Wall clock time and date at job start Tue Mar 31 2020 11:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99862 * 2 1 4 4 H 1.48499 * 109.47203 * 269.99674 * 3 2 1 5 5 H 1.48498 * 109.47118 * 30.00247 * 3 2 1 6 6 H 1.48505 * 109.46785 * 150.00010 * 3 2 1 7 7 C 1.37879 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00101 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99884 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47126 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.47236 * 180.02562 * 10 9 7 12 12 N 1.46899 * 109.47024 * 181.28069 * 11 10 9 13 13 C 1.46894 * 111.00010 * 288.23531 * 12 11 10 14 14 C 1.50703 * 109.47163 * 170.00116 * 13 12 11 15 15 C 1.38228 * 120.00298 * 269.72739 * 14 13 12 16 16 C 1.38235 * 120.00371 * 179.76135 * 15 14 13 17 17 C 1.38241 * 119.99519 * 0.51617 * 16 15 14 18 18 C 1.38234 * 120.00130 * 359.73541 * 17 16 15 19 19 C 1.38236 * 119.99515 * 90.00157 * 14 13 12 20 20 C 1.46907 * 110.99751 * 164.28501 * 12 11 10 21 21 C 1.52996 * 109.46900 * 288.18653 * 20 12 11 22 22 C 1.53171 * 109.54613 * 296.66839 * 21 20 12 23 23 C 1.53097 * 109.16639 * 183.15398 * 22 21 20 24 24 O 1.42906 * 109.41224 * 57.60677 * 23 22 21 25 25 C 1.42901 * 114.09648 * 298.84146 * 24 23 22 26 26 C 1.53094 * 109.41377 * 61.16455 * 25 24 23 27 27 H 0.97001 * 119.99864 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.47024 * 60.00496 * 9 7 2 29 29 H 1.09002 * 109.47772 * 300.00771 * 9 7 2 30 30 H 1.08999 * 109.47036 * 60.00760 * 10 9 7 31 31 H 1.08998 * 109.47527 * 300.00462 * 10 9 7 32 32 H 1.08996 * 109.46706 * 61.27911 * 11 10 9 33 33 H 1.08995 * 109.46971 * 301.28371 * 11 10 9 34 34 H 1.08998 * 109.47857 * 290.00223 * 13 12 11 35 35 H 1.09002 * 109.47313 * 50.00303 * 13 12 11 36 36 H 1.08004 * 119.99602 * 0.02562 * 15 14 13 37 37 H 1.07997 * 120.00278 * 180.22892 * 16 15 14 38 38 H 1.07999 * 119.99681 * 179.72143 * 17 16 15 39 39 H 1.07996 * 119.99888 * 179.97438 * 18 17 16 40 40 H 1.07995 * 120.00614 * 0.02562 * 19 14 13 41 41 H 1.08997 * 109.46793 * 168.18591 * 20 12 11 42 42 H 1.08998 * 109.46970 * 48.18602 * 20 12 11 43 43 H 1.09001 * 109.61654 * 56.89236 * 21 20 12 44 44 H 1.08999 * 109.52167 * 303.05793 * 22 21 20 45 45 H 1.09003 * 109.52540 * 63.24522 * 22 21 20 46 46 H 1.08997 * 109.47607 * 297.62821 * 23 22 21 47 47 H 1.09002 * 109.47971 * 177.58990 * 23 22 21 48 48 H 1.08998 * 109.48249 * 301.17441 * 25 24 23 49 49 H 1.08998 * 109.48456 * 181.14444 * 25 24 23 50 50 H 1.09005 * 109.51816 * 182.48600 * 26 25 24 51 51 H 1.08994 * 109.52951 * 62.29257 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6365 0.0001 11 6 5.5516 -2.6366 0.0001 12 7 6.0412 -4.0212 -0.0307 13 6 5.8120 -4.6894 1.2572 14 6 6.0961 -6.1627 1.1163 15 6 5.0828 -7.0305 0.7547 16 6 5.3445 -8.3813 0.6207 17 6 6.6172 -8.8656 0.8587 18 6 7.6294 -7.9985 1.2255 19 6 7.3688 -6.6470 1.3543 20 6 7.4614 -4.0692 -0.4033 21 6 7.6108 -3.7312 -1.8880 22 6 6.8989 -4.7946 -2.7297 23 6 7.1203 -4.4918 -4.2141 24 8 8.5225 -4.4562 -4.4876 25 6 9.2327 -3.4491 -3.7641 26 6 9.0962 -3.7101 -2.2617 27 1 -0.4850 0.8401 -0.0004 28 1 3.8752 -0.6797 0.8895 29 1 3.8746 -0.6807 -0.8904 30 1 3.6579 -3.1505 -0.8897 31 1 3.6585 -3.1503 0.8902 32 1 5.9148 -2.1427 0.9013 33 1 5.9149 -2.1030 -0.8781 34 1 6.4735 -4.2624 2.0110 35 1 4.7750 -4.5468 1.5611 36 1 4.0875 -6.6526 0.5727 37 1 4.5536 -9.0588 0.3345 38 1 6.8206 -9.9215 0.7584 39 1 8.6235 -8.3770 1.4118 40 1 8.1594 -5.9697 1.6416 41 1 7.8522 -5.0696 -0.2172 42 1 8.0178 -3.3452 0.1919 43 1 7.1709 -2.7540 -2.0869 44 1 7.3055 -5.7781 -2.4941 45 1 5.8314 -4.7786 -2.5100 46 1 6.6778 -3.5260 -4.4579 47 1 6.6518 -5.2694 -4.8175 48 1 8.8178 -2.4697 -4.0021 49 1 10.2859 -3.4754 -4.0433 50 1 9.6001 -2.9184 -1.7073 51 1 9.5471 -4.6716 -2.0165 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111261599.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:51 Heat of formation + Delta-G solvation = -39.530499 kcal Electronic energy + Delta-G solvation = -27214.977568 eV Core-core repulsion = 23692.176772 eV Total energy + Delta-G solvation = -3522.800797 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.90347 -39.18663 -37.46322 -34.39072 -33.57044 -32.03723 -31.14392 -30.98044 -30.79366 -27.79129 -26.94830 -24.71912 -23.55816 -23.04235 -22.45386 -21.72222 -20.64115 -20.13208 -19.64706 -16.87752 -16.72538 -16.29892 -16.05280 -15.71131 -15.33473 -15.16934 -14.72928 -14.71508 -14.60373 -14.13621 -14.06567 -13.48600 -13.40766 -13.24862 -12.66825 -12.63711 -12.56618 -12.35488 -12.12602 -11.93319 -11.79338 -11.49702 -11.35872 -11.17070 -11.03964 -10.94056 -10.82171 -10.62606 -10.49474 -10.25997 -9.89573 -9.66783 -9.60358 -9.51594 -9.17105 -8.93100 -8.79516 -8.53162 -8.12226 -6.03601 -4.01198 1.29786 1.37371 3.29992 3.37474 3.40617 3.65142 3.82464 4.15577 4.45278 4.63458 4.71959 4.78782 4.81932 4.86788 4.95143 4.99682 5.06207 5.19470 5.26498 5.30438 5.32300 5.36302 5.45459 5.50233 5.51074 5.56456 5.62796 5.65129 5.70786 5.77325 5.83034 5.88219 5.90661 5.99020 6.02602 6.06319 6.17470 6.28732 6.38160 6.40194 6.47200 6.52793 6.58086 6.64064 6.91708 6.96324 7.13947 7.22426 7.25576 7.36814 7.47146 7.81105 8.55658 9.02096 9.59217 11.10008 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009364 B = 0.003873 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2989.493753 B = 7227.254081 C = 9238.437177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.517 4.517 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.095 4.095 11 C 0.051 3.949 12 N -0.527 5.527 13 C 0.088 3.912 14 C -0.068 4.068 15 C -0.096 4.096 16 C -0.121 4.121 17 C -0.126 4.126 18 C -0.124 4.124 19 C -0.118 4.118 20 C 0.054 3.946 21 C -0.084 4.084 22 C -0.136 4.136 23 C 0.057 3.943 24 O -0.388 6.388 25 C 0.063 3.937 26 C -0.150 4.150 27 H 0.262 0.738 28 H 0.012 0.988 29 H 0.010 0.990 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.029 0.971 33 H 0.071 0.929 34 H 0.038 0.962 35 H 0.092 0.908 36 H 0.126 0.874 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.078 0.922 42 H 0.029 0.971 43 H 0.073 0.927 44 H 0.064 0.936 45 H 0.088 0.912 46 H 0.050 0.950 47 H 0.091 0.909 48 H 0.049 0.951 49 H 0.089 0.911 50 H 0.069 0.931 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.765 -13.874 -1.353 24.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.555 4.555 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.133 4.133 11 C -0.076 4.076 12 N -0.251 5.251 13 C -0.039 4.039 14 C -0.068 4.068 15 C -0.115 4.115 16 C -0.139 4.139 17 C -0.144 4.144 18 C -0.142 4.142 19 C -0.136 4.136 20 C -0.074 4.074 21 C -0.103 4.103 22 C -0.174 4.174 23 C -0.019 4.019 24 O -0.307 6.307 25 C -0.014 4.014 26 C -0.188 4.188 27 H 0.072 0.928 28 H 0.030 0.970 29 H 0.028 0.972 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.047 0.953 33 H 0.089 0.911 34 H 0.056 0.944 35 H 0.110 0.890 36 H 0.143 0.857 37 H 0.138 0.862 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.097 0.903 42 H 0.047 0.953 43 H 0.092 0.908 44 H 0.082 0.918 45 H 0.107 0.893 46 H 0.068 0.932 47 H 0.109 0.891 48 H 0.067 0.933 49 H 0.107 0.893 50 H 0.088 0.912 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 19.425 -14.113 -1.829 24.080 hybrid contribution 0.678 1.590 0.870 1.935 sum 20.103 -12.523 -0.959 23.704 Atomic orbital electron populations 1.69920 1.06288 1.26807 1.51357 1.25036 0.94710 0.99118 0.94668 0.86786 0.80321 0.83741 0.78460 1.20330 1.21441 1.19127 1.21140 0.89506 0.94409 1.50486 0.91041 1.19549 0.97164 0.92407 0.95977 1.21447 0.90934 0.99347 1.01544 1.22387 0.98075 0.86934 1.00163 1.62019 1.16633 1.17319 1.29101 1.21120 1.02569 0.89716 0.90480 1.19806 0.93350 0.95292 0.98376 1.21114 0.99456 0.92928 0.97955 1.21166 0.96841 0.95653 1.00221 1.21102 0.93421 0.99451 1.00407 1.21057 0.99006 0.93508 1.00630 1.21035 0.96271 0.95437 1.00900 1.22244 0.88968 1.01209 0.94956 1.21184 0.94512 0.99850 0.94776 1.22060 1.02695 0.98663 0.93956 1.22672 0.81506 1.01420 0.96339 1.87896 1.20467 1.56152 1.66146 1.22515 0.96876 0.91152 0.90891 1.22216 0.97052 1.02604 0.96970 0.92792 0.96958 0.97211 0.92011 0.92974 0.95309 0.91077 0.94373 0.88977 0.85650 0.86210 0.86506 0.86508 0.86661 0.90341 0.95258 0.90846 0.91761 0.89330 0.93203 0.89115 0.93300 0.89277 0.91239 0.91205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.99 13.96 55.43 0.77 -27.22 16 2 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 7 C -0.52 -14.73 9.66 -34.44 -0.33 -15.06 16 8 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 9 C -0.01 -0.31 4.04 -27.89 -0.11 -0.42 16 10 C -0.09 -1.82 5.18 -26.73 -0.14 -1.96 16 11 C 0.05 0.80 4.81 -3.82 -0.02 0.78 16 12 N -0.53 -7.05 3.86 -236.07 -0.91 -7.96 16 13 C 0.09 1.13 4.97 -4.98 -0.02 1.10 16 14 C -0.07 -0.81 4.93 -104.63 -0.52 -1.32 16 15 C -0.10 -1.14 9.70 -39.59 -0.38 -1.53 16 16 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 17 C -0.13 -1.23 10.05 -39.58 -0.40 -1.62 16 18 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 19 C -0.12 -1.26 7.85 -39.58 -0.31 -1.57 16 20 C 0.05 0.63 4.22 -3.82 -0.02 0.61 16 21 C -0.08 -0.95 2.27 -90.44 -0.21 -1.16 16 22 C -0.14 -1.60 5.25 -26.59 -0.14 -1.74 16 23 C 0.06 0.65 6.84 37.21 0.25 0.90 16 24 O -0.39 -4.74 10.77 -35.23 -0.38 -5.12 16 25 C 0.06 0.62 6.84 37.21 0.25 0.88 16 26 C -0.15 -1.45 5.42 -26.59 -0.14 -1.59 16 27 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 28 H 0.01 0.29 7.20 -51.93 -0.37 -0.09 16 29 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.05 1.01 6.64 -51.93 -0.34 0.66 16 32 H 0.03 0.45 8.06 -51.93 -0.42 0.03 16 33 H 0.07 1.10 6.25 -51.93 -0.32 0.77 16 34 H 0.04 0.47 8.06 -51.93 -0.42 0.05 16 35 H 0.09 1.28 6.35 -51.93 -0.33 0.95 16 36 H 0.13 1.50 8.06 -52.48 -0.42 1.07 16 37 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 38 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.12 1.09 7.73 -52.49 -0.41 0.69 16 41 H 0.08 0.89 5.14 -51.93 -0.27 0.62 16 42 H 0.03 0.34 8.05 -51.93 -0.42 -0.08 16 43 H 0.07 0.91 6.46 -51.93 -0.34 0.58 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.09 1.17 7.81 -51.93 -0.41 0.76 16 46 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 48 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 51 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 393.42 15.07 5.93 5.93 Total: -1.00 -30.86 393.42 -11.48 -42.33 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -9.09 Total: 0.10 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: -3.13 Total: -25.15 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: -0.14 Total: -35.18 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: -0.38 Total: -5.12 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.86 -11.48 -42.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111261599.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.802 kcal (2) G-P(sol) polarization free energy of solvation -30.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds