Wall clock time and date at job start Tue Mar 31 2020 11:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00226 * 2 1 4 4 H 1.48501 * 109.47271 * 240.00071 * 3 2 1 5 5 H 1.48497 * 109.46963 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46872 * 119.99884 * 3 2 1 7 7 C 1.37884 * 119.99700 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99523 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00127 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47157 * 180.02562 * 9 7 2 11 11 N 1.46892 * 109.47362 * 184.45617 * 10 9 7 12 12 C 1.47632 * 111.00116 * 65.51744 * 11 10 9 13 13 C 1.50816 * 108.04284 * 150.32418 * 12 11 10 14 14 C 1.53818 * 111.61993 * 95.06679 * 13 12 11 15 15 C 1.54176 * 111.96731 * 319.04440 * 14 13 12 16 16 C 1.50759 * 112.61326 * 318.48311 * 15 14 13 17 17 C 1.39784 * 110.99779 * 296.62028 * 11 10 9 18 18 H 1.08998 * 109.02238 * 68.62442 * 17 11 10 19 19 C 1.52993 * 109.02441 * 309.72001 * 17 11 10 20 20 C 1.52998 * 109.47418 * 178.18710 * 19 17 11 21 21 H 1.09005 * 109.47153 * 53.87690 * 20 19 17 22 22 O 1.42901 * 109.46839 * 293.88004 * 20 19 17 23 23 C 1.50695 * 109.47350 * 173.87856 * 20 19 17 24 24 C 1.38239 * 120.00335 * 264.99831 * 23 20 19 25 25 C 1.38227 * 120.00148 * 179.97438 * 24 23 20 26 26 C 1.38236 * 120.00353 * 0.02562 * 25 24 23 27 27 C 1.38234 * 119.99467 * 0.24959 * 26 25 24 28 28 C 1.38231 * 120.00166 * 359.49495 * 27 26 25 29 29 H 0.97000 * 119.99997 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46881 * 59.99758 * 9 7 2 31 31 H 1.09000 * 109.46925 * 300.00278 * 9 7 2 32 32 H 1.09003 * 109.47200 * 64.45473 * 10 9 7 33 33 H 1.09001 * 109.47200 * 304.45974 * 10 9 7 34 34 H 1.08997 * 109.74894 * 269.96352 * 12 11 10 35 35 H 1.08995 * 109.74454 * 30.64391 * 12 11 10 36 36 H 1.08999 * 109.05064 * 215.62020 * 13 12 11 37 37 H 1.09006 * 109.05508 * 334.58758 * 13 12 11 38 38 H 1.08996 * 108.98285 * 79.68528 * 14 13 12 39 39 H 1.09002 * 108.98522 * 198.49251 * 14 13 12 40 40 H 1.08996 * 108.85584 * 79.29153 * 15 14 13 41 41 H 1.09004 * 108.85319 * 197.78128 * 15 14 13 42 42 H 1.08994 * 109.54154 * 333.14467 * 16 15 14 43 43 H 1.08997 * 109.54598 * 212.87544 * 16 15 14 44 44 H 1.08999 * 109.47439 * 58.18275 * 19 17 11 45 45 H 1.09008 * 109.47421 * 298.18836 * 19 17 11 46 46 H 0.96706 * 113.99835 * 296.36212 * 22 20 19 47 47 H 1.08003 * 119.99733 * 0.02562 * 24 23 20 48 48 H 1.08002 * 119.99771 * 180.02562 * 25 24 23 49 49 H 1.08001 * 120.00101 * 179.97438 * 26 25 24 50 50 H 1.08004 * 119.99571 * 179.72391 * 27 26 25 51 51 H 1.08001 * 119.99948 * 180.24782 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 7 1.5138 -4.9316 -0.1081 12 6 0.8303 -5.0395 -1.4122 13 6 0.7475 -6.5006 -1.7767 14 6 -0.5984 -7.1145 -1.3551 15 6 -1.0488 -6.6186 0.0335 16 6 0.0875 -6.5526 1.0221 17 6 0.6896 -5.1306 1.0032 18 1 -0.1215 -4.4028 0.9788 19 6 1.5103 -4.9196 2.2770 20 6 0.6071 -5.0907 3.5000 21 1 0.1003 -6.0542 3.4455 22 8 -0.3640 -4.0426 3.5252 23 6 1.4419 -5.0323 4.7532 24 6 1.8958 -6.2005 5.3364 25 6 2.6620 -6.1469 6.4857 26 6 2.9739 -4.9251 7.0521 27 6 2.5153 -3.7572 6.4721 28 6 1.7535 -3.8105 5.3199 29 1 -0.4850 0.8400 -0.0004 30 1 0.6239 -2.5567 -0.8903 31 1 0.6246 -2.5571 0.8897 32 1 2.8180 -3.6504 0.9267 33 1 2.9232 -3.5605 -0.8479 34 1 -0.1734 -4.6211 -1.3377 35 1 1.3981 -4.5015 -2.1712 36 1 0.8640 -6.6054 -2.8554 37 1 1.5542 -7.0380 -1.2781 38 1 -1.3565 -6.8459 -2.0906 39 1 -0.5001 -8.1998 -1.3278 40 1 -1.4826 -5.6242 -0.0713 41 1 -1.8106 -7.2959 0.4194 42 1 0.8537 -7.2768 0.7457 43 1 -0.2851 -6.7775 2.0214 44 1 1.9327 -3.9148 2.2749 45 1 2.3165 -5.6524 2.3154 46 1 0.0141 -3.1586 3.6293 47 1 1.6524 -7.1551 4.8937 48 1 3.0169 -7.0596 6.9411 49 1 3.5722 -4.8833 7.9503 50 1 2.7552 -2.8028 6.9172 51 1 1.3985 -2.8978 4.8645 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123887795.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:19 Heat of formation + Delta-G solvation = -32.963626 kcal Electronic energy + Delta-G solvation = -28077.281957 eV Core-core repulsion = 24554.765921 eV Total energy + Delta-G solvation = -3522.516036 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.09524 -39.10236 -36.66625 -34.92203 -33.05752 -32.54899 -31.40209 -30.83191 -29.48137 -28.43358 -26.05828 -25.04137 -23.68649 -22.67943 -22.40196 -21.58780 -20.88549 -19.13940 -18.77739 -17.44465 -16.51217 -15.89741 -15.84683 -15.55585 -15.14265 -14.65566 -14.58491 -14.39408 -14.26305 -13.65095 -13.41707 -13.36327 -13.33853 -13.10948 -12.68828 -12.38038 -12.24723 -11.93306 -11.66324 -11.64399 -11.36122 -11.28094 -11.06865 -10.91491 -10.82805 -10.71816 -10.60631 -10.34272 -10.24843 -10.04436 -9.89054 -9.84221 -9.68095 -9.48577 -9.10931 -8.92464 -8.66586 -8.35682 -7.31095 -6.01225 -4.04528 1.33332 1.39644 3.30634 3.35889 3.37968 3.75704 4.41111 4.48348 4.71584 4.75393 4.84815 4.96780 5.04401 5.09329 5.13705 5.18289 5.33050 5.33806 5.42494 5.45842 5.53160 5.60591 5.64529 5.66977 5.93966 5.95262 5.97798 6.03013 6.03955 6.07800 6.11445 6.25171 6.34071 6.38032 6.41138 6.43021 6.44764 6.49467 6.51569 6.57928 6.65044 6.67751 6.79021 6.84968 6.98384 6.99174 7.61915 7.69678 7.76679 7.88562 8.02245 8.18151 8.43518 9.02968 9.59655 11.09162 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.007772 B = 0.005501 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3601.792411 B = 5088.952258 C = 7918.551084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.053 0.947 9 C -0.005 4.005 10 C 0.056 3.944 11 N -0.554 5.554 12 C 0.070 3.930 13 C -0.116 4.116 14 C -0.115 4.115 15 C -0.120 4.120 16 C -0.115 4.115 17 C 0.112 3.888 18 H 0.045 0.955 19 C -0.145 4.145 20 C 0.144 3.856 21 H 0.107 0.893 22 O -0.553 6.553 23 C -0.107 4.107 24 C -0.114 4.114 25 C -0.121 4.121 26 C -0.127 4.127 27 C -0.116 4.116 28 C -0.110 4.110 29 H 0.260 0.740 30 H 0.015 0.985 31 H 0.019 0.981 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.042 0.958 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.061 0.939 41 H 0.052 0.948 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.084 0.916 45 H 0.072 0.928 46 H 0.378 0.622 47 H 0.121 0.879 48 H 0.119 0.881 49 H 0.118 0.882 50 H 0.121 0.879 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.068 -14.489 8.067 16.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.071 0.929 9 C -0.044 4.044 10 C -0.071 4.071 11 N -0.278 5.278 12 C -0.057 4.057 13 C -0.154 4.154 14 C -0.152 4.152 15 C -0.158 4.158 16 C -0.153 4.153 17 C 0.001 3.999 18 H 0.063 0.937 19 C -0.183 4.183 20 C 0.085 3.915 21 H 0.124 0.876 22 O -0.359 6.359 23 C -0.107 4.107 24 C -0.132 4.132 25 C -0.139 4.139 26 C -0.145 4.145 27 C -0.134 4.134 28 C -0.128 4.128 29 H 0.070 0.930 30 H 0.033 0.967 31 H 0.037 0.963 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.102 0.898 45 H 0.090 0.910 46 H 0.227 0.773 47 H 0.139 0.861 48 H 0.137 0.863 49 H 0.136 0.864 50 H 0.139 0.861 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.803 -15.235 8.000 17.301 hybrid contribution 0.328 2.143 0.068 2.169 sum 2.131 -13.092 8.067 15.525 Atomic orbital electron populations 1.69957 1.05991 1.26626 1.50556 1.24992 0.94767 0.99073 0.95313 0.86722 0.79637 0.83397 0.78621 1.20281 1.21339 1.20288 1.21126 0.92867 0.91015 1.50896 0.92856 1.19626 0.94842 0.92511 0.97383 1.22439 0.96943 0.86810 1.00870 1.59221 1.31353 1.35806 1.01393 1.21634 0.97792 0.95380 0.90887 1.21439 0.97365 0.96770 0.99805 1.21901 0.97406 0.99398 0.96530 1.21385 0.97988 1.01491 0.94916 1.21625 0.97727 0.97524 0.98408 1.20246 0.94568 0.95513 0.89551 0.93739 1.22542 0.98351 1.03895 0.93513 1.21006 0.88392 0.92241 0.89885 0.87579 1.86583 1.35232 1.18074 1.96050 1.20717 0.98720 0.93653 0.97601 1.20963 0.98504 0.97717 0.95993 1.21095 0.98817 0.97734 0.96299 1.21126 1.00493 0.92725 1.00168 1.21133 0.97921 0.98373 0.95981 1.20995 0.98166 0.97581 0.96064 0.92998 0.96715 0.96273 0.91738 0.92363 0.93997 0.91244 0.92706 0.91022 0.92789 0.92891 0.92036 0.92953 0.91400 0.91876 0.89764 0.90962 0.77312 0.86093 0.86264 0.86358 0.86056 0.85804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.29 9.11 -34.44 -0.31 -14.60 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C -0.01 -0.13 4.27 -27.88 -0.12 -0.25 16 10 C 0.06 1.13 4.58 -3.83 -0.02 1.11 16 11 N -0.55 -9.68 3.96 -231.68 -0.92 -10.60 16 12 C 0.07 1.19 4.27 -4.52 -0.02 1.17 16 13 C -0.12 -1.58 5.41 -27.40 -0.15 -1.73 16 14 C -0.11 -1.44 5.91 -25.69 -0.15 -1.59 16 15 C -0.12 -1.64 5.31 -27.24 -0.14 -1.78 16 16 C -0.12 -1.59 4.93 -27.10 -0.13 -1.72 16 17 C 0.11 1.84 1.04 -70.63 -0.07 1.77 16 18 H 0.04 0.90 5.86 -51.93 -0.30 0.60 16 19 C -0.15 -2.23 3.78 -26.74 -0.10 -2.33 16 20 C 0.14 2.02 3.05 -27.89 -0.09 1.93 16 21 H 0.11 1.39 5.69 -51.93 -0.30 1.10 16 22 O -0.55 -8.94 12.74 -35.23 -0.45 -9.39 16 23 C -0.11 -1.40 5.00 -104.63 -0.52 -1.93 16 24 C -0.11 -1.33 9.68 -39.58 -0.38 -1.71 16 25 C -0.12 -1.30 10.05 -39.59 -0.40 -1.69 16 26 C -0.13 -1.37 10.05 -39.58 -0.40 -1.76 16 27 C -0.12 -1.37 10.05 -39.59 -0.40 -1.77 16 28 C -0.11 -1.45 9.32 -39.58 -0.37 -1.82 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.01 0.40 7.09 -51.93 -0.37 0.03 16 31 H 0.02 0.50 6.69 -51.93 -0.35 0.16 16 32 H 0.06 1.29 5.72 -51.93 -0.30 0.99 16 33 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 34 H 0.04 0.78 6.45 -51.93 -0.34 0.44 16 35 H 0.07 1.22 7.68 -51.93 -0.40 0.82 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 1.00 7.26 -51.93 -0.38 0.62 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.97 6.57 -51.93 -0.34 0.63 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.92 7.11 -51.93 -0.37 0.55 16 43 H 0.06 0.81 5.57 -51.93 -0.29 0.52 16 44 H 0.08 1.48 5.65 -51.93 -0.29 1.19 16 45 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 46 H 0.38 5.72 7.26 45.56 0.33 6.05 16 47 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 48 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 49 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 50 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 51 H 0.12 1.59 6.54 -52.49 -0.34 1.25 16 LS Contribution 380.17 15.07 5.73 5.73 Total: -1.00 -29.93 380.17 -11.58 -41.52 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -7.79 Total: 9.14 kcal Atomic # 6 Polarization: -23.25 SS G_CDS: -3.87 Total: -27.12 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: -0.18 Total: -36.22 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.45 Total: -9.39 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.93 -11.58 -41.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123887795.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.552 kcal (2) G-P(sol) polarization free energy of solvation -29.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds