93 -0.38 0.03 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.12 1.09 7.09 -52.48 -0.37 0.72 16 37 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 38 H 0.06 1.02 7.65 -51.93 -0.40 0.62 16 39 H 0.06 0.85 7.68 -51.93 -0.40 0.45 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.10 2.38 5.59 -51.93 -0.29 2.09 16 43 H 0.03 0.60 8.07 -51.93 -0.42 0.18 16 44 H 0.25 6.83 8.32 -40.82 -0.34 6.49 16 45 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 46 H 0.10 2.11 6.46 -51.93 -0.34 1.77 16 47 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 48 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 49 H 0.09 2.17 8.14 -51.93 -0.42 1.74 16 50 H 0.13 1.70 6.30 -52.49 -0.33 1.37 16 51 H 0.13 1.24 5.89 -52.49 -0.31 0.93 16 LS Contribution 401.36 15.07 6.05 6.05 Total: -1.00 -28.38 401.36 -10.62 -39.01 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -8.96 Total: 4.62 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: -2.67 Total: -22.44 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.18 Total: -37.83 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -0.20 Total: -5.58 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -28.38 -10.62 -39.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109868817.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.859 kcal (2) G-P(sol) polarization free energy of solvation -28.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds