Wall clock time and date at job start Tue Mar 31 2020 11:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00362 * 2 1 4 4 H 1.48497 * 109.47283 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47114 * 299.99602 * 3 2 1 6 6 H 1.48499 * 109.47114 * 59.99781 * 3 2 1 7 7 C 1.37878 * 119.99482 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99756 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00230 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47298 * 180.02562 * 9 7 2 11 11 N 1.46903 * 109.47150 * 185.72373 * 10 9 7 12 12 C 1.47632 * 110.99909 * 298.65876 * 11 10 9 13 13 C 1.50816 * 108.05346 * 150.34786 * 12 11 10 14 14 C 1.53825 * 111.62182 * 95.05391 * 13 12 11 15 15 C 1.54167 * 111.97024 * 319.04598 * 14 13 12 16 16 C 1.50752 * 112.61040 * 318.48701 * 15 14 13 17 17 C 1.39779 * 110.99762 * 169.76623 * 11 10 9 18 18 H 1.08996 * 109.01835 * 68.54007 * 17 11 10 19 19 C 1.52998 * 109.02385 * 309.64161 * 17 11 10 20 20 C 1.53001 * 109.46901 * 296.54469 * 19 17 11 21 21 H 1.08995 * 109.47273 * 305.47607 * 20 19 17 22 22 O 1.42904 * 109.47143 * 65.47553 * 20 19 17 23 23 C 1.50699 * 109.47389 * 185.47426 * 20 19 17 24 24 C 1.38240 * 120.00139 * 279.73168 * 23 20 19 25 25 C 1.38229 * 119.99848 * 179.80766 * 24 23 20 26 26 C 1.38237 * 120.00420 * 0.39437 * 25 24 23 27 27 C 1.38234 * 119.99544 * 359.85814 * 26 25 24 28 28 C 1.38233 * 120.00587 * 359.95324 * 27 26 25 29 29 H 0.97006 * 119.99567 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47246 * 300.00545 * 9 7 2 31 31 H 1.09004 * 109.47085 * 60.00101 * 9 7 2 32 32 H 1.09003 * 109.46919 * 305.72265 * 10 9 7 33 33 H 1.08994 * 109.47194 * 65.72224 * 10 9 7 34 34 H 1.09004 * 109.74266 * 269.98567 * 12 11 10 35 35 H 1.08996 * 109.74400 * 30.70847 * 12 11 10 36 36 H 1.09006 * 109.04629 * 334.50657 * 13 12 11 37 37 H 1.08992 * 108.99703 * 215.57017 * 13 12 11 38 38 H 1.08997 * 108.97976 * 198.40362 * 14 13 12 39 39 H 1.09001 * 108.91175 * 79.64079 * 14 13 12 40 40 H 1.09000 * 108.85516 * 197.68088 * 15 14 13 41 41 H 1.08999 * 108.77424 * 79.23911 * 15 14 13 42 42 H 1.09000 * 109.54974 * 333.15344 * 16 15 14 43 43 H 1.09002 * 109.61997 * 212.93009 * 16 15 14 44 44 H 1.09002 * 109.47293 * 56.54294 * 19 17 11 45 45 H 1.08996 * 109.47128 * 176.54893 * 19 17 11 46 46 H 0.96698 * 114.00116 * 59.99995 * 22 20 19 47 47 H 1.08000 * 119.99663 * 359.97438 * 24 23 20 48 48 H 1.08001 * 119.99853 * 180.23076 * 25 24 23 49 49 H 1.07999 * 120.00166 * 179.83705 * 26 25 24 50 50 H 1.08006 * 119.99877 * 179.97438 * 27 26 25 51 51 H 1.07995 * 120.00430 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2450 -3.6622 0.0027 11 7 1.5157 -4.9300 -0.1343 12 6 0.5897 -5.1326 0.9976 13 6 -0.5786 -5.9494 0.5052 14 6 -0.3798 -7.4489 0.7847 15 6 1.0698 -7.8987 0.5147 16 6 1.6424 -7.2875 -0.7388 17 6 2.3951 -5.9910 -0.3684 18 1 2.9858 -6.1676 0.5304 19 6 3.3344 -5.6161 -1.5164 20 6 2.5214 -5.4231 -2.7982 21 1 1.9262 -6.3160 -2.9888 22 8 1.6553 -4.2964 -2.6478 23 6 3.4570 -5.1865 -3.9557 24 6 4.0012 -3.9322 -4.1593 25 6 4.8625 -3.7162 -5.2187 26 6 5.1732 -4.7524 -6.0793 27 6 4.6249 -6.0054 -5.8787 28 6 3.7666 -6.2225 -4.8170 29 1 -0.4850 0.8401 -0.0004 30 1 0.6245 -2.5563 0.8919 31 1 0.6239 -2.5575 -0.8880 32 1 2.9372 -3.5492 -0.8317 33 1 2.8023 -3.6630 0.9395 34 1 1.0999 -5.6660 1.7998 35 1 0.2371 -4.1678 1.3621 36 1 -0.6901 -5.7994 -0.5687 37 1 -1.4848 -5.6109 1.0074 38 1 -1.0532 -8.0208 0.1464 39 1 -0.6248 -7.6493 1.8278 40 1 1.0896 -8.9842 0.4181 41 1 1.6906 -7.6097 1.3628 42 1 0.8348 -7.0547 -1.4328 43 1 2.3333 -7.9896 -1.2057 44 1 3.8541 -4.6894 -1.2729 45 1 4.0629 -6.4131 -1.6649 46 1 2.1179 -3.4650 -2.4754 47 1 3.7556 -3.1217 -3.4891 48 1 5.2906 -2.7372 -5.3757 49 1 5.8440 -4.5830 -6.9086 50 1 4.8673 -6.8150 -6.5513 51 1 3.3379 -7.2013 -4.6605 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123887588.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:16 Heat of formation + Delta-G solvation = -22.166479 kcal Electronic energy + Delta-G solvation = -28368.392428 eV Core-core repulsion = 24846.344592 eV Total energy + Delta-G solvation = -3522.047836 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.17096 -38.97193 -36.37998 -34.64574 -33.26235 -32.45718 -31.31947 -30.77421 -29.58968 -28.35339 -26.16220 -24.90351 -23.86769 -22.73807 -22.37379 -21.08853 -20.69014 -19.17021 -18.94608 -17.36153 -16.56420 -15.77143 -15.67768 -15.48181 -15.14100 -14.72214 -14.51194 -14.33028 -14.11855 -13.63147 -13.51203 -13.36140 -13.28805 -12.91067 -12.68874 -12.38506 -12.10181 -11.97901 -11.76676 -11.59081 -11.40437 -11.21361 -11.00316 -10.94976 -10.83352 -10.69522 -10.48837 -10.32631 -10.19863 -10.10612 -9.89796 -9.57603 -9.38792 -9.25502 -8.97635 -8.87174 -8.62036 -8.28741 -7.32117 -5.96825 -3.99111 1.39232 1.44774 3.31481 3.39705 3.42190 3.82061 4.41826 4.57330 4.71125 4.86932 4.95363 5.00878 5.02629 5.08969 5.14455 5.18211 5.29815 5.38447 5.39154 5.49808 5.52869 5.60780 5.68737 5.72519 5.81704 5.91522 5.95374 6.02296 6.04434 6.07016 6.11145 6.13383 6.17813 6.28565 6.35214 6.41758 6.45461 6.48678 6.49814 6.56308 6.63724 6.73804 6.76553 6.87772 7.04410 7.06546 7.70679 7.79021 7.94831 8.16004 8.27781 8.31767 8.47880 9.09812 9.64678 11.14095 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.007920 B = 0.005771 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3534.664326 B = 4850.543953 C = 7899.347727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.886 3.114 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.522 4.522 8 H 0.051 0.949 9 C 0.027 3.973 10 C 0.065 3.935 11 N -0.531 5.531 12 C 0.065 3.935 13 C -0.116 4.116 14 C -0.115 4.115 15 C -0.117 4.117 16 C -0.114 4.114 17 C 0.117 3.883 18 H 0.013 0.987 19 C -0.153 4.153 20 C 0.157 3.843 21 H 0.100 0.900 22 O -0.525 6.525 23 C -0.109 4.109 24 C -0.109 4.109 25 C -0.117 4.117 26 C -0.129 4.129 27 C -0.123 4.123 28 C -0.115 4.115 29 H 0.259 0.741 30 H 0.014 0.986 31 H 0.035 0.965 32 H 0.063 0.937 33 H 0.009 0.991 34 H 0.025 0.975 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.079 0.921 43 H 0.057 0.943 44 H 0.077 0.923 45 H 0.065 0.935 46 H 0.375 0.625 47 H 0.125 0.875 48 H 0.121 0.879 49 H 0.117 0.883 50 H 0.118 0.882 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.511 -15.606 -6.193 18.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.714 3.286 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.561 4.561 8 H 0.070 0.930 9 C -0.010 4.010 10 C -0.061 4.061 11 N -0.255 5.255 12 C -0.062 4.062 13 C -0.154 4.154 14 C -0.153 4.153 15 C -0.155 4.155 16 C -0.152 4.152 17 C 0.006 3.994 18 H 0.031 0.969 19 C -0.190 4.190 20 C 0.097 3.903 21 H 0.117 0.883 22 O -0.331 6.331 23 C -0.110 4.110 24 C -0.127 4.127 25 C -0.135 4.135 26 C -0.147 4.147 27 C -0.142 4.142 28 C -0.134 4.134 29 H 0.069 0.931 30 H 0.032 0.968 31 H 0.053 0.947 32 H 0.081 0.919 33 H 0.027 0.973 34 H 0.043 0.957 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.097 0.903 43 H 0.076 0.924 44 H 0.095 0.905 45 H 0.083 0.917 46 H 0.225 0.775 47 H 0.143 0.857 48 H 0.139 0.861 49 H 0.135 0.865 50 H 0.136 0.864 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.638 -15.924 -6.673 18.162 hybrid contribution 1.547 1.271 0.805 2.158 sum 7.184 -14.652 -5.868 17.342 Atomic orbital electron populations 1.69986 1.05941 1.26310 1.50626 1.24960 0.94735 0.98956 0.95419 0.86636 0.80086 0.84278 0.77557 1.19890 1.21051 1.21166 1.21240 0.92818 0.91219 1.50822 0.93028 1.19158 0.94000 0.89770 0.98072 1.22407 0.96977 0.88973 0.97697 1.58781 1.22212 1.02357 1.42188 1.21807 0.93335 1.00344 0.90706 1.21408 0.97766 0.93070 1.03147 1.21918 0.95960 0.97035 1.00369 1.21367 0.96642 0.99174 0.98284 1.21574 1.00096 0.95612 0.97935 1.20286 0.92045 0.91859 0.95175 0.96901 1.22658 0.98072 1.02525 0.95788 1.20633 0.89190 0.91496 0.88962 0.88253 1.86755 1.34919 1.17677 1.93769 1.20941 0.98244 0.93933 0.97862 1.21065 0.96658 0.96937 0.98075 1.21149 0.98147 0.99032 0.95148 1.21109 1.00541 0.93416 0.99601 1.21086 0.97949 0.97098 0.98021 1.20974 0.98670 0.98656 0.95057 0.93139 0.96796 0.94705 0.91926 0.97289 0.95665 0.89584 0.90199 0.92616 0.92796 0.93050 0.93026 0.92759 0.90282 0.92387 0.90477 0.91664 0.77464 0.85664 0.86111 0.86483 0.86439 0.86286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.52 -14.11 9.11 -34.44 -0.31 -14.42 16 8 H 0.05 1.36 7.74 -52.48 -0.41 0.95 16 9 C 0.03 0.67 4.54 -27.88 -0.13 0.54 16 10 C 0.07 1.29 3.39 -3.82 -0.01 1.28 16 11 N -0.53 -9.05 2.53 -231.67 -0.59 -9.64 16 12 C 0.06 1.10 5.16 -4.52 -0.02 1.07 16 13 C -0.12 -1.73 5.41 -27.40 -0.15 -1.88 16 14 C -0.12 -1.42 5.91 -25.69 -0.15 -1.57 16 15 C -0.12 -1.40 5.32 -27.25 -0.14 -1.54 16 16 C -0.11 -1.43 4.01 -27.11 -0.11 -1.54 16 17 C 0.12 1.71 1.75 -70.64 -0.12 1.58 16 18 H 0.01 0.21 7.54 -51.93 -0.39 -0.19 16 19 C -0.15 -2.08 4.32 -26.73 -0.12 -2.19 16 20 C 0.16 2.20 3.00 -27.88 -0.08 2.12 16 21 H 0.10 1.35 6.37 -51.93 -0.33 1.02 16 22 O -0.52 -9.16 10.81 -35.23 -0.38 -9.54 16 23 C -0.11 -1.46 4.97 -104.62 -0.52 -1.98 16 24 C -0.11 -1.50 9.32 -39.58 -0.37 -1.87 16 25 C -0.12 -1.43 10.05 -39.59 -0.40 -1.83 16 26 C -0.13 -1.42 10.05 -39.58 -0.40 -1.82 16 27 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 28 C -0.12 -1.36 9.67 -39.58 -0.38 -1.75 16 29 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.01 0.37 6.27 -51.93 -0.33 0.05 16 31 H 0.03 0.94 7.85 -51.93 -0.41 0.53 16 32 H 0.06 1.18 3.76 -51.93 -0.20 0.98 16 33 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.03 0.41 6.66 -51.93 -0.35 0.06 16 35 H 0.09 1.68 5.65 -51.93 -0.29 1.38 16 36 H 0.08 1.32 7.26 -51.93 -0.38 0.95 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.05 0.69 6.57 -51.93 -0.34 0.34 16 42 H 0.08 1.09 6.29 -51.93 -0.33 0.76 16 43 H 0.06 0.63 8.02 -51.93 -0.42 0.22 16 44 H 0.08 1.15 5.67 -51.93 -0.29 0.85 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.38 6.73 5.27 45.56 0.24 6.97 16 47 H 0.13 1.75 6.78 -52.49 -0.36 1.40 16 48 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 49 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 50 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 51 H 0.12 1.18 8.04 -52.49 -0.42 0.76 16 LS Contribution 376.03 15.07 5.67 5.67 Total: -1.00 -29.19 376.03 -11.43 -40.63 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -7.93 Total: 8.12 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: -3.92 Total: -25.94 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.15 Total: -35.17 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -0.38 Total: -9.54 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.19 -11.43 -40.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123887588.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.459 kcal (2) G-P(sol) polarization free energy of solvation -29.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds