Wall clock time and date at job start Tue Mar 31 2020 11:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38261 * 119.99870 * 2 1 4 4 C 1.38213 * 119.99840 * 180.23059 * 3 2 1 5 5 C 1.38255 * 120.00354 * 359.81560 * 4 3 2 6 6 C 1.38221 * 119.99500 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.99599 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.46993 * 179.97438 * 7 6 5 9 9 C 1.53006 * 109.46979 * 299.97487 * 7 6 5 10 10 C 1.50688 * 109.47381 * 59.97529 * 7 6 5 11 11 O 1.21287 * 120.00293 * 335.47899 * 10 7 6 12 12 N 1.34780 * 120.00233 * 155.47667 * 10 7 6 13 13 C 1.46507 * 119.99741 * 6.32194 * 12 10 7 14 14 C 1.50703 * 109.46639 * 92.96720 * 13 12 10 15 15 H 1.07994 * 120.00086 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99565 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00015 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99909 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.47085 * 90.00266 * 18 16 14 20 20 H 1.48498 * 109.46851 * 210.00016 * 18 16 14 21 21 H 1.48497 * 109.47294 * 330.00194 * 18 16 14 22 22 C 1.46496 * 120.00372 * 186.32370 * 12 10 7 23 23 C 1.53003 * 109.47220 * 90.30610 * 22 12 10 24 24 C 1.53000 * 109.46845 * 174.57015 * 23 22 12 25 25 C 1.53005 * 109.47184 * 65.00420 * 24 23 22 26 26 C 1.53004 * 109.46873 * 185.00150 * 24 23 22 27 27 C 1.38209 * 120.00358 * 179.81420 * 2 1 3 28 28 H 1.08999 * 109.47320 * 270.18887 * 1 2 3 29 29 H 1.08997 * 109.47373 * 30.18861 * 1 2 3 30 30 H 1.08995 * 109.47027 * 150.18883 * 1 2 3 31 31 H 1.08003 * 119.99981 * 0.02585 * 3 2 1 32 32 H 1.08006 * 119.99944 * 179.78679 * 4 3 2 33 33 H 1.07997 * 120.00729 * 179.97438 * 5 4 3 34 34 H 1.09003 * 109.46971 * 174.01377 * 9 7 6 35 35 H 1.09002 * 109.46986 * 294.00913 * 9 7 6 36 36 H 1.08997 * 109.46837 * 54.01221 * 9 7 6 37 37 H 1.08992 * 109.46849 * 212.96746 * 13 12 10 38 38 H 1.08999 * 109.47067 * 332.96805 * 13 12 10 39 39 H 0.96994 * 119.99944 * 179.97438 * 17 16 14 40 40 H 1.09005 * 109.47205 * 210.30879 * 22 12 10 41 41 H 1.09001 * 109.47225 * 330.31035 * 22 12 10 42 42 H 1.08999 * 109.47143 * 294.57146 * 23 22 12 43 43 H 1.09002 * 109.46868 * 54.57262 * 23 22 12 44 44 H 1.08994 * 109.47339 * 304.99744 * 24 23 22 45 45 H 1.09000 * 109.46889 * 59.99666 * 25 24 23 46 46 H 1.08994 * 109.47051 * 179.97438 * 25 24 23 47 47 H 1.08994 * 109.46570 * 299.99698 * 25 24 23 48 48 H 1.09000 * 109.47489 * 60.00002 * 26 24 23 49 49 H 1.09002 * 109.47252 * 180.02562 * 26 24 23 50 50 H 1.09002 * 109.46826 * 300.00236 * 26 24 23 51 51 H 1.08004 * 119.99710 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 -0.0048 5 6 4.2717 0.0001 -0.0058 6 6 3.5806 -1.1969 -0.0014 7 6 4.3341 -2.5020 -0.0030 8 1 3.6258 -3.3305 0.0014 9 6 5.2080 -2.5848 -1.2563 10 6 5.2062 -2.5801 1.2234 11 8 5.5718 -1.5628 1.7734 12 7 5.5799 -3.7804 1.7093 13 6 5.2561 -5.0030 0.9698 14 6 6.4075 -5.3636 0.0668 15 1 7.2916 -4.7439 0.0455 16 6 6.3315 -6.4842 -0.7330 17 7 7.3364 -6.7992 -1.5208 18 14 4.8018 -7.5557 -0.6966 19 1 3.8329 -7.0700 -1.7118 20 1 5.1743 -8.9607 -1.0003 21 1 4.1820 -7.4881 0.6512 22 6 6.3098 -3.8626 2.9768 23 6 5.3144 -3.9994 4.1307 24 6 6.0770 -4.2209 5.4384 25 6 6.9047 -2.9759 5.7634 26 6 5.0819 -4.4817 6.5711 27 6 2.1981 -1.1969 0.0039 28 1 -0.3634 0.0034 1.0276 29 1 -0.3634 0.8882 -0.5167 30 1 -0.3633 -0.8916 -0.5109 31 1 1.6582 2.1327 0.0004 32 1 4.1204 2.1328 -0.0083 33 1 5.3517 0.0000 -0.0100 34 1 5.8318 -3.4772 -1.2059 35 1 4.5719 -2.6355 -2.1400 36 1 5.8427 -1.7006 -1.3156 37 1 5.0774 -5.8163 1.6731 38 1 4.3613 -4.8384 0.3696 39 1 7.2831 -7.5877 -2.0831 40 1 6.9691 -4.7306 2.9608 41 1 6.9029 -2.9584 3.1139 42 1 4.7192 -3.0894 4.2068 43 1 4.6572 -4.8489 3.9448 44 1 6.7393 -5.0800 5.3318 45 1 6.2423 -2.1169 5.8701 46 1 7.4476 -3.1336 6.6953 47 1 7.6135 -2.7901 4.9565 48 1 4.4921 -5.3687 6.3396 49 1 5.6251 -4.6392 7.5029 50 1 4.4195 -3.6227 6.6777 51 1 1.6581 -2.1322 0.0073 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121244945.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:01 Heat of formation + Delta-G solvation = -53.933508 kcal Electronic energy + Delta-G solvation = -27566.149592 eV Core-core repulsion = 24042.724235 eV Total energy + Delta-G solvation = -3523.425358 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.44098 -39.91833 -37.88338 -36.47787 -35.28951 -34.47622 -33.12614 -31.20872 -30.31265 -29.21497 -28.02261 -27.61403 -25.88139 -24.57166 -24.17602 -22.93698 -21.67026 -20.90533 -19.55672 -18.98311 -18.13582 -17.47402 -17.08998 -16.50757 -16.12100 -15.98360 -15.78297 -15.59612 -14.94952 -14.73746 -14.61641 -14.51616 -14.32736 -14.27326 -13.97959 -13.88046 -13.57681 -13.34324 -13.19200 -13.06911 -12.97133 -12.76943 -12.69578 -12.62156 -12.53332 -12.35636 -12.23548 -12.05860 -11.84505 -11.78478 -11.67260 -11.59374 -11.56256 -11.44079 -10.76343 -10.55363 -9.66284 -9.43953 -9.37180 -8.27650 -6.33089 0.46137 0.54375 1.40388 1.42209 1.50914 1.72742 2.26236 2.35569 2.91255 3.05727 3.67403 3.69420 3.90288 3.95909 4.00644 4.05940 4.08147 4.22627 4.28571 4.33595 4.37377 4.53296 4.57345 4.61998 4.67357 4.70080 4.75994 4.78265 4.81850 4.85598 4.88790 4.90758 4.94982 4.97044 5.01348 5.04461 5.10543 5.12902 5.19959 5.30387 5.34266 5.41964 5.44727 5.47016 5.49008 5.62678 5.70428 5.73665 5.80641 6.17340 6.20980 6.62509 6.71474 7.24921 7.36026 8.88307 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.007873 B = 0.005264 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3555.519611 B = 5317.952449 C = 7516.740665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.096 4.096 3 C -0.125 4.125 4 C -0.128 4.128 5 C -0.106 4.106 6 C -0.079 4.079 7 C -0.062 4.062 8 H 0.105 0.895 9 C -0.140 4.140 10 C 0.520 3.480 11 O -0.582 6.582 12 N -0.596 5.596 13 C 0.214 3.786 14 C -0.529 4.529 15 H 0.031 0.969 16 C 0.024 3.976 17 N -0.940 5.940 18 Si 0.932 3.068 19 H -0.260 1.260 20 H -0.287 1.287 21 H -0.239 1.239 22 C 0.117 3.883 23 C -0.115 4.115 24 C -0.093 4.093 25 C -0.145 4.145 26 C -0.140 4.140 27 C -0.127 4.127 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.147 0.853 32 H 0.136 0.864 33 H 0.102 0.898 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.047 0.953 37 H 0.043 0.957 38 H 0.048 0.952 39 H 0.268 0.732 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.049 0.951 43 H 0.064 0.936 44 H 0.073 0.927 45 H 0.048 0.952 46 H 0.069 0.931 47 H 0.043 0.957 48 H 0.056 0.944 49 H 0.068 0.932 50 H 0.052 0.948 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.112 9.141 8.112 17.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.096 4.096 3 C -0.143 4.143 4 C -0.146 4.146 5 C -0.124 4.124 6 C -0.079 4.079 7 C -0.083 4.083 8 H 0.122 0.878 9 C -0.197 4.197 10 C 0.309 3.691 11 O -0.463 6.463 12 N -0.325 5.325 13 C 0.092 3.908 14 C -0.568 4.568 15 H 0.049 0.951 16 C -0.175 4.175 17 N -0.580 5.580 18 Si 0.755 3.245 19 H -0.185 1.185 20 H -0.213 1.213 21 H -0.162 1.162 22 C -0.006 4.006 23 C -0.154 4.154 24 C -0.112 4.112 25 C -0.202 4.202 26 C -0.197 4.197 27 C -0.144 4.144 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.164 0.836 32 H 0.154 0.846 33 H 0.120 0.880 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.067 0.933 46 H 0.088 0.912 47 H 0.062 0.938 48 H 0.076 0.924 49 H 0.087 0.913 50 H 0.071 0.929 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.852 9.512 8.282 18.007 hybrid contribution 0.490 -0.821 -0.507 1.082 sum -12.362 8.691 7.775 16.994 Atomic orbital electron populations 1.20801 0.88911 1.03751 1.03003 1.20204 0.97616 0.92495 0.99319 1.21323 0.93796 0.98506 1.00682 1.21344 0.95119 0.97735 1.00409 1.20993 0.99522 0.92733 0.99141 1.19542 0.94036 0.93487 1.00830 1.20186 0.97196 0.97047 0.93894 0.87750 1.21812 0.99626 1.02952 0.95351 1.20701 0.80496 0.82743 0.85144 1.90570 1.58302 1.35259 1.62183 1.47970 1.55293 1.06820 1.22397 1.19710 0.95939 0.83197 0.91916 1.21363 1.02276 1.10081 1.23049 0.95104 1.25696 0.99284 0.98403 0.94151 1.70043 1.33621 1.27510 1.26788 0.85939 0.79840 0.78004 0.80725 1.18450 1.21273 1.16246 1.21462 0.94658 1.01888 0.82577 1.21889 0.98028 1.01327 0.94107 1.21070 0.97413 0.98759 0.93914 1.21848 0.99635 0.97287 1.01470 1.21782 0.98707 1.01550 0.97689 1.21125 0.92607 0.99029 1.01685 0.90532 0.90062 0.90949 0.83550 0.84619 0.88007 0.90933 0.90607 0.93382 0.93903 0.93418 0.92330 0.91105 0.91776 0.93174 0.91736 0.90820 0.93273 0.91189 0.93800 0.92440 0.91332 0.92917 0.85044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.74 10.01 71.23 0.71 -1.03 16 2 C -0.10 -2.29 5.88 -19.87 -0.12 -2.41 16 3 C -0.13 -2.92 9.70 22.27 0.22 -2.71 16 4 C -0.13 -3.50 10.05 22.27 0.22 -3.28 16 5 C -0.11 -3.56 7.82 22.27 0.17 -3.39 16 6 C -0.08 -2.63 4.64 -19.86 -0.09 -2.73 16 7 C -0.06 -2.29 2.12 -12.29 -0.03 -2.31 16 8 H 0.10 3.56 6.01 -2.38 -0.01 3.55 16 9 C -0.14 -5.35 9.02 71.98 0.65 -4.70 16 10 C 0.52 21.73 6.76 87.65 0.59 22.33 16 11 O -0.58 -26.49 14.10 -3.05 -0.04 -26.53 16 12 N -0.60 -24.58 2.46 -826.14 -2.03 -26.61 16 13 C 0.21 9.17 3.94 85.63 0.34 9.51 16 14 C -0.53 -27.65 7.74 25.60 0.20 -27.45 16 15 H 0.03 1.88 8.06 -2.91 -0.02 1.85 16 16 C 0.02 1.26 5.47 84.66 0.46 1.73 16 17 N -0.94 -55.00 13.96 21.45 0.30 -54.70 16 18 Si 0.93 39.15 27.47 68.60 1.88 41.03 16 19 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 20 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 21 H -0.24 -9.04 6.54 99.48 0.65 -8.39 16 22 C 0.12 4.34 5.09 86.38 0.44 4.78 16 23 C -0.11 -3.49 5.01 30.60 0.15 -3.34 16 24 C -0.09 -2.28 2.92 -10.79 -0.03 -2.31 16 25 C -0.15 -3.51 8.95 71.98 0.64 -2.87 16 26 C -0.14 -2.81 9.19 71.98 0.66 -2.15 16 27 C -0.13 -3.57 9.33 22.27 0.21 -3.36 16 28 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.08 1.03 8.09 -2.39 -0.02 1.01 16 30 H 0.07 1.07 8.08 -2.39 -0.02 1.05 16 31 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 32 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 33 H 0.10 3.80 6.87 -2.91 -0.02 3.78 16 34 H 0.07 3.28 5.47 -2.39 -0.01 3.27 16 35 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.05 1.82 7.20 -2.39 -0.02 1.80 16 37 H 0.04 1.76 7.15 -2.39 -0.02 1.75 16 38 H 0.05 1.92 5.15 -2.39 -0.01 1.90 16 39 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 40 H 0.07 2.69 8.07 -2.38 -0.02 2.67 16 41 H 0.06 2.52 6.03 -2.39 -0.01 2.51 16 42 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.04 1.18 6.69 -2.39 -0.02 1.17 16 48 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.05 1.05 8.14 -2.39 -0.02 1.04 16 51 H 0.13 3.23 7.95 -2.91 -0.02 3.21 16 Total: -1.00 -64.73 399.03 6.34 -58.39 By element: Atomic # 1 Polarization: 33.26 SS G_CDS: 0.82 Total: 34.09 kcal Atomic # 6 Polarization: -31.08 SS G_CDS: 5.41 Total: -25.67 kcal Atomic # 7 Polarization: -79.58 SS G_CDS: -1.73 Total: -81.31 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.04 Total: -26.53 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 1.88 Total: 41.03 kcal Total: -64.73 6.34 -58.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121244945.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.456 kcal (2) G-P(sol) polarization free energy of solvation -64.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds