Wall clock time and date at job start Tue Mar 31 2020 11:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38261 * 119.99870 * 2 1 4 4 C 1.38213 * 119.99840 * 180.23059 * 3 2 1 5 5 C 1.38255 * 120.00354 * 359.81560 * 4 3 2 6 6 C 1.38221 * 119.99500 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.99599 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.46993 * 179.97438 * 7 6 5 9 9 C 1.53006 * 109.46979 * 299.97487 * 7 6 5 10 10 C 1.50688 * 109.47381 * 59.97529 * 7 6 5 11 11 O 1.21287 * 120.00293 * 335.47899 * 10 7 6 12 12 N 1.34780 * 120.00233 * 155.47667 * 10 7 6 13 13 C 1.46507 * 119.99741 * 6.32194 * 12 10 7 14 14 C 1.50703 * 109.46639 * 92.96720 * 13 12 10 15 15 H 1.07994 * 120.00086 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99565 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00015 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99909 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.47085 * 90.00266 * 18 16 14 20 20 H 1.48498 * 109.46851 * 210.00016 * 18 16 14 21 21 H 1.48497 * 109.47294 * 330.00194 * 18 16 14 22 22 C 1.46496 * 120.00372 * 186.32370 * 12 10 7 23 23 C 1.53003 * 109.47220 * 90.30610 * 22 12 10 24 24 C 1.53000 * 109.46845 * 174.57015 * 23 22 12 25 25 C 1.53005 * 109.47184 * 65.00420 * 24 23 22 26 26 C 1.53004 * 109.46873 * 185.00150 * 24 23 22 27 27 C 1.38209 * 120.00358 * 179.81420 * 2 1 3 28 28 H 1.08999 * 109.47320 * 270.18887 * 1 2 3 29 29 H 1.08997 * 109.47373 * 30.18861 * 1 2 3 30 30 H 1.08995 * 109.47027 * 150.18883 * 1 2 3 31 31 H 1.08003 * 119.99981 * 0.02585 * 3 2 1 32 32 H 1.08006 * 119.99944 * 179.78679 * 4 3 2 33 33 H 1.07997 * 120.00729 * 179.97438 * 5 4 3 34 34 H 1.09003 * 109.46971 * 174.01377 * 9 7 6 35 35 H 1.09002 * 109.46986 * 294.00913 * 9 7 6 36 36 H 1.08997 * 109.46837 * 54.01221 * 9 7 6 37 37 H 1.08992 * 109.46849 * 212.96746 * 13 12 10 38 38 H 1.08999 * 109.47067 * 332.96805 * 13 12 10 39 39 H 0.96994 * 119.99944 * 179.97438 * 17 16 14 40 40 H 1.09005 * 109.47205 * 210.30879 * 22 12 10 41 41 H 1.09001 * 109.47225 * 330.31035 * 22 12 10 42 42 H 1.08999 * 109.47143 * 294.57146 * 23 22 12 43 43 H 1.09002 * 109.46868 * 54.57262 * 23 22 12 44 44 H 1.08994 * 109.47339 * 304.99744 * 24 23 22 45 45 H 1.09000 * 109.46889 * 59.99666 * 25 24 23 46 46 H 1.08994 * 109.47051 * 179.97438 * 25 24 23 47 47 H 1.08994 * 109.46570 * 299.99698 * 25 24 23 48 48 H 1.09000 * 109.47489 * 60.00002 * 26 24 23 49 49 H 1.09002 * 109.47252 * 180.02562 * 26 24 23 50 50 H 1.09002 * 109.46826 * 300.00236 * 26 24 23 51 51 H 1.08004 * 119.99710 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 -0.0048 5 6 4.2717 0.0001 -0.0058 6 6 3.5806 -1.1969 -0.0014 7 6 4.3341 -2.5020 -0.0030 8 1 3.6258 -3.3305 0.0014 9 6 5.2080 -2.5848 -1.2563 10 6 5.2062 -2.5801 1.2234 11 8 5.5718 -1.5628 1.7734 12 7 5.5799 -3.7804 1.7093 13 6 5.2561 -5.0030 0.9698 14 6 6.4075 -5.3636 0.0668 15 1 7.2916 -4.7439 0.0455 16 6 6.3315 -6.4842 -0.7330 17 7 7.3364 -6.7992 -1.5208 18 14 4.8018 -7.5557 -0.6966 19 1 3.8329 -7.0700 -1.7118 20 1 5.1743 -8.9607 -1.0003 21 1 4.1820 -7.4881 0.6512 22 6 6.3098 -3.8626 2.9768 23 6 5.3144 -3.9994 4.1307 24 6 6.0770 -4.2209 5.4384 25 6 6.9047 -2.9759 5.7634 26 6 5.0819 -4.4817 6.5711 27 6 2.1981 -1.1969 0.0039 28 1 -0.3634 0.0034 1.0276 29 1 -0.3634 0.8882 -0.5167 30 1 -0.3633 -0.8916 -0.5109 31 1 1.6582 2.1327 0.0004 32 1 4.1204 2.1328 -0.0083 33 1 5.3517 0.0000 -0.0100 34 1 5.8318 -3.4772 -1.2059 35 1 4.5719 -2.6355 -2.1400 36 1 5.8427 -1.7006 -1.3156 37 1 5.0774 -5.8163 1.6731 38 1 4.3613 -4.8384 0.3696 39 1 7.2831 -7.5877 -2.0831 40 1 6.9691 -4.7306 2.9608 41 1 6.9029 -2.9584 3.1139 42 1 4.7192 -3.0894 4.2068 43 1 4.6572 -4.8489 3.9448 44 1 6.7393 -5.0800 5.3318 45 1 6.2423 -2.1169 5.8701 46 1 7.4476 -3.1336 6.6953 47 1 7.6135 -2.7901 4.9565 48 1 4.4921 -5.3687 6.3396 49 1 5.6251 -4.6392 7.5029 50 1 4.4195 -3.6227 6.6777 51 1 1.6581 -2.1322 0.0073 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121244945.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:02 Heat of formation + Delta-G solvation = -41.498719 kcal Electronic energy + Delta-G solvation = -27565.610380 eV Core-core repulsion = 24042.724235 eV Total energy + Delta-G solvation = -3522.886145 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.99140 -38.64726 -36.63299 -34.86043 -33.99545 -32.53297 -32.06080 -29.86366 -28.89553 -27.53081 -27.04441 -26.65257 -24.45142 -22.99406 -22.58045 -21.81276 -20.42279 -19.77522 -17.96493 -17.05602 -16.60297 -16.20063 -15.64802 -15.18041 -14.81110 -14.55259 -14.51383 -14.08965 -13.72082 -13.62060 -13.39502 -13.18449 -12.99787 -12.79690 -12.70983 -12.49124 -12.22074 -12.15958 -12.01999 -11.93713 -11.62696 -11.52306 -11.37231 -11.14745 -11.05197 -10.98564 -10.80158 -10.72619 -10.60203 -10.47824 -10.40224 -10.24428 -10.14682 -9.61844 -9.01274 -8.74245 -8.48673 -8.29123 -7.72249 -6.24824 -4.25327 1.60535 1.66014 3.14771 3.22921 3.24764 3.35076 3.76244 4.10055 4.23714 4.89586 4.97364 5.01343 5.04720 5.09197 5.10167 5.13250 5.29740 5.39481 5.40486 5.56379 5.59324 5.65548 5.69637 5.76698 5.79496 5.82658 5.85426 5.86498 5.89073 5.94665 5.98106 6.07480 6.21663 6.27012 6.28447 6.32649 6.35250 6.40011 6.45078 6.50436 6.58592 6.61492 6.69074 6.74122 6.77284 6.97278 7.07595 7.28006 7.35908 7.42791 8.12334 8.40314 8.79771 8.93980 9.34646 10.87389 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.007873 B = 0.005264 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3555.519611 B = 5317.952449 C = 7516.740665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.098 4.098 3 C -0.128 4.128 4 C -0.124 4.124 5 C -0.081 4.081 6 C -0.059 4.059 7 C -0.068 4.068 8 H 0.096 0.904 9 C -0.149 4.149 10 C 0.527 3.473 11 O -0.562 6.562 12 N -0.590 5.590 13 C 0.205 3.795 14 C -0.537 4.537 15 H 0.080 0.920 16 C 0.078 3.922 17 N -0.888 5.888 18 Si 0.867 3.133 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.264 1.264 22 C 0.119 3.881 23 C -0.128 4.128 24 C -0.094 4.094 25 C -0.147 4.147 26 C -0.145 4.145 27 C -0.116 4.116 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.114 0.886 32 H 0.117 0.883 33 H 0.125 0.875 34 H 0.106 0.894 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.032 0.968 38 H 0.032 0.968 39 H 0.267 0.733 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.071 0.929 45 H 0.052 0.948 46 H 0.049 0.951 47 H 0.059 0.941 48 H 0.052 0.948 49 H 0.051 0.949 50 H 0.051 0.949 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.495 8.840 6.949 14.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.098 4.098 3 C -0.146 4.146 4 C -0.142 4.142 5 C -0.099 4.099 6 C -0.059 4.059 7 C -0.089 4.089 8 H 0.114 0.886 9 C -0.206 4.206 10 C 0.315 3.685 11 O -0.442 6.442 12 N -0.319 5.319 13 C 0.084 3.916 14 C -0.575 4.575 15 H 0.098 0.902 16 C -0.126 4.126 17 N -0.526 5.526 18 Si 0.693 3.307 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.189 1.189 22 C -0.004 4.004 23 C -0.167 4.167 24 C -0.113 4.113 25 C -0.204 4.204 26 C -0.202 4.202 27 C -0.135 4.135 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.143 0.857 34 H 0.125 0.875 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.078 0.922 48 H 0.071 0.929 49 H 0.070 0.930 50 H 0.070 0.930 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.229 9.195 7.094 14.834 hybrid contribution -0.732 -0.859 -0.136 1.137 sum -9.962 8.336 6.958 14.736 Atomic orbital electron populations 1.20735 0.91615 1.02364 1.01948 1.19764 0.95647 0.93152 1.01193 1.20918 0.94287 0.97065 1.02290 1.21087 0.94139 0.97922 1.01064 1.21047 1.00405 0.91437 0.97058 1.19595 0.93084 0.94443 0.98810 1.20235 0.97573 0.95467 0.95625 0.88625 1.21958 0.99711 1.04966 0.93992 1.20231 0.80492 0.83129 0.84680 1.90592 1.57445 1.34687 1.61427 1.47867 1.55174 1.07079 1.21806 1.19871 0.97098 0.82449 0.92185 1.21320 1.02766 1.10950 1.22468 0.90187 1.24856 0.95988 0.96953 0.94757 1.69883 1.30893 1.26544 1.25254 0.86987 0.83860 0.80582 0.79228 1.19761 1.20884 1.18878 1.21365 0.94012 1.02874 0.82154 1.22009 0.98789 1.01849 0.94019 1.21059 0.97096 0.98562 0.94592 1.21870 0.99933 0.97581 1.01057 1.21824 0.99080 1.01368 0.97924 1.20902 0.93433 0.97472 1.01645 0.91579 0.91909 0.91761 0.86746 0.86489 0.85668 0.87538 0.92480 0.92938 0.95036 0.95057 0.92328 0.90379 0.90523 0.92102 0.92016 0.91056 0.92846 0.93228 0.92200 0.92850 0.92998 0.92951 0.86424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.01 36.00 0.36 -0.75 16 2 C -0.10 -1.30 5.88 -104.63 -0.62 -1.92 16 3 C -0.13 -1.67 9.70 -39.58 -0.38 -2.06 16 4 C -0.12 -1.77 10.05 -39.58 -0.40 -2.17 16 5 C -0.08 -1.35 7.82 -39.58 -0.31 -1.66 16 6 C -0.06 -0.99 4.64 -104.62 -0.49 -1.48 16 7 C -0.07 -1.23 2.12 -92.92 -0.20 -1.43 16 8 H 0.10 1.67 6.01 -51.93 -0.31 1.36 16 9 C -0.15 -2.75 9.02 37.16 0.34 -2.41 16 10 C 0.53 10.68 6.76 -10.99 -0.07 10.61 16 11 O -0.56 -12.28 14.10 5.55 0.08 -12.20 16 12 N -0.59 -11.89 2.46 -175.06 -0.43 -12.32 16 13 C 0.21 4.41 3.94 -5.19 -0.02 4.39 16 14 C -0.54 -13.55 7.74 -34.44 -0.27 -13.81 16 15 H 0.08 2.28 8.06 -52.49 -0.42 1.85 16 16 C 0.08 2.04 5.47 -17.82 -0.10 1.95 16 17 N -0.89 -25.08 13.96 55.43 0.77 -24.30 16 18 Si 0.87 19.32 27.47 -169.99 -4.67 14.65 16 19 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.26 -5.59 6.54 56.52 0.37 -5.22 16 22 C 0.12 2.15 5.09 -4.04 -0.02 2.13 16 23 C -0.13 -1.97 5.01 -26.73 -0.13 -2.10 16 24 C -0.09 -1.21 2.92 -90.62 -0.26 -1.47 16 25 C -0.15 -1.82 8.95 37.16 0.33 -1.49 16 26 C -0.14 -1.62 9.19 37.16 0.34 -1.27 16 27 C -0.12 -1.75 9.33 -39.59 -0.37 -2.12 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 30 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 31 H 0.11 1.21 8.06 -52.48 -0.42 0.78 16 32 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 33 H 0.13 2.19 6.87 -52.49 -0.36 1.83 16 34 H 0.11 2.29 5.47 -51.93 -0.28 2.00 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.05 0.93 7.20 -51.93 -0.37 0.56 16 37 H 0.03 0.68 7.15 -51.93 -0.37 0.30 16 38 H 0.03 0.65 5.15 -51.93 -0.27 0.38 16 39 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.08 1.43 8.07 -51.93 -0.42 1.01 16 41 H 0.08 1.43 6.03 -51.93 -0.31 1.11 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.79 6.69 -51.93 -0.35 0.44 16 48 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 51 H 0.12 1.59 7.95 -52.48 -0.42 1.17 16 LS Contribution 399.03 15.07 6.01 6.01 Total: -1.00 -28.60 399.03 -9.47 -38.07 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -8.97 Total: 7.16 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -2.27 Total: -17.07 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.34 Total: -36.62 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.08 Total: -12.20 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.67 Total: 14.65 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -28.60 -9.47 -38.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121244945.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.433 kcal (2) G-P(sol) polarization free energy of solvation -28.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds