Wall clock time and date at job start Tue Mar 31 2020 11:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99862 * 2 1 4 4 H 1.48499 * 109.47203 * 269.99674 * 3 2 1 5 5 H 1.48498 * 109.47118 * 30.00247 * 3 2 1 6 6 H 1.48505 * 109.46785 * 150.00010 * 3 2 1 7 7 C 1.37879 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00101 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99884 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47126 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.47236 * 180.02562 * 10 9 7 12 12 N 1.46899 * 109.47024 * 181.28069 * 11 10 9 13 13 C 1.46894 * 111.00010 * 288.23531 * 12 11 10 14 14 C 1.50703 * 109.47163 * 170.00116 * 13 12 11 15 15 C 1.38228 * 120.00298 * 269.72739 * 14 13 12 16 16 C 1.38235 * 120.00371 * 179.76135 * 15 14 13 17 17 C 1.38241 * 119.99519 * 0.51617 * 16 15 14 18 18 C 1.38234 * 120.00130 * 359.73541 * 17 16 15 19 19 C 1.38236 * 119.99515 * 90.00157 * 14 13 12 20 20 C 1.46907 * 110.99751 * 164.28501 * 12 11 10 21 21 C 1.52996 * 109.46900 * 288.18653 * 20 12 11 22 22 C 1.53171 * 109.54613 * 296.66839 * 21 20 12 23 23 C 1.53097 * 109.16639 * 183.15398 * 22 21 20 24 24 O 1.42906 * 109.41224 * 57.60677 * 23 22 21 25 25 C 1.42901 * 114.09648 * 298.84146 * 24 23 22 26 26 C 1.53094 * 109.41377 * 61.16455 * 25 24 23 27 27 H 0.97001 * 119.99864 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.47024 * 60.00496 * 9 7 2 29 29 H 1.09002 * 109.47772 * 300.00771 * 9 7 2 30 30 H 1.08999 * 109.47036 * 60.00760 * 10 9 7 31 31 H 1.08998 * 109.47527 * 300.00462 * 10 9 7 32 32 H 1.08996 * 109.46706 * 61.27911 * 11 10 9 33 33 H 1.08995 * 109.46971 * 301.28371 * 11 10 9 34 34 H 1.08998 * 109.47857 * 290.00223 * 13 12 11 35 35 H 1.09002 * 109.47313 * 50.00303 * 13 12 11 36 36 H 1.08004 * 119.99602 * 0.02562 * 15 14 13 37 37 H 1.07997 * 120.00278 * 180.22892 * 16 15 14 38 38 H 1.07999 * 119.99681 * 179.72143 * 17 16 15 39 39 H 1.07996 * 119.99888 * 179.97438 * 18 17 16 40 40 H 1.07995 * 120.00614 * 0.02562 * 19 14 13 41 41 H 1.08997 * 109.46793 * 168.18591 * 20 12 11 42 42 H 1.08998 * 109.46970 * 48.18602 * 20 12 11 43 43 H 1.09001 * 109.61654 * 56.89236 * 21 20 12 44 44 H 1.08999 * 109.52167 * 303.05793 * 22 21 20 45 45 H 1.09003 * 109.52540 * 63.24522 * 22 21 20 46 46 H 1.08997 * 109.47607 * 297.62821 * 23 22 21 47 47 H 1.09002 * 109.47971 * 177.58990 * 23 22 21 48 48 H 1.08998 * 109.48249 * 301.17441 * 25 24 23 49 49 H 1.08998 * 109.48456 * 181.14444 * 25 24 23 50 50 H 1.09005 * 109.51816 * 182.48600 * 26 25 24 51 51 H 1.08994 * 109.52951 * 62.29257 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6365 0.0001 11 6 5.5516 -2.6366 0.0001 12 7 6.0412 -4.0212 -0.0307 13 6 5.8120 -4.6894 1.2572 14 6 6.0961 -6.1627 1.1163 15 6 5.0828 -7.0305 0.7547 16 6 5.3445 -8.3813 0.6207 17 6 6.6172 -8.8656 0.8587 18 6 7.6294 -7.9985 1.2255 19 6 7.3688 -6.6470 1.3543 20 6 7.4614 -4.0692 -0.4033 21 6 7.6108 -3.7312 -1.8880 22 6 6.8989 -4.7946 -2.7297 23 6 7.1203 -4.4918 -4.2141 24 8 8.5225 -4.4562 -4.4876 25 6 9.2327 -3.4491 -3.7641 26 6 9.0962 -3.7101 -2.2617 27 1 -0.4850 0.8401 -0.0004 28 1 3.8752 -0.6797 0.8895 29 1 3.8746 -0.6807 -0.8904 30 1 3.6579 -3.1505 -0.8897 31 1 3.6585 -3.1503 0.8902 32 1 5.9148 -2.1427 0.9013 33 1 5.9149 -2.1030 -0.8781 34 1 6.4735 -4.2624 2.0110 35 1 4.7750 -4.5468 1.5611 36 1 4.0875 -6.6526 0.5727 37 1 4.5536 -9.0588 0.3345 38 1 6.8206 -9.9215 0.7584 39 1 8.6235 -8.3770 1.4118 40 1 8.1594 -5.9697 1.6416 41 1 7.8522 -5.0696 -0.2172 42 1 8.0178 -3.3452 0.1919 43 1 7.1709 -2.7540 -2.0869 44 1 7.3055 -5.7781 -2.4941 45 1 5.8314 -4.7786 -2.5100 46 1 6.6778 -3.5260 -4.4579 47 1 6.6518 -5.2694 -4.8175 48 1 8.8178 -2.4697 -4.0021 49 1 10.2859 -3.4754 -4.0433 50 1 9.6001 -2.9184 -1.7073 51 1 9.5471 -4.6716 -2.0165 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111261599.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:50 Heat of formation + Delta-G solvation = -55.818451 kcal Electronic energy + Delta-G solvation = -27215.683867 eV Core-core repulsion = 23692.176772 eV Total energy + Delta-G solvation = -3523.507095 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.81611 -40.02642 -38.50500 -35.90345 -34.87371 -33.72517 -32.11324 -31.92310 -31.74774 -29.17627 -28.13261 -25.94013 -24.44643 -24.29289 -23.39519 -22.66123 -22.00940 -21.38625 -20.68028 -18.87886 -17.71290 -17.20650 -16.93446 -16.72954 -16.41123 -16.24406 -16.01622 -15.72584 -15.55534 -15.49350 -15.33606 -14.79532 -14.42178 -14.27198 -14.21592 -13.71686 -13.49175 -13.41957 -13.27837 -13.22447 -12.98242 -12.80628 -12.60005 -12.45597 -12.19902 -11.98967 -11.88257 -11.79616 -11.69286 -11.44537 -11.37912 -11.28507 -11.21802 -11.08676 -10.75784 -10.41317 -9.74814 -9.64808 -9.17029 -8.29073 -6.33101 0.47266 0.55527 1.35267 1.37197 1.49135 2.36161 2.75163 3.00604 3.06337 3.19009 3.72349 3.82326 3.91770 3.99105 4.01242 4.15574 4.16788 4.20392 4.31016 4.33301 4.36728 4.41036 4.45032 4.52327 4.61100 4.68682 4.71322 4.72563 4.77385 4.81943 4.85424 4.90090 4.92870 4.94716 5.00657 5.03320 5.12150 5.17338 5.20472 5.23015 5.34680 5.46630 5.54072 5.60626 5.62030 5.67035 5.67547 5.77698 6.10779 6.18693 6.22437 6.29925 6.31477 6.75314 7.31427 8.88058 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009364 B = 0.003873 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2989.493753 B = 7227.254081 C = 9238.437177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.002 3.998 3 Si 0.952 3.048 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.245 1.245 7 C -0.531 4.531 8 H 0.028 0.972 9 C -0.009 4.009 10 C -0.084 4.084 11 C 0.065 3.935 12 N -0.533 5.533 13 C 0.091 3.909 14 C -0.080 4.080 15 C -0.117 4.117 16 C -0.129 4.129 17 C -0.127 4.127 18 C -0.124 4.124 19 C -0.122 4.122 20 C 0.059 3.941 21 C -0.084 4.084 22 C -0.128 4.128 23 C 0.058 3.942 24 O -0.403 6.403 25 C 0.056 3.944 26 C -0.142 4.142 27 H 0.266 0.734 28 H 0.018 0.982 29 H 0.018 0.982 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.034 0.966 33 H 0.077 0.923 34 H 0.047 0.953 35 H 0.071 0.929 36 H 0.111 0.889 37 H 0.133 0.867 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.129 0.871 41 H 0.085 0.915 42 H 0.038 0.962 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.068 0.932 46 H 0.047 0.953 47 H 0.097 0.903 48 H 0.050 0.950 49 H 0.108 0.892 50 H 0.085 0.915 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.362 -13.735 -1.236 27.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.194 4.194 3 Si 0.775 3.225 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.169 1.169 7 C -0.569 4.569 8 H 0.046 0.954 9 C -0.047 4.047 10 C -0.122 4.122 11 C -0.062 4.062 12 N -0.257 5.257 13 C -0.036 4.036 14 C -0.080 4.080 15 C -0.136 4.136 16 C -0.146 4.146 17 C -0.145 4.145 18 C -0.142 4.142 19 C -0.140 4.140 20 C -0.068 4.068 21 C -0.103 4.103 22 C -0.166 4.166 23 C -0.019 4.019 24 O -0.322 6.322 25 C -0.020 4.020 26 C -0.181 4.181 27 H 0.075 0.925 28 H 0.036 0.964 29 H 0.037 0.963 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.095 0.905 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.129 0.871 37 H 0.151 0.849 38 H 0.159 0.841 39 H 0.160 0.840 40 H 0.147 0.853 41 H 0.103 0.897 42 H 0.057 0.943 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.087 0.913 46 H 0.065 0.935 47 H 0.115 0.885 48 H 0.068 0.932 49 H 0.126 0.874 50 H 0.104 0.896 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 23.042 -13.995 -1.711 27.013 hybrid contribution -0.512 1.410 0.831 1.714 sum 22.530 -12.585 -0.880 25.821 Atomic orbital electron populations 1.70082 1.08384 1.28127 1.52845 1.26054 0.95616 1.03613 0.94134 0.85628 0.79510 0.78080 0.79237 1.19102 1.21037 1.16860 1.21503 0.92291 0.92943 1.50177 0.95366 1.19483 0.93728 0.95123 0.96335 1.21242 0.93984 0.96508 1.00460 1.22105 0.94950 0.88510 1.00678 1.61923 1.18226 1.15845 1.29682 1.21057 1.01553 0.90661 0.90332 1.19755 0.94164 0.94539 0.99546 1.21153 0.99123 0.93987 0.99344 1.21380 0.97974 0.95194 1.00098 1.21439 0.92866 1.00831 0.99363 1.21401 1.00199 0.93078 0.99520 1.21204 0.95848 0.96311 1.00640 1.22252 0.87541 1.01853 0.95169 1.21179 0.95769 0.98878 0.94432 1.21940 1.01434 0.98713 0.94512 1.22664 0.81580 1.01529 0.96093 1.87877 1.20591 1.57002 1.66764 1.22714 0.97713 0.90678 0.90909 1.22161 0.95608 1.03365 0.96926 0.92546 0.96364 0.96350 0.93510 0.93823 0.94764 0.90478 0.93512 0.91009 0.87090 0.84948 0.84081 0.83955 0.85284 0.89691 0.94329 0.91905 0.92196 0.91323 0.93469 0.88521 0.93172 0.87350 0.89604 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.76 13.96 21.45 0.30 -60.47 16 2 C 0.00 0.13 5.47 84.65 0.46 0.59 16 3 Si 0.95 44.52 27.47 68.60 1.88 46.41 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.25 -10.54 6.54 99.48 0.65 -9.89 16 7 C -0.53 -31.21 9.66 25.60 0.25 -30.96 16 8 H 0.03 1.83 7.99 -2.91 -0.02 1.81 16 9 C -0.01 -0.41 4.04 29.85 0.12 -0.29 16 10 C -0.08 -3.29 5.18 30.60 0.16 -3.13 16 11 C 0.06 1.97 4.81 86.31 0.42 2.38 16 12 N -0.53 -13.95 3.86 -900.80 -3.48 -17.43 16 13 C 0.09 2.32 4.97 85.56 0.43 2.74 16 14 C -0.08 -1.86 4.93 -19.87 -0.10 -1.96 16 15 C -0.12 -2.86 9.70 22.27 0.22 -2.64 16 16 C -0.13 -2.62 10.05 22.27 0.22 -2.39 16 17 C -0.13 -2.20 10.05 22.27 0.22 -1.98 16 18 C -0.12 -2.10 10.05 22.27 0.22 -1.87 16 19 C -0.12 -2.35 7.85 22.27 0.17 -2.18 16 20 C 0.06 1.26 4.22 86.30 0.36 1.63 16 21 C -0.08 -1.75 2.27 -10.68 -0.02 -1.77 16 22 C -0.13 -2.94 5.25 30.68 0.16 -2.78 16 23 C 0.06 1.27 6.84 72.01 0.49 1.77 16 24 O -0.40 -9.23 10.77 -148.98 -1.60 -10.83 16 25 C 0.06 0.99 6.84 72.01 0.49 1.48 16 26 C -0.14 -2.37 5.42 30.69 0.17 -2.20 16 27 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 28 H 0.02 0.83 7.20 -2.39 -0.02 0.81 16 29 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 30 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.04 1.76 6.64 -2.39 -0.02 1.74 16 32 H 0.03 1.01 8.06 -2.39 -0.02 0.99 16 33 H 0.08 2.26 6.25 -2.39 -0.01 2.24 16 34 H 0.05 1.09 8.06 -2.39 -0.02 1.07 16 35 H 0.07 2.09 6.35 -2.39 -0.02 2.07 16 36 H 0.11 2.90 8.06 -2.91 -0.02 2.87 16 37 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 38 H 0.14 1.72 8.06 -2.91 -0.02 1.69 16 39 H 0.14 1.66 8.06 -2.91 -0.02 1.63 16 40 H 0.13 2.09 7.73 -2.91 -0.02 2.07 16 41 H 0.08 1.73 5.14 -2.39 -0.01 1.72 16 42 H 0.04 0.77 8.05 -2.39 -0.02 0.75 16 43 H 0.06 1.46 6.46 -2.39 -0.02 1.45 16 44 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.07 1.84 7.81 -2.39 -0.02 1.82 16 46 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 48 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 50 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 51 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -68.02 393.42 2.36 -65.66 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 0.81 Total: 20.23 kcal Atomic # 6 Polarization: -48.02 SS G_CDS: 4.45 Total: -43.57 kcal Atomic # 7 Polarization: -74.71 SS G_CDS: -3.18 Total: -77.89 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -1.60 Total: -10.83 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.88 Total: 46.41 kcal Total: -68.02 2.36 -65.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111261599.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.842 kcal (2) G-P(sol) polarization free energy of solvation -68.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds