Wall clock time and date at job start Tue Mar 31 2020 11:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00362 * 2 1 4 4 H 1.48497 * 109.47283 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47114 * 299.99602 * 3 2 1 6 6 H 1.48499 * 109.47114 * 59.99781 * 3 2 1 7 7 C 1.37878 * 119.99482 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99756 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00230 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47298 * 180.02562 * 9 7 2 11 11 N 1.46903 * 109.47150 * 185.72373 * 10 9 7 12 12 C 1.47632 * 110.99909 * 298.65876 * 11 10 9 13 13 C 1.50816 * 108.05346 * 150.34786 * 12 11 10 14 14 C 1.53825 * 111.62182 * 95.05391 * 13 12 11 15 15 C 1.54167 * 111.97024 * 319.04598 * 14 13 12 16 16 C 1.50752 * 112.61040 * 318.48701 * 15 14 13 17 17 C 1.39779 * 110.99762 * 169.76623 * 11 10 9 18 18 H 1.08996 * 109.01835 * 68.54007 * 17 11 10 19 19 C 1.52998 * 109.02385 * 309.64161 * 17 11 10 20 20 C 1.53001 * 109.46901 * 296.54469 * 19 17 11 21 21 H 1.08995 * 109.47273 * 305.47607 * 20 19 17 22 22 O 1.42904 * 109.47143 * 65.47553 * 20 19 17 23 23 C 1.50699 * 109.47389 * 185.47426 * 20 19 17 24 24 C 1.38240 * 120.00139 * 279.73168 * 23 20 19 25 25 C 1.38229 * 119.99848 * 179.80766 * 24 23 20 26 26 C 1.38237 * 120.00420 * 0.39437 * 25 24 23 27 27 C 1.38234 * 119.99544 * 359.85814 * 26 25 24 28 28 C 1.38233 * 120.00587 * 359.95324 * 27 26 25 29 29 H 0.97006 * 119.99567 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47246 * 300.00545 * 9 7 2 31 31 H 1.09004 * 109.47085 * 60.00101 * 9 7 2 32 32 H 1.09003 * 109.46919 * 305.72265 * 10 9 7 33 33 H 1.08994 * 109.47194 * 65.72224 * 10 9 7 34 34 H 1.09004 * 109.74266 * 269.98567 * 12 11 10 35 35 H 1.08996 * 109.74400 * 30.70847 * 12 11 10 36 36 H 1.09006 * 109.04629 * 334.50657 * 13 12 11 37 37 H 1.08992 * 108.99703 * 215.57017 * 13 12 11 38 38 H 1.08997 * 108.97976 * 198.40362 * 14 13 12 39 39 H 1.09001 * 108.91175 * 79.64079 * 14 13 12 40 40 H 1.09000 * 108.85516 * 197.68088 * 15 14 13 41 41 H 1.08999 * 108.77424 * 79.23911 * 15 14 13 42 42 H 1.09000 * 109.54974 * 333.15344 * 16 15 14 43 43 H 1.09002 * 109.61997 * 212.93009 * 16 15 14 44 44 H 1.09002 * 109.47293 * 56.54294 * 19 17 11 45 45 H 1.08996 * 109.47128 * 176.54893 * 19 17 11 46 46 H 0.96698 * 114.00116 * 59.99995 * 22 20 19 47 47 H 1.08000 * 119.99663 * 359.97438 * 24 23 20 48 48 H 1.08001 * 119.99853 * 180.23076 * 25 24 23 49 49 H 1.07999 * 120.00166 * 179.83705 * 26 25 24 50 50 H 1.08006 * 119.99877 * 179.97438 * 27 26 25 51 51 H 1.07995 * 120.00430 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2450 -3.6622 0.0027 11 7 1.5157 -4.9300 -0.1343 12 6 0.5897 -5.1326 0.9976 13 6 -0.5786 -5.9494 0.5052 14 6 -0.3798 -7.4489 0.7847 15 6 1.0698 -7.8987 0.5147 16 6 1.6424 -7.2875 -0.7388 17 6 2.3951 -5.9910 -0.3684 18 1 2.9858 -6.1676 0.5304 19 6 3.3344 -5.6161 -1.5164 20 6 2.5214 -5.4231 -2.7982 21 1 1.9262 -6.3160 -2.9888 22 8 1.6553 -4.2964 -2.6478 23 6 3.4570 -5.1865 -3.9557 24 6 4.0012 -3.9322 -4.1593 25 6 4.8625 -3.7162 -5.2187 26 6 5.1732 -4.7524 -6.0793 27 6 4.6249 -6.0054 -5.8787 28 6 3.7666 -6.2225 -4.8170 29 1 -0.4850 0.8401 -0.0004 30 1 0.6245 -2.5563 0.8919 31 1 0.6239 -2.5575 -0.8880 32 1 2.9372 -3.5492 -0.8317 33 1 2.8023 -3.6630 0.9395 34 1 1.0999 -5.6660 1.7998 35 1 0.2371 -4.1678 1.3621 36 1 -0.6901 -5.7994 -0.5687 37 1 -1.4848 -5.6109 1.0074 38 1 -1.0532 -8.0208 0.1464 39 1 -0.6248 -7.6493 1.8278 40 1 1.0896 -8.9842 0.4181 41 1 1.6906 -7.6097 1.3628 42 1 0.8348 -7.0547 -1.4328 43 1 2.3333 -7.9896 -1.2057 44 1 3.8541 -4.6894 -1.2729 45 1 4.0629 -6.4131 -1.6649 46 1 2.1179 -3.4650 -2.4754 47 1 3.7556 -3.1217 -3.4891 48 1 5.2906 -2.7372 -5.3757 49 1 5.8440 -4.5830 -6.9086 50 1 4.8673 -6.8150 -6.5513 51 1 3.3379 -7.2013 -4.6605 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123887588.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:15 Heat of formation + Delta-G solvation = -37.032955 kcal Electronic energy + Delta-G solvation = -28369.037087 eV Core-core repulsion = 24846.344592 eV Total energy + Delta-G solvation = -3522.692495 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.37345 -40.00489 -37.54223 -36.14098 -34.87003 -34.03595 -32.34437 -31.68692 -31.34772 -29.51533 -27.63220 -26.17615 -25.48651 -23.84388 -23.33278 -22.44348 -22.07376 -20.42318 -20.18335 -18.59021 -18.31999 -17.19663 -16.76160 -16.63246 -16.49711 -16.32389 -15.69731 -15.45280 -15.34294 -14.96391 -14.73840 -14.67106 -14.29364 -14.17643 -14.03133 -13.74389 -13.47556 -13.34060 -13.00063 -12.93891 -12.85282 -12.68100 -12.47011 -12.42089 -12.11126 -11.93135 -11.82142 -11.74515 -11.43644 -11.34076 -11.26489 -11.11650 -11.06756 -10.74550 -10.62808 -10.44086 -9.78762 -9.57446 -8.74046 -8.14182 -6.23983 0.46742 0.53283 1.40330 1.41216 1.53162 2.42796 2.89171 3.17812 3.19767 3.63757 3.77540 3.91562 3.97984 4.01892 4.04088 4.17244 4.25076 4.27479 4.31364 4.39250 4.50126 4.53045 4.59282 4.61378 4.65257 4.71789 4.75131 4.78040 4.90734 4.94544 5.00332 5.03490 5.10151 5.12853 5.20110 5.21906 5.27242 5.31175 5.35799 5.44431 5.55203 5.58444 5.60710 5.64745 5.65689 5.76813 5.84745 5.93521 6.15360 6.25112 6.53228 6.88843 6.95289 6.95753 7.44775 8.97649 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.007920 B = 0.005771 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3534.664326 B = 4850.543953 C = 7899.347727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.957 3.043 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.535 4.535 8 H 0.057 0.943 9 C 0.043 3.957 10 C 0.083 3.917 11 N -0.531 5.531 12 C 0.066 3.934 13 C -0.110 4.110 14 C -0.110 4.110 15 C -0.116 4.116 16 C -0.106 4.106 17 C 0.111 3.889 18 H 0.010 0.990 19 C -0.144 4.144 20 C 0.160 3.840 21 H 0.108 0.892 22 O -0.547 6.547 23 C -0.123 4.123 24 C -0.133 4.133 25 C -0.129 4.129 26 C -0.129 4.129 27 C -0.123 4.123 28 C -0.120 4.120 29 H 0.261 0.739 30 H -0.016 1.016 31 H 0.004 0.996 32 H 0.074 0.926 33 H -0.002 1.002 34 H 0.035 0.965 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.077 0.923 41 H 0.047 0.953 42 H 0.067 0.933 43 H 0.084 0.916 44 H 0.059 0.941 45 H 0.089 0.911 46 H 0.368 0.632 47 H 0.108 0.892 48 H 0.130 0.870 49 H 0.143 0.857 50 H 0.148 0.852 51 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.331 -17.824 -7.395 21.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.192 4.192 3 Si 0.782 3.218 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.208 1.208 7 C -0.574 4.574 8 H 0.075 0.925 9 C 0.006 3.994 10 C -0.043 4.043 11 N -0.255 5.255 12 C -0.061 4.061 13 C -0.148 4.148 14 C -0.147 4.147 15 C -0.153 4.153 16 C -0.144 4.144 17 C 0.001 3.999 18 H 0.028 0.972 19 C -0.182 4.182 20 C 0.101 3.899 21 H 0.126 0.874 22 O -0.353 6.353 23 C -0.123 4.123 24 C -0.151 4.151 25 C -0.147 4.147 26 C -0.147 4.147 27 C -0.140 4.140 28 C -0.138 4.138 29 H 0.069 0.931 30 H 0.002 0.998 31 H 0.023 0.977 32 H 0.092 0.908 33 H 0.016 0.984 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.066 0.934 42 H 0.086 0.914 43 H 0.103 0.897 44 H 0.077 0.923 45 H 0.107 0.893 46 H 0.217 0.783 47 H 0.126 0.874 48 H 0.148 0.852 49 H 0.161 0.839 50 H 0.166 0.834 51 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.470 -18.168 -7.875 21.163 hybrid contribution 0.976 1.924 1.143 2.442 sum 8.446 -16.244 -6.731 19.507 Atomic orbital electron populations 1.70128 1.07718 1.27317 1.51831 1.25845 0.95548 1.02856 0.94994 0.85523 0.79209 0.79490 0.77552 1.18593 1.20568 1.20836 1.21643 0.93263 0.92339 1.50160 0.92471 1.18905 0.94032 0.91433 0.95060 1.22059 0.95704 0.89006 0.97549 1.58749 1.22438 1.02123 1.42175 1.21754 0.94229 0.98955 0.91131 1.21319 0.96657 0.95181 1.01650 1.21875 0.96964 0.94503 1.01370 1.21369 0.95793 1.00664 0.97520 1.21528 1.00019 0.94646 0.98210 1.20464 0.92036 0.92019 0.95431 0.97213 1.22576 0.98023 1.02440 0.95178 1.20717 0.89179 0.90405 0.89612 0.87398 1.86727 1.36400 1.18236 1.93984 1.20876 0.98717 0.94445 0.98300 1.21086 0.98110 0.96976 0.98940 1.21359 0.98049 1.00205 0.95074 1.21467 1.00407 0.93116 0.99719 1.21478 0.96876 0.97834 0.97837 1.21256 0.98690 0.99026 0.94788 0.93059 0.99766 0.97743 0.90816 0.98358 0.94669 0.93202 0.92075 0.92808 0.91377 0.92009 0.90455 0.93430 0.91424 0.89734 0.92250 0.89270 0.78332 0.87430 0.85164 0.83892 0.83445 0.84169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.04 13.29 21.45 0.28 -56.76 16 2 C 0.01 0.32 5.46 84.65 0.46 0.78 16 3 Si 0.96 44.44 29.54 68.60 2.03 46.47 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 6 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 7 C -0.54 -30.06 9.11 25.60 0.23 -29.83 16 8 H 0.06 3.08 7.74 -2.91 -0.02 3.05 16 9 C 0.04 2.26 4.54 29.85 0.14 2.40 16 10 C 0.08 3.48 3.39 86.30 0.29 3.77 16 11 N -0.53 -18.73 2.53 -886.87 -2.24 -20.98 16 12 C 0.07 2.33 5.16 85.45 0.44 2.78 16 13 C -0.11 -3.34 5.41 30.16 0.16 -3.17 16 14 C -0.11 -2.50 5.91 31.27 0.18 -2.32 16 15 C -0.12 -2.45 5.32 30.26 0.16 -2.29 16 16 C -0.11 -2.42 4.01 30.35 0.12 -2.30 16 17 C 0.11 3.15 1.75 46.68 0.08 3.23 16 18 H 0.01 0.30 7.54 -2.39 -0.02 0.29 16 19 C -0.14 -3.83 4.32 30.59 0.13 -3.70 16 20 C 0.16 4.44 3.00 29.85 0.09 4.53 16 21 H 0.11 2.78 6.37 -2.39 -0.02 2.76 16 22 O -0.55 -20.03 10.81 -148.98 -1.61 -21.64 16 23 C -0.12 -3.20 4.97 -19.86 -0.10 -3.30 16 24 C -0.13 -3.70 9.32 22.27 0.21 -3.49 16 25 C -0.13 -3.06 10.05 22.27 0.22 -2.84 16 26 C -0.13 -2.54 10.05 22.27 0.22 -2.32 16 27 C -0.12 -2.28 10.05 22.27 0.22 -2.05 16 28 C -0.12 -2.53 9.67 22.27 0.22 -2.32 16 29 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16 30 H -0.02 -0.92 6.27 -2.39 -0.01 -0.94 16 31 H 0.00 0.24 7.85 -2.38 -0.02 0.23 16 32 H 0.07 2.92 3.76 -2.39 -0.01 2.91 16 33 H 0.00 -0.08 8.14 -2.39 -0.02 -0.09 16 34 H 0.04 1.16 6.66 -2.38 -0.02 1.14 16 35 H 0.05 2.11 5.65 -2.39 -0.01 2.09 16 36 H 0.06 2.08 7.26 -2.38 -0.02 2.06 16 37 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.05 1.09 6.57 -2.39 -0.02 1.07 16 42 H 0.07 1.74 6.29 -2.39 -0.02 1.73 16 43 H 0.08 1.51 8.02 -2.39 -0.02 1.50 16 44 H 0.06 1.79 5.67 -2.39 -0.01 1.77 16 45 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.37 14.23 5.27 -74.06 -0.39 13.84 16 47 H 0.11 3.26 6.78 -2.91 -0.02 3.24 16 48 H 0.13 2.70 8.06 -2.91 -0.02 2.68 16 49 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 50 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16 51 H 0.14 2.29 8.04 -2.91 -0.02 2.27 16 Total: -1.00 -65.73 376.03 2.47 -63.26 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: 0.52 Total: 32.09 kcal Atomic # 6 Polarization: -45.94 SS G_CDS: 3.49 Total: -42.44 kcal Atomic # 7 Polarization: -75.77 SS G_CDS: -1.96 Total: -77.73 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -1.61 Total: -21.64 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -65.73 2.47 -63.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123887588.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.224 kcal (2) G-P(sol) polarization free energy of solvation -65.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds