Wall clock time and date at job start Tue Mar 31 2020 11:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.50289 * 2 1 4 4 C 1.53119 * 109.50175 * 120.08012 * 2 1 3 5 5 C 1.53117 * 109.16024 * 177.59519 * 4 2 1 6 6 C 1.53037 * 109.27796 * 302.34360 * 5 4 2 7 7 N 1.46852 * 109.52063 * 59.18200 * 6 5 4 8 8 C 1.46899 * 110.99562 * 174.16077 * 7 6 5 9 9 C 1.50690 * 109.47560 * 66.04171 * 8 7 6 10 10 C 1.38291 * 119.96943 * 89.99733 * 9 8 7 11 11 C 1.38251 * 120.11088 * 179.97438 * 10 9 8 12 12 C 1.38163 * 120.05527 * 0.28334 * 11 10 9 13 13 C 1.38717 * 119.94349 * 359.50941 * 12 11 10 14 14 O 1.35896 * 120.05449 * 180.21612 * 13 12 11 15 15 C 1.42901 * 117.00049 * 0.25021 * 14 13 12 16 16 C 1.52999 * 109.47017 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47260 * 179.97438 * 16 15 14 18 18 H 1.08005 * 120.00234 * 0.02562 * 17 16 15 19 19 C 1.37884 * 120.00190 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99888 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99762 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46689 * 90.00487 * 21 19 17 23 23 H 1.48502 * 109.46918 * 210.00183 * 21 19 17 24 24 H 1.48489 * 109.47476 * 330.00384 * 21 19 17 25 25 C 1.38121 * 119.97698 * 270.02288 * 9 8 7 26 26 C 1.46843 * 111.19516 * 298.25344 * 7 6 5 27 27 H 1.08993 * 109.47611 * 299.91960 * 1 2 3 28 28 H 1.09001 * 109.46880 * 59.92100 * 1 2 3 29 29 H 1.09007 * 109.47208 * 179.91880 * 1 2 3 30 30 H 1.09000 * 109.47484 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.47542 * 300.08153 * 3 2 1 32 32 H 1.09004 * 109.47428 * 60.07767 * 3 2 1 33 33 H 1.08999 * 109.52314 * 57.69146 * 4 2 1 34 34 H 1.08998 * 109.52231 * 297.50374 * 4 2 1 35 35 H 1.09000 * 109.50171 * 182.40345 * 5 4 2 36 36 H 1.08995 * 109.53425 * 62.30664 * 5 4 2 37 37 H 1.08993 * 109.46102 * 299.16617 * 6 5 4 38 38 H 1.09001 * 109.44737 * 179.19056 * 6 5 4 39 39 H 1.09000 * 109.46994 * 306.03994 * 8 7 6 40 40 H 1.09001 * 109.46895 * 186.04986 * 8 7 6 41 41 H 1.07998 * 119.94616 * 0.02562 * 10 9 8 42 42 H 1.08002 * 119.96904 * 179.97438 * 11 10 9 43 43 H 1.07998 * 120.03052 * 179.74049 * 12 11 10 44 44 H 1.09000 * 109.47106 * 299.99735 * 15 14 13 45 45 H 1.08994 * 109.47355 * 60.00674 * 15 14 13 46 46 H 1.08997 * 109.47639 * 300.00108 * 16 15 14 47 47 H 1.09000 * 109.47334 * 59.99968 * 16 15 14 48 48 H 0.96998 * 119.99752 * 179.97438 * 20 19 17 49 49 H 1.07997 * 120.02529 * 0.02562 * 25 9 8 50 50 H 1.09005 * 109.46156 * 181.75934 * 26 7 6 51 51 H 1.08999 * 109.46656 * 301.72892 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0408 1.4421 0.0000 4 6 2.0412 -0.7234 1.2490 5 6 3.5711 -0.7716 1.2110 6 6 4.0229 -1.4731 -0.0719 7 7 3.5093 -0.7425 -1.2376 8 6 4.0373 -1.3067 -2.4869 9 6 3.5012 -2.7026 -2.6738 10 6 2.3149 -2.9014 -3.3562 11 6 1.8207 -4.1809 -3.5298 12 6 2.5082 -5.2638 -3.0166 13 6 3.7006 -5.0674 -2.3355 14 8 4.3810 -6.1313 -1.8337 15 6 3.8130 -7.4248 -2.0491 16 6 4.7127 -8.4886 -1.4167 17 6 4.1135 -9.8526 -1.6432 18 1 3.1840 -9.9510 -2.1845 19 6 4.7522 -10.9751 -1.1604 20 7 5.8842 -10.8554 -0.5017 21 14 4.0097 -12.6659 -1.4419 22 1 4.5238 -13.2261 -2.7176 23 1 4.3843 -13.5641 -0.3202 24 1 2.5308 -12.5517 -1.5118 25 6 4.1947 -3.7824 -2.1631 26 6 2.0410 -0.7239 -1.2478 27 1 -0.3634 0.5125 0.8906 28 1 -0.3633 0.5151 -0.8893 29 1 -0.3634 -1.0277 -0.0015 30 1 3.1308 1.4416 -0.0005 31 1 1.6766 1.9566 -0.8892 32 1 1.6789 1.9558 0.8907 33 1 1.6452 -1.7387 1.2695 34 1 1.7156 -0.1864 2.1398 35 1 3.9394 -1.3228 2.0762 36 1 3.9683 0.2433 1.2301 37 1 3.6374 -2.4925 -0.0834 38 1 5.1121 -1.4961 -0.1087 39 1 5.1258 -1.3389 -2.4396 40 1 3.7284 -0.6834 -3.3261 41 1 1.7740 -2.0559 -3.7548 42 1 0.8937 -4.3335 -4.0627 43 1 2.1196 -6.2627 -3.1489 44 1 2.8241 -7.4679 -1.5927 45 1 3.7277 -7.6105 -3.1197 46 1 5.7018 -8.4456 -1.8725 47 1 4.7978 -8.3028 -0.3460 48 1 6.3333 -11.6450 -0.1618 49 1 5.1207 -3.6265 -1.6296 50 1 1.6905 -0.2029 -2.1389 51 1 1.6648 -1.7469 -1.2538 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121132764.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:45 Heat of formation + Delta-G solvation = -38.561667 kcal Electronic energy + Delta-G solvation = -26903.236283 eV Core-core repulsion = 23380.477498 eV Total energy + Delta-G solvation = -3522.758785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.45803 -39.37807 -37.38961 -35.12989 -33.40954 -32.48850 -31.06647 -30.47171 -29.17685 -27.41909 -26.95842 -26.46233 -25.02158 -23.37731 -22.24846 -22.00651 -21.17160 -20.15490 -18.60643 -17.59674 -16.27995 -15.94933 -15.75738 -15.64378 -15.35403 -15.16341 -14.98373 -14.70477 -14.52108 -14.17941 -13.93433 -13.59678 -13.16908 -12.99459 -12.68447 -12.56065 -12.41349 -12.34391 -12.11838 -12.08689 -11.59649 -11.51382 -11.50770 -11.39735 -11.20066 -11.10801 -10.89167 -10.78844 -10.66540 -10.51029 -10.41117 -10.32493 -9.89179 -9.69043 -9.33312 -8.78164 -8.47771 -8.40891 -7.88084 -6.13019 -4.17830 1.39320 1.62645 3.25351 3.31315 3.34079 3.72103 3.78576 4.00750 4.38320 4.45482 4.61781 4.65001 4.84254 4.88387 4.98898 5.13423 5.18928 5.23419 5.24013 5.24909 5.32693 5.40806 5.44094 5.47930 5.57161 5.59662 5.65830 5.67075 5.72461 5.74339 5.78874 5.81656 5.88798 5.91593 5.99320 6.00904 6.02467 6.07942 6.13104 6.17522 6.35705 6.48866 6.52077 6.61289 6.68873 6.92061 6.93727 6.98881 7.47264 7.60558 7.78139 8.02329 8.20779 8.87649 9.46608 10.98581 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.020067 B = 0.002471 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.013693 B =11328.735518 C =11635.666783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.063 4.063 3 C -0.132 4.132 4 C -0.111 4.111 5 C -0.118 4.118 6 C 0.048 3.952 7 N -0.523 5.523 8 C 0.095 3.905 9 C -0.088 4.088 10 C -0.160 4.160 11 C -0.080 4.080 12 C -0.211 4.211 13 C 0.146 3.854 14 O -0.316 6.316 15 C 0.066 3.934 16 C 0.026 3.974 17 C -0.527 4.527 18 H 0.058 0.942 19 C 0.061 3.939 20 N -0.889 5.889 21 Si 0.899 3.101 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.273 1.273 25 C -0.151 4.151 26 C 0.063 3.937 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.044 0.956 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.044 0.956 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.116 0.884 42 H 0.119 0.881 43 H 0.129 0.871 44 H 0.050 0.950 45 H 0.050 0.950 46 H 0.028 0.972 47 H 0.027 0.973 48 H 0.264 0.736 49 H 0.125 0.875 50 H 0.070 0.930 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.470 24.602 -1.177 26.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.063 4.063 3 C -0.189 4.189 4 C -0.149 4.149 5 C -0.155 4.155 6 C -0.080 4.080 7 N -0.245 5.245 8 C -0.033 4.033 9 C -0.090 4.090 10 C -0.179 4.179 11 C -0.099 4.099 12 C -0.231 4.231 13 C 0.099 3.901 14 O -0.229 6.229 15 C -0.008 4.008 16 C -0.011 4.011 17 C -0.565 4.565 18 H 0.076 0.924 19 C -0.142 4.142 20 N -0.527 5.527 21 Si 0.726 3.274 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.198 1.198 25 C -0.170 4.170 26 C -0.065 4.065 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.062 0.938 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.134 0.866 42 H 0.137 0.863 43 H 0.147 0.853 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.046 0.954 47 H 0.046 0.954 48 H 0.073 0.927 49 H 0.143 0.857 50 H 0.089 0.911 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -7.969 24.981 -0.917 26.237 hybrid contribution -0.892 -2.129 -0.346 2.334 sum -8.861 22.852 -1.263 24.542 Atomic orbital electron populations 1.21844 0.94650 1.01755 1.01680 1.20584 0.94746 0.96178 0.94817 1.21781 1.02338 0.94257 1.00524 1.21651 0.95795 1.00269 0.97169 1.21619 0.95713 1.01410 0.96796 1.22184 0.99860 0.96029 0.89947 1.62359 1.08290 1.52072 1.01741 1.21224 1.00050 0.89380 0.92641 1.20314 0.95314 0.95953 0.97394 1.20797 0.97225 0.96761 1.03161 1.20885 0.98906 0.92212 0.97862 1.21393 0.96964 1.00358 1.04339 1.19207 0.90605 0.88449 0.91886 1.86175 1.49136 1.14958 1.72618 1.23329 0.98469 0.78930 1.00106 1.19119 0.94974 0.90196 0.96847 1.20965 1.08350 0.90541 1.36675 0.92393 1.24993 0.94870 0.99461 0.94851 1.69974 1.16330 1.29883 1.36543 0.86484 0.79469 0.83504 0.77922 1.20460 1.21004 1.19767 1.20309 1.01972 0.89479 1.05279 1.22185 0.87434 0.99315 0.97561 0.92564 0.92667 0.92747 0.91160 0.93264 0.93658 0.92219 0.91998 0.91622 0.91032 0.93784 0.90802 0.89771 0.89818 0.86646 0.86270 0.85311 0.93206 0.93148 0.95403 0.95421 0.92670 0.85676 0.91135 0.93842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 8.48 37.16 0.32 -0.78 16 2 C -0.06 -0.54 0.77 -154.43 -0.12 -0.66 16 3 C -0.13 -1.05 8.04 37.15 0.30 -0.76 16 4 C -0.11 -1.01 4.79 -26.61 -0.13 -1.14 16 5 C -0.12 -1.09 5.74 -26.65 -0.15 -1.24 16 6 C 0.05 0.50 4.82 -3.83 -0.02 0.48 16 7 N -0.52 -5.18 4.14 -236.12 -0.98 -6.15 16 8 C 0.09 0.94 5.55 -4.98 -0.03 0.92 16 9 C -0.09 -1.08 4.04 -104.65 -0.42 -1.50 16 10 C -0.16 -1.91 8.01 -39.56 -0.32 -2.23 16 11 C -0.08 -1.05 10.04 -39.60 -0.40 -1.44 16 12 C -0.21 -3.31 9.04 -39.43 -0.36 -3.67 16 13 C 0.15 2.53 6.69 -39.21 -0.26 2.27 16 14 O -0.32 -6.53 10.14 -19.41 -0.20 -6.73 16 15 C 0.07 1.42 4.68 37.16 0.17 1.59 16 16 C 0.03 0.68 5.34 -27.88 -0.15 0.53 16 17 C -0.53 -14.72 9.11 -34.44 -0.31 -15.03 16 18 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 21 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 25 C -0.15 -2.25 8.05 -39.43 -0.32 -2.56 16 26 C 0.06 0.60 3.26 -3.84 -0.01 0.59 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.62 6.01 -51.93 -0.31 0.31 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.63 6.59 -51.93 -0.34 0.29 16 37 H 0.04 0.56 6.55 -51.93 -0.34 0.22 16 38 H 0.07 0.75 8.06 -51.93 -0.42 0.33 16 39 H 0.08 0.81 8.00 -51.93 -0.42 0.39 16 40 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 41 H 0.12 1.13 8.02 -52.49 -0.42 0.71 16 42 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 43 H 0.13 2.01 6.30 -52.49 -0.33 1.68 16 44 H 0.05 1.03 7.65 -51.93 -0.40 0.63 16 45 H 0.05 1.04 7.67 -51.93 -0.40 0.64 16 46 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 49 H 0.13 1.80 8.03 -52.49 -0.42 1.37 16 50 H 0.07 0.64 8.12 -51.93 -0.42 0.21 16 51 H 0.04 0.50 6.46 -51.93 -0.34 0.16 16 LS Contribution 391.43 15.07 5.90 5.90 Total: -1.00 -29.46 391.43 -11.03 -40.49 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -9.17 Total: -1.00 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: -2.30 Total: -23.01 kcal Atomic # 7 Polarization: -31.65 SS G_CDS: -0.24 Total: -31.89 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -0.20 Total: -6.73 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.46 -11.03 -40.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121132764.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.933 kcal (2) G-P(sol) polarization free energy of solvation -29.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds