Wall clock time and date at job start Tue Mar 31 2020 11:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00231 * 2 1 4 4 H 1.48502 * 109.46704 * 269.99893 * 3 2 1 5 5 H 1.48502 * 109.47240 * 29.99023 * 3 2 1 6 6 H 1.48495 * 109.47379 * 149.99803 * 3 2 1 7 7 C 1.37873 * 119.99558 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99897 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47002 * 180.02562 * 9 7 2 11 11 N 1.46907 * 109.47027 * 185.61271 * 10 9 7 12 12 C 1.39779 * 110.99380 * 296.28339 * 11 10 9 13 13 C 1.54441 * 111.75474 * 189.13720 * 12 11 10 14 14 C 1.50759 * 109.11156 * 282.57960 * 13 12 11 15 15 C 1.54265 * 112.56322 * 92.91397 * 14 13 12 16 16 C 1.53816 * 112.02669 * 318.61170 * 15 14 13 17 17 C 1.47619 * 111.00098 * 65.19334 * 11 10 9 18 18 H 1.09010 * 109.75180 * 269.94603 * 17 11 10 19 19 C 1.52996 * 109.75261 * 30.62298 * 17 11 10 20 20 C 1.53002 * 109.47440 * 183.43940 * 19 17 11 21 21 H 1.08996 * 109.47132 * 304.10690 * 20 19 17 22 22 O 1.42902 * 109.46883 * 64.10932 * 20 19 17 23 23 C 1.50699 * 109.47337 * 184.10791 * 20 19 17 24 24 C 1.38232 * 120.00121 * 279.72938 * 23 20 19 25 25 C 1.38238 * 119.99818 * 179.76355 * 24 23 20 26 26 C 1.38233 * 120.00179 * 0.50817 * 25 24 23 27 27 C 1.38237 * 119.99790 * 359.74425 * 26 25 24 28 28 C 1.38230 * 120.00184 * 0.02562 * 27 26 25 29 29 H 0.97005 * 119.99813 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.46939 * 60.00255 * 9 7 2 31 31 H 1.08997 * 109.47127 * 299.99794 * 9 7 2 32 32 H 1.08997 * 109.47395 * 65.61121 * 10 9 7 33 33 H 1.09005 * 109.47123 * 305.60569 * 10 9 7 34 34 H 1.09007 * 109.02169 * 68.55568 * 12 11 10 35 35 H 1.08994 * 108.96768 * 309.68475 * 12 11 10 36 36 H 1.08999 * 109.54000 * 42.49008 * 13 12 11 37 37 H 1.08999 * 109.54124 * 162.67076 * 13 12 11 38 38 H 1.09006 * 108.85133 * 213.85795 * 14 13 12 39 39 H 1.08995 * 108.85516 * 332.24022 * 14 13 12 40 40 H 1.08997 * 108.99079 * 197.92965 * 15 14 13 41 41 H 1.08996 * 108.91418 * 79.24212 * 15 14 13 42 42 H 1.09001 * 109.05287 * 198.45106 * 16 15 14 43 43 H 1.08994 * 108.99609 * 79.50605 * 16 15 14 44 44 H 1.08999 * 109.47362 * 303.44258 * 19 17 11 45 45 H 1.09005 * 109.46922 * 63.44346 * 19 17 11 46 46 H 0.96692 * 113.99851 * 64.27259 * 22 20 19 47 47 H 1.08001 * 119.99989 * 359.97438 * 24 23 20 48 48 H 1.08010 * 119.99791 * 180.22925 * 25 24 23 49 49 H 1.07995 * 120.00220 * 179.72664 * 26 25 24 50 50 H 1.08001 * 119.99765 * 179.97438 * 27 26 25 51 51 H 1.07998 * 120.00276 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6998 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0018 11 7 1.5157 -4.9301 -0.1336 12 6 0.6795 -5.1466 0.9653 13 6 0.0780 -6.5690 0.9554 14 6 -1.0480 -6.6219 -0.0457 15 6 -0.5806 -7.0946 -1.4378 16 6 0.7694 -6.4734 -1.8347 17 6 0.8470 -5.0180 -1.4467 18 1 -0.1579 -4.6014 -1.3770 19 6 1.6552 -4.2458 -2.4913 20 6 0.9134 -4.2688 -3.8293 21 1 0.7233 -5.3015 -4.1216 22 8 -0.3287 -3.5746 -3.6973 23 6 1.7555 -3.5957 -4.8823 24 6 1.7838 -2.2163 -4.9671 25 6 2.5602 -1.5988 -5.9299 26 6 3.3000 -2.3609 -6.8146 27 6 3.2676 -3.7405 -6.7331 28 6 2.4951 -4.3579 -5.7673 29 1 -0.4850 0.8401 -0.0004 30 1 0.6246 -2.5570 -0.8897 31 1 0.6239 -2.5567 0.8903 32 1 2.8031 -3.6621 0.9382 33 1 2.9367 -3.5498 -0.8333 34 1 -0.1311 -4.4180 0.9440 35 1 1.2551 -5.0106 1.8808 36 1 0.8479 -7.2885 0.6765 37 1 -0.3044 -6.8101 1.9472 38 1 -1.8143 -7.3045 0.3218 39 1 -1.4819 -5.6266 -0.1406 40 1 -1.3306 -6.8149 -2.1776 41 1 -0.4821 -8.1800 -1.4278 42 1 0.8981 -6.5613 -2.9135 43 1 1.5709 -7.0178 -1.3354 44 1 1.7810 -3.2139 -2.1634 45 1 2.6337 -4.7111 -2.6104 46 1 -0.2338 -2.6323 -3.5026 47 1 1.2020 -1.6209 -4.2790 48 1 2.5852 -0.5209 -5.9938 49 1 3.9031 -1.8786 -7.5695 50 1 3.8454 -4.3360 -7.4245 51 1 2.4694 -5.4357 -5.7039 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123887991.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:22 Heat of formation + Delta-G solvation = -34.355288 kcal Electronic energy + Delta-G solvation = -28422.426241 eV Core-core repulsion = 24899.849858 eV Total energy + Delta-G solvation = -3522.576383 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.03970 -39.04151 -36.61215 -34.91126 -32.99119 -32.75093 -31.32793 -30.74147 -29.48991 -28.39572 -25.86166 -25.09288 -23.66705 -22.59331 -22.28146 -21.61377 -20.75898 -19.42711 -18.56706 -17.33430 -16.49791 -15.83263 -15.81760 -15.47795 -15.09145 -14.78473 -14.53305 -14.35365 -14.16788 -13.76838 -13.31911 -13.26633 -13.20448 -13.00712 -12.81226 -12.37634 -12.21237 -11.90416 -11.65956 -11.59870 -11.32068 -11.12649 -11.02495 -10.82562 -10.81914 -10.67608 -10.65899 -10.35582 -10.12253 -9.96947 -9.87398 -9.75708 -9.73341 -9.62555 -9.11044 -8.82140 -8.59242 -8.38794 -7.30391 -6.04641 -4.07752 1.42452 1.49900 3.26643 3.34392 3.37658 3.85189 4.39774 4.52037 4.77277 4.80273 4.92143 5.06090 5.08769 5.13445 5.21286 5.24857 5.30448 5.41041 5.48403 5.52056 5.54540 5.64446 5.70512 5.73462 5.91400 5.98463 6.04009 6.06388 6.07018 6.14497 6.21533 6.29226 6.35268 6.39164 6.41723 6.47052 6.51030 6.53170 6.60321 6.62423 6.69809 6.76516 6.79693 6.87992 6.97245 7.08354 7.60676 7.66225 7.76033 7.93168 7.99961 8.17548 8.40835 8.99887 9.56706 11.05558 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.007091 B = 0.006949 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3947.726629 B = 4028.523223 C = 7216.975995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.886 3.114 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.054 0.946 9 C -0.008 4.008 10 C 0.055 3.945 11 N -0.554 5.554 12 C 0.075 3.925 13 C -0.116 4.116 14 C -0.121 4.121 15 C -0.113 4.113 16 C -0.113 4.113 17 C 0.107 3.893 18 H 0.058 0.942 19 C -0.156 4.156 20 C 0.148 3.852 21 H 0.102 0.898 22 O -0.556 6.556 23 C -0.108 4.108 24 C -0.105 4.105 25 C -0.116 4.116 26 C -0.126 4.126 27 C -0.123 4.123 28 C -0.114 4.114 29 H 0.260 0.740 30 H 0.022 0.978 31 H 0.014 0.986 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.028 0.972 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.052 0.948 42 H 0.057 0.943 43 H 0.070 0.930 44 H 0.101 0.899 45 H 0.070 0.930 46 H 0.380 0.620 47 H 0.126 0.874 48 H 0.121 0.879 49 H 0.118 0.882 50 H 0.118 0.882 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.334 -11.234 -9.190 14.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.714 3.286 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.072 0.928 9 C -0.046 4.046 10 C -0.071 4.071 11 N -0.277 5.277 12 C -0.055 4.055 13 C -0.154 4.154 14 C -0.158 4.158 15 C -0.151 4.151 16 C -0.151 4.151 17 C 0.000 4.000 18 H 0.076 0.924 19 C -0.193 4.193 20 C 0.089 3.911 21 H 0.120 0.880 22 O -0.363 6.363 23 C -0.108 4.108 24 C -0.123 4.123 25 C -0.134 4.134 26 C -0.144 4.144 27 C -0.141 4.141 28 C -0.132 4.132 29 H 0.070 0.930 30 H 0.041 0.959 31 H 0.033 0.967 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.046 0.954 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.120 0.880 45 H 0.089 0.911 46 H 0.229 0.771 47 H 0.144 0.856 48 H 0.139 0.861 49 H 0.136 0.864 50 H 0.136 0.864 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.241 -12.079 -9.275 15.393 hybrid contribution 0.182 2.266 0.177 2.280 sum 2.423 -9.813 -9.098 13.600 Atomic orbital electron populations 1.69968 1.05948 1.26523 1.50705 1.24980 0.94758 0.99030 0.95330 0.86685 0.79988 0.83787 0.78116 1.20686 1.21282 1.19900 1.21161 0.92935 0.90937 1.50684 0.92783 1.19708 0.94912 0.92558 0.97426 1.22415 0.97092 0.86904 1.00738 1.59291 1.31310 1.35742 1.01398 1.20874 0.95759 0.95046 0.93799 1.21490 0.97882 0.97917 0.98159 1.21422 0.97945 1.01494 0.94971 1.21876 0.97416 0.99247 0.96565 1.21536 0.97324 0.96317 0.99931 1.21003 0.96775 0.94179 0.88063 0.92427 1.22708 0.98875 1.04010 0.93746 1.20907 0.83074 0.95365 0.91792 0.88034 1.86530 1.29254 1.26660 1.93830 1.20665 0.98476 0.94344 0.97307 1.21041 0.98825 0.94183 0.98238 1.21146 0.96821 0.99968 0.95419 1.21118 0.99804 0.94080 0.99437 1.21070 0.99488 0.94797 0.98772 1.20952 0.97344 0.99563 0.95341 0.93044 0.95938 0.96739 0.92608 0.91475 0.95422 0.91914 0.91315 0.92316 0.93012 0.92102 0.92559 0.92956 0.92476 0.91180 0.88036 0.91098 0.77098 0.85582 0.86061 0.86418 0.86351 0.86220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -13.96 9.11 -34.44 -0.31 -14.28 16 8 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 9 C -0.01 -0.19 3.72 -27.88 -0.10 -0.30 16 10 C 0.05 1.11 4.66 -3.82 -0.02 1.10 16 11 N -0.55 -9.76 4.09 -231.97 -0.95 -10.71 16 12 C 0.08 1.29 4.46 -6.74 -0.03 1.26 16 13 C -0.12 -1.64 5.64 -27.10 -0.15 -1.79 16 14 C -0.12 -1.66 5.32 -27.19 -0.14 -1.80 16 15 C -0.11 -1.47 5.91 -25.64 -0.15 -1.62 16 16 C -0.11 -1.57 4.85 -27.40 -0.13 -1.70 16 17 C 0.11 1.76 1.05 -68.41 -0.07 1.69 16 18 H 0.06 1.10 6.00 -51.92 -0.31 0.79 16 19 C -0.16 -2.51 2.91 -26.73 -0.08 -2.59 16 20 C 0.15 2.17 3.08 -27.88 -0.09 2.08 16 21 H 0.10 1.37 6.04 -51.93 -0.31 1.06 16 22 O -0.56 -9.15 12.67 -35.23 -0.45 -9.59 16 23 C -0.11 -1.53 4.97 -104.62 -0.52 -2.05 16 24 C -0.10 -1.55 9.30 -39.58 -0.37 -1.92 16 25 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 26 C -0.13 -1.50 10.05 -39.58 -0.40 -1.90 16 27 C -0.12 -1.43 10.05 -39.58 -0.40 -1.82 16 28 C -0.11 -1.43 9.67 -39.58 -0.38 -1.81 16 29 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.02 0.57 5.90 -51.93 -0.31 0.27 16 31 H 0.01 0.39 6.97 -51.93 -0.36 0.03 16 32 H 0.06 1.15 7.97 -51.93 -0.41 0.74 16 33 H 0.07 1.35 6.00 -51.93 -0.31 1.04 16 34 H 0.03 0.55 6.23 -51.93 -0.32 0.23 16 35 H 0.06 1.08 7.88 -51.93 -0.41 0.67 16 36 H 0.07 0.95 7.11 -51.93 -0.37 0.58 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.96 6.59 -51.93 -0.34 0.62 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.72 5.77 -51.93 -0.30 0.42 16 43 H 0.07 0.99 7.26 -51.93 -0.38 0.61 16 44 H 0.10 1.95 4.74 -51.93 -0.25 1.70 16 45 H 0.07 1.11 8.02 -51.93 -0.42 0.69 16 46 H 0.38 6.08 7.35 45.56 0.33 6.42 16 47 H 0.13 1.92 6.71 -52.49 -0.35 1.57 16 48 H 0.12 1.44 8.06 -52.48 -0.42 1.01 16 49 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 50 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 51 H 0.12 1.25 8.04 -52.49 -0.42 0.83 16 LS Contribution 378.52 15.07 5.70 5.70 Total: -1.00 -28.98 378.52 -11.56 -40.55 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -7.74 Total: 10.82 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: -3.84 Total: -27.82 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: -0.21 Total: -35.73 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: -0.45 Total: -9.59 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -28.98 -11.56 -40.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123887991.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.191 kcal (2) G-P(sol) polarization free energy of solvation -28.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds