Wall clock time and date at job start Tue Mar 31 2020 11:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00226 * 2 1 4 4 H 1.48501 * 109.47271 * 240.00071 * 3 2 1 5 5 H 1.48497 * 109.46963 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46872 * 119.99884 * 3 2 1 7 7 C 1.37884 * 119.99700 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99523 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00127 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47157 * 180.02562 * 9 7 2 11 11 N 1.46892 * 109.47362 * 184.45617 * 10 9 7 12 12 C 1.47632 * 111.00116 * 65.51744 * 11 10 9 13 13 C 1.50816 * 108.04284 * 150.32418 * 12 11 10 14 14 C 1.53818 * 111.61993 * 95.06679 * 13 12 11 15 15 C 1.54176 * 111.96731 * 319.04440 * 14 13 12 16 16 C 1.50759 * 112.61326 * 318.48311 * 15 14 13 17 17 C 1.39784 * 110.99779 * 296.62028 * 11 10 9 18 18 H 1.08998 * 109.02238 * 68.62442 * 17 11 10 19 19 C 1.52993 * 109.02441 * 309.72001 * 17 11 10 20 20 C 1.52998 * 109.47418 * 178.18710 * 19 17 11 21 21 H 1.09005 * 109.47153 * 53.87690 * 20 19 17 22 22 O 1.42901 * 109.46839 * 293.88004 * 20 19 17 23 23 C 1.50695 * 109.47350 * 173.87856 * 20 19 17 24 24 C 1.38239 * 120.00335 * 264.99831 * 23 20 19 25 25 C 1.38227 * 120.00148 * 179.97438 * 24 23 20 26 26 C 1.38236 * 120.00353 * 0.02562 * 25 24 23 27 27 C 1.38234 * 119.99467 * 0.24959 * 26 25 24 28 28 C 1.38231 * 120.00166 * 359.49495 * 27 26 25 29 29 H 0.97000 * 119.99997 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46881 * 59.99758 * 9 7 2 31 31 H 1.09000 * 109.46925 * 300.00278 * 9 7 2 32 32 H 1.09003 * 109.47200 * 64.45473 * 10 9 7 33 33 H 1.09001 * 109.47200 * 304.45974 * 10 9 7 34 34 H 1.08997 * 109.74894 * 269.96352 * 12 11 10 35 35 H 1.08995 * 109.74454 * 30.64391 * 12 11 10 36 36 H 1.08999 * 109.05064 * 215.62020 * 13 12 11 37 37 H 1.09006 * 109.05508 * 334.58758 * 13 12 11 38 38 H 1.08996 * 108.98285 * 79.68528 * 14 13 12 39 39 H 1.09002 * 108.98522 * 198.49251 * 14 13 12 40 40 H 1.08996 * 108.85584 * 79.29153 * 15 14 13 41 41 H 1.09004 * 108.85319 * 197.78128 * 15 14 13 42 42 H 1.08994 * 109.54154 * 333.14467 * 16 15 14 43 43 H 1.08997 * 109.54598 * 212.87544 * 16 15 14 44 44 H 1.08999 * 109.47439 * 58.18275 * 19 17 11 45 45 H 1.09008 * 109.47421 * 298.18836 * 19 17 11 46 46 H 0.96706 * 113.99835 * 296.36212 * 22 20 19 47 47 H 1.08003 * 119.99733 * 0.02562 * 24 23 20 48 48 H 1.08002 * 119.99771 * 180.02562 * 25 24 23 49 49 H 1.08001 * 120.00101 * 179.97438 * 26 25 24 50 50 H 1.08004 * 119.99571 * 179.72391 * 27 26 25 51 51 H 1.08001 * 119.99948 * 180.24782 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 7 1.5138 -4.9316 -0.1081 12 6 0.8303 -5.0395 -1.4122 13 6 0.7475 -6.5006 -1.7767 14 6 -0.5984 -7.1145 -1.3551 15 6 -1.0488 -6.6186 0.0335 16 6 0.0875 -6.5526 1.0221 17 6 0.6896 -5.1306 1.0032 18 1 -0.1215 -4.4028 0.9788 19 6 1.5103 -4.9196 2.2770 20 6 0.6071 -5.0907 3.5000 21 1 0.1003 -6.0542 3.4455 22 8 -0.3640 -4.0426 3.5252 23 6 1.4419 -5.0323 4.7532 24 6 1.8958 -6.2005 5.3364 25 6 2.6620 -6.1469 6.4857 26 6 2.9739 -4.9251 7.0521 27 6 2.5153 -3.7572 6.4721 28 6 1.7535 -3.8105 5.3199 29 1 -0.4850 0.8400 -0.0004 30 1 0.6239 -2.5567 -0.8903 31 1 0.6246 -2.5571 0.8897 32 1 2.8180 -3.6504 0.9267 33 1 2.9232 -3.5605 -0.8479 34 1 -0.1734 -4.6211 -1.3377 35 1 1.3981 -4.5015 -2.1712 36 1 0.8640 -6.6054 -2.8554 37 1 1.5542 -7.0380 -1.2781 38 1 -1.3565 -6.8459 -2.0906 39 1 -0.5001 -8.1998 -1.3278 40 1 -1.4826 -5.6242 -0.0713 41 1 -1.8106 -7.2959 0.4194 42 1 0.8537 -7.2768 0.7457 43 1 -0.2851 -6.7775 2.0214 44 1 1.9327 -3.9148 2.2749 45 1 2.3165 -5.6524 2.3154 46 1 0.0141 -3.1586 3.6293 47 1 1.6524 -7.1551 4.8937 48 1 3.0169 -7.0596 6.9411 49 1 3.5722 -4.8833 7.9503 50 1 2.7552 -2.8028 6.9172 51 1 1.3985 -2.8978 4.8645 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123887795.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:18 Heat of formation + Delta-G solvation = -50.155693 kcal Electronic energy + Delta-G solvation = -28078.027461 eV Core-core repulsion = 24554.765921 eV Total energy + Delta-G solvation = -3523.261540 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.35637 -40.18464 -37.81910 -36.38425 -34.85062 -34.05900 -32.42405 -31.72019 -31.30540 -29.62882 -27.63038 -26.30341 -25.34627 -23.76659 -23.38614 -23.32254 -21.93806 -20.36912 -20.19186 -18.61144 -18.49838 -17.21514 -16.96244 -16.71843 -16.53528 -16.38782 -15.82543 -15.61062 -15.41346 -14.87818 -14.79845 -14.59584 -14.43173 -14.26534 -14.20928 -13.92797 -13.42590 -13.31976 -13.20369 -12.97942 -12.85843 -12.67527 -12.64528 -12.42840 -12.11824 -12.02057 -11.88350 -11.78392 -11.65428 -11.41993 -11.33672 -11.31477 -11.14272 -10.96453 -10.82536 -10.54019 -9.81781 -9.61249 -8.93072 -8.19545 -6.32242 0.42067 0.50398 1.37251 1.39489 1.47506 2.38437 2.82678 3.11789 3.12488 3.51922 3.63830 3.79689 3.96015 3.96920 4.06660 4.11400 4.19060 4.27076 4.31974 4.34529 4.38100 4.42295 4.57274 4.64006 4.64253 4.68078 4.75516 4.80331 4.88380 4.92956 4.97011 5.03881 5.07524 5.11040 5.11212 5.15239 5.19750 5.32094 5.33837 5.42018 5.48679 5.56491 5.56935 5.59755 5.62351 5.65102 5.69436 5.79976 6.09122 6.11667 6.41163 6.63009 6.68954 6.85921 7.37036 8.90304 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.007772 B = 0.005501 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3601.792411 B = 5088.952258 C = 7918.551084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.959 3.041 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.539 4.539 8 H 0.059 0.941 9 C 0.011 3.989 10 C 0.069 3.931 11 N -0.539 5.539 12 C 0.069 3.931 13 C -0.108 4.108 14 C -0.111 4.111 15 C -0.121 4.121 16 C -0.105 4.105 17 C 0.113 3.887 18 H -0.002 1.002 19 C -0.134 4.134 20 C 0.150 3.850 21 H 0.120 0.880 22 O -0.572 6.572 23 C -0.123 4.123 24 C -0.119 4.119 25 C -0.121 4.121 26 C -0.127 4.127 27 C -0.128 4.128 28 C -0.134 4.134 29 H 0.262 0.738 30 H -0.019 1.019 31 H -0.007 1.007 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.014 0.986 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.055 0.945 39 H 0.080 0.920 40 H 0.027 0.973 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.054 0.946 45 H 0.086 0.914 46 H 0.377 0.623 47 H 0.142 0.858 48 H 0.150 0.850 49 H 0.145 0.855 50 H 0.133 0.867 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.771 -16.777 9.075 19.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.192 4.192 3 Si 0.784 3.216 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.578 4.578 8 H 0.077 0.923 9 C -0.027 4.027 10 C -0.058 4.058 11 N -0.262 5.262 12 C -0.058 4.058 13 C -0.146 4.146 14 C -0.149 4.149 15 C -0.159 4.159 16 C -0.143 4.143 17 C 0.002 3.998 18 H 0.016 0.984 19 C -0.172 4.172 20 C 0.091 3.909 21 H 0.138 0.862 22 O -0.379 6.379 23 C -0.123 4.123 24 C -0.136 4.136 25 C -0.139 4.139 26 C -0.145 4.145 27 C -0.146 4.146 28 C -0.152 4.152 29 H 0.070 0.930 30 H -0.001 1.001 31 H 0.011 0.989 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.033 0.967 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.046 0.954 41 H 0.092 0.908 42 H 0.102 0.898 43 H 0.095 0.905 44 H 0.073 0.927 45 H 0.105 0.895 46 H 0.226 0.774 47 H 0.160 0.840 48 H 0.168 0.832 49 H 0.163 0.837 50 H 0.151 0.849 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.515 -17.542 9.004 20.029 hybrid contribution -0.232 2.862 -0.217 2.880 sum 3.282 -14.680 8.787 17.421 Atomic orbital electron populations 1.70111 1.07797 1.27599 1.51541 1.25900 0.95585 1.03055 0.94707 0.85595 0.78345 0.78474 0.79218 1.19299 1.21051 1.19049 1.21556 0.93354 0.92230 1.50644 0.92296 1.19411 0.94840 0.94053 0.94407 1.22197 0.95978 0.86575 1.01042 1.59392 1.31394 1.33267 1.02129 1.21700 0.95864 0.97964 0.90285 1.21363 0.98420 0.93768 1.01007 1.21891 0.96552 1.00818 0.95616 1.21400 0.98379 1.00184 0.95942 1.21569 0.97997 0.95268 0.99454 1.20277 0.93229 0.96529 0.89744 0.98397 1.22405 0.98677 1.02418 0.93668 1.21034 0.88025 0.91906 0.89957 0.86229 1.86545 1.36596 1.18607 1.96162 1.20644 0.99636 0.94463 0.97555 1.21251 0.98242 0.97800 0.96353 1.21490 0.97809 0.98915 0.95664 1.21504 0.99948 0.92286 1.00749 1.21367 0.97803 0.99768 0.95619 1.21074 0.99455 0.97421 0.97223 0.92971 1.00097 0.98879 0.91112 0.92471 0.96747 0.92437 0.90970 0.90393 0.92618 0.90116 0.95433 0.90843 0.89806 0.90454 0.92748 0.89543 0.77431 0.84028 0.83249 0.83673 0.84872 0.87133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.33 13.29 21.45 0.28 -57.05 16 2 C 0.01 0.33 5.46 84.66 0.46 0.79 16 3 Si 0.96 44.55 29.54 68.60 2.03 46.58 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 5 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 7 C -0.54 -30.75 9.11 25.60 0.23 -30.52 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 9 C 0.01 0.60 4.27 29.85 0.13 0.73 16 10 C 0.07 2.94 4.58 86.30 0.40 3.34 16 11 N -0.54 -19.38 3.96 -886.89 -3.51 -22.89 16 12 C 0.07 2.42 4.27 85.45 0.36 2.78 16 13 C -0.11 -2.79 5.41 30.16 0.16 -2.63 16 14 C -0.11 -2.58 5.91 31.27 0.18 -2.39 16 15 C -0.12 -3.22 5.31 30.26 0.16 -3.06 16 16 C -0.11 -2.79 4.93 30.36 0.15 -2.64 16 17 C 0.11 3.85 1.04 46.68 0.05 3.90 16 18 H 0.00 -0.08 5.86 -2.39 -0.01 -0.09 16 19 C -0.13 -4.21 3.78 30.59 0.12 -4.10 16 20 C 0.15 4.27 3.05 29.85 0.09 4.36 16 21 H 0.12 3.03 5.69 -2.38 -0.01 3.02 16 22 O -0.57 -19.89 12.74 -148.98 -1.90 -21.79 16 23 C -0.12 -3.21 5.00 -19.87 -0.10 -3.31 16 24 C -0.12 -2.51 9.68 22.27 0.22 -2.30 16 25 C -0.12 -2.21 10.05 22.27 0.22 -1.99 16 26 C -0.13 -2.42 10.05 22.27 0.22 -2.20 16 27 C -0.13 -2.93 10.05 22.27 0.22 -2.70 16 28 C -0.13 -3.63 9.32 22.27 0.21 -3.42 16 29 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 30 H -0.02 -1.15 7.09 -2.39 -0.02 -1.16 16 31 H -0.01 -0.41 6.69 -2.39 -0.02 -0.43 16 32 H 0.07 2.93 5.72 -2.39 -0.01 2.92 16 33 H 0.06 2.43 7.93 -2.39 -0.02 2.41 16 34 H 0.01 0.57 6.45 -2.39 -0.02 0.56 16 35 H 0.06 2.11 7.68 -2.39 -0.02 2.09 16 36 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.08 1.96 7.26 -2.38 -0.02 1.94 16 38 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.03 0.91 6.57 -2.39 -0.02 0.89 16 41 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 42 H 0.08 2.01 7.11 -2.39 -0.02 1.99 16 43 H 0.08 1.84 5.57 -2.39 -0.01 1.82 16 44 H 0.05 2.03 5.65 -2.39 -0.01 2.02 16 45 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 46 H 0.38 12.84 7.26 -74.05 -0.54 12.30 16 47 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 48 H 0.15 1.81 8.06 -2.91 -0.02 1.78 16 49 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 50 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 51 H 0.11 3.15 6.54 -2.91 -0.02 3.13 16 Total: -1.00 -67.88 380.17 0.77 -67.11 By element: Atomic # 1 Polarization: 33.02 SS G_CDS: 0.38 Total: 33.39 kcal Atomic # 6 Polarization: -48.85 SS G_CDS: 3.49 Total: -45.35 kcal Atomic # 7 Polarization: -76.71 SS G_CDS: -3.23 Total: -79.94 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -1.90 Total: -21.79 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -67.88 0.77 -67.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123887795.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.958 kcal (2) G-P(sol) polarization free energy of solvation -67.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds