Wall clock time and date at job start Tue Mar 31 2020 11:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00231 * 2 1 4 4 H 1.48502 * 109.46704 * 269.99893 * 3 2 1 5 5 H 1.48502 * 109.47240 * 29.99023 * 3 2 1 6 6 H 1.48495 * 109.47379 * 149.99803 * 3 2 1 7 7 C 1.37873 * 119.99558 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99897 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47002 * 180.02562 * 9 7 2 11 11 N 1.46907 * 109.47027 * 185.61271 * 10 9 7 12 12 C 1.39779 * 110.99380 * 296.28339 * 11 10 9 13 13 C 1.54441 * 111.75474 * 189.13720 * 12 11 10 14 14 C 1.50759 * 109.11156 * 282.57960 * 13 12 11 15 15 C 1.54265 * 112.56322 * 92.91397 * 14 13 12 16 16 C 1.53816 * 112.02669 * 318.61170 * 15 14 13 17 17 C 1.47619 * 111.00098 * 65.19334 * 11 10 9 18 18 H 1.09010 * 109.75180 * 269.94603 * 17 11 10 19 19 C 1.52996 * 109.75261 * 30.62298 * 17 11 10 20 20 C 1.53002 * 109.47440 * 183.43940 * 19 17 11 21 21 H 1.08996 * 109.47132 * 304.10690 * 20 19 17 22 22 O 1.42902 * 109.46883 * 64.10932 * 20 19 17 23 23 C 1.50699 * 109.47337 * 184.10791 * 20 19 17 24 24 C 1.38232 * 120.00121 * 279.72938 * 23 20 19 25 25 C 1.38238 * 119.99818 * 179.76355 * 24 23 20 26 26 C 1.38233 * 120.00179 * 0.50817 * 25 24 23 27 27 C 1.38237 * 119.99790 * 359.74425 * 26 25 24 28 28 C 1.38230 * 120.00184 * 0.02562 * 27 26 25 29 29 H 0.97005 * 119.99813 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.46939 * 60.00255 * 9 7 2 31 31 H 1.08997 * 109.47127 * 299.99794 * 9 7 2 32 32 H 1.08997 * 109.47395 * 65.61121 * 10 9 7 33 33 H 1.09005 * 109.47123 * 305.60569 * 10 9 7 34 34 H 1.09007 * 109.02169 * 68.55568 * 12 11 10 35 35 H 1.08994 * 108.96768 * 309.68475 * 12 11 10 36 36 H 1.08999 * 109.54000 * 42.49008 * 13 12 11 37 37 H 1.08999 * 109.54124 * 162.67076 * 13 12 11 38 38 H 1.09006 * 108.85133 * 213.85795 * 14 13 12 39 39 H 1.08995 * 108.85516 * 332.24022 * 14 13 12 40 40 H 1.08997 * 108.99079 * 197.92965 * 15 14 13 41 41 H 1.08996 * 108.91418 * 79.24212 * 15 14 13 42 42 H 1.09001 * 109.05287 * 198.45106 * 16 15 14 43 43 H 1.08994 * 108.99609 * 79.50605 * 16 15 14 44 44 H 1.08999 * 109.47362 * 303.44258 * 19 17 11 45 45 H 1.09005 * 109.46922 * 63.44346 * 19 17 11 46 46 H 0.96692 * 113.99851 * 64.27259 * 22 20 19 47 47 H 1.08001 * 119.99989 * 359.97438 * 24 23 20 48 48 H 1.08010 * 119.99791 * 180.22925 * 25 24 23 49 49 H 1.07995 * 120.00220 * 179.72664 * 26 25 24 50 50 H 1.08001 * 119.99765 * 179.97438 * 27 26 25 51 51 H 1.07998 * 120.00276 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6998 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0018 11 7 1.5157 -4.9301 -0.1336 12 6 0.6795 -5.1466 0.9653 13 6 0.0780 -6.5690 0.9554 14 6 -1.0480 -6.6219 -0.0457 15 6 -0.5806 -7.0946 -1.4378 16 6 0.7694 -6.4734 -1.8347 17 6 0.8470 -5.0180 -1.4467 18 1 -0.1579 -4.6014 -1.3770 19 6 1.6552 -4.2458 -2.4913 20 6 0.9134 -4.2688 -3.8293 21 1 0.7233 -5.3015 -4.1216 22 8 -0.3287 -3.5746 -3.6973 23 6 1.7555 -3.5957 -4.8823 24 6 1.7838 -2.2163 -4.9671 25 6 2.5602 -1.5988 -5.9299 26 6 3.3000 -2.3609 -6.8146 27 6 3.2676 -3.7405 -6.7331 28 6 2.4951 -4.3579 -5.7673 29 1 -0.4850 0.8401 -0.0004 30 1 0.6246 -2.5570 -0.8897 31 1 0.6239 -2.5567 0.8903 32 1 2.8031 -3.6621 0.9382 33 1 2.9367 -3.5498 -0.8333 34 1 -0.1311 -4.4180 0.9440 35 1 1.2551 -5.0106 1.8808 36 1 0.8479 -7.2885 0.6765 37 1 -0.3044 -6.8101 1.9472 38 1 -1.8143 -7.3045 0.3218 39 1 -1.4819 -5.6266 -0.1406 40 1 -1.3306 -6.8149 -2.1776 41 1 -0.4821 -8.1800 -1.4278 42 1 0.8981 -6.5613 -2.9135 43 1 1.5709 -7.0178 -1.3354 44 1 1.7810 -3.2139 -2.1634 45 1 2.6337 -4.7111 -2.6104 46 1 -0.2338 -2.6323 -3.5026 47 1 1.2020 -1.6209 -4.2790 48 1 2.5852 -0.5209 -5.9938 49 1 3.9031 -1.8786 -7.5695 50 1 3.8454 -4.3360 -7.4245 51 1 2.4694 -5.4357 -5.7039 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123887991.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:21 Heat of formation + Delta-G solvation = -50.767499 kcal Electronic energy + Delta-G solvation = -28423.137928 eV Core-core repulsion = 24899.849858 eV Total energy + Delta-G solvation = -3523.288070 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.34053 -40.18425 -37.81860 -36.39278 -34.73458 -34.27974 -32.41232 -31.72955 -31.31737 -29.61124 -27.50640 -26.30079 -25.34546 -23.70982 -23.36276 -23.33119 -21.87694 -20.78788 -19.89329 -18.59939 -18.45528 -17.17492 -17.00908 -16.63684 -16.56652 -16.40259 -15.98536 -15.49098 -15.35988 -15.10297 -14.67200 -14.61216 -14.39239 -14.23971 -14.22389 -13.96761 -13.36273 -13.32841 -13.20329 -12.98290 -12.89221 -12.67580 -12.51830 -12.33579 -12.07690 -12.04930 -11.84040 -11.82313 -11.59556 -11.50160 -11.39893 -11.27440 -11.03040 -10.98948 -10.90077 -10.54603 -9.81765 -9.62759 -8.91825 -8.19554 -6.31293 0.41879 0.50264 1.36040 1.37106 1.47733 2.37808 2.82689 3.12323 3.13240 3.51465 3.64586 3.82461 3.95020 4.00347 4.08400 4.12695 4.20262 4.27873 4.29193 4.33222 4.38930 4.42593 4.54505 4.61055 4.65609 4.68884 4.75967 4.80993 4.89846 4.94857 5.02289 5.03256 5.05221 5.08092 5.15032 5.16603 5.22028 5.26282 5.36698 5.44934 5.51252 5.55750 5.56386 5.60367 5.62403 5.66110 5.70774 5.81412 6.09768 6.11680 6.42239 6.60210 6.67474 6.86113 7.37651 8.90178 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.007091 B = 0.006949 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3947.726629 B = 4028.523223 C = 7216.975995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.009 3.991 3 Si 0.953 3.047 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.534 4.534 8 H 0.056 0.944 9 C 0.010 3.990 10 C 0.068 3.932 11 N -0.541 5.541 12 C 0.073 3.927 13 C -0.105 4.105 14 C -0.121 4.121 15 C -0.111 4.111 16 C -0.108 4.108 17 C 0.111 3.889 18 H 0.024 0.976 19 C -0.146 4.146 20 C 0.154 3.846 21 H 0.121 0.879 22 O -0.570 6.570 23 C -0.123 4.123 24 C -0.131 4.131 25 C -0.130 4.130 26 C -0.125 4.125 27 C -0.120 4.120 28 C -0.116 4.116 29 H 0.261 0.739 30 H 0.004 0.996 31 H -0.023 1.023 32 H 0.053 0.947 33 H 0.072 0.928 34 H -0.011 1.011 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.028 0.972 40 H 0.052 0.948 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.081 0.919 46 H 0.376 0.624 47 H 0.103 0.897 48 H 0.128 0.872 49 H 0.146 0.854 50 H 0.152 0.848 51 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.217 -13.301 -10.832 17.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.189 4.189 3 Si 0.778 3.222 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.573 4.573 8 H 0.075 0.925 9 C -0.029 4.029 10 C -0.059 4.059 11 N -0.264 5.264 12 C -0.057 4.057 13 C -0.142 4.142 14 C -0.159 4.159 15 C -0.149 4.149 16 C -0.146 4.146 17 C 0.004 3.996 18 H 0.042 0.958 19 C -0.183 4.183 20 C 0.095 3.905 21 H 0.139 0.861 22 O -0.377 6.377 23 C -0.123 4.123 24 C -0.149 4.149 25 C -0.148 4.148 26 C -0.143 4.143 27 C -0.138 4.138 28 C -0.134 4.134 29 H 0.070 0.930 30 H 0.022 0.978 31 H -0.004 1.004 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.008 0.992 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.046 0.954 40 H 0.071 0.929 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.082 0.918 45 H 0.100 0.900 46 H 0.225 0.775 47 H 0.122 0.878 48 H 0.146 0.854 49 H 0.163 0.837 50 H 0.170 0.830 51 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.130 -14.163 -10.920 18.355 hybrid contribution -0.423 2.925 0.674 3.031 sum 3.707 -11.238 -10.246 15.653 Atomic orbital electron populations 1.70108 1.07616 1.27446 1.51657 1.25820 0.95540 1.02743 0.94815 0.85622 0.78790 0.79195 0.78545 1.19643 1.21067 1.18981 1.21536 0.93236 0.92157 1.50379 0.92529 1.19492 0.94861 0.93883 0.94626 1.22172 0.96244 0.86753 1.00705 1.59444 1.31347 1.33326 1.02263 1.20945 0.94461 0.96688 0.93582 1.21421 0.98106 0.95288 0.99421 1.21424 0.98322 1.00294 0.95819 1.21876 0.96586 1.00741 0.95658 1.21491 0.98241 0.93725 1.01144 1.21034 0.94793 0.96356 0.87461 0.95841 1.22557 0.99577 1.01640 0.94564 1.20955 0.82309 0.96064 0.91178 0.86145 1.86496 1.30793 1.26549 1.93865 1.20643 0.99462 0.94165 0.98051 1.21039 1.00010 0.94798 0.99077 1.21342 0.97141 1.00710 0.95652 1.21486 0.99125 0.94535 0.99183 1.21495 0.98802 0.94940 0.98563 1.21275 0.96612 1.00787 0.94762 0.92994 0.97826 1.00447 0.92843 0.90973 0.99246 0.92211 0.89929 0.90581 0.90783 0.95351 0.92874 0.90169 0.90652 0.90511 0.91793 0.90019 0.77528 0.87847 0.85416 0.83651 0.83013 0.83741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.10 13.29 21.45 0.28 -55.82 16 2 C 0.01 0.52 5.46 84.65 0.46 0.98 16 3 Si 0.95 44.18 29.54 68.60 2.03 46.21 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.53 -30.03 9.11 25.60 0.23 -29.80 16 8 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 9 C 0.01 0.51 3.72 29.85 0.11 0.62 16 10 C 0.07 2.90 4.66 86.30 0.40 3.30 16 11 N -0.54 -19.53 4.09 -887.83 -3.63 -23.16 16 12 C 0.07 2.62 4.46 88.08 0.39 3.01 16 13 C -0.10 -2.82 5.64 30.36 0.17 -2.65 16 14 C -0.12 -3.22 5.32 30.30 0.16 -3.06 16 15 C -0.11 -2.64 5.91 31.30 0.19 -2.46 16 16 C -0.11 -2.80 4.85 30.16 0.15 -2.65 16 17 C 0.11 3.72 1.05 44.07 0.05 3.76 16 18 H 0.02 0.96 6.00 -2.38 -0.01 0.95 16 19 C -0.15 -4.81 2.91 30.59 0.09 -4.72 16 20 C 0.15 4.55 3.08 29.85 0.09 4.64 16 21 H 0.12 3.06 6.04 -2.39 -0.01 3.05 16 22 O -0.57 -20.00 12.67 -148.98 -1.89 -21.89 16 23 C -0.12 -3.47 4.97 -19.87 -0.10 -3.57 16 24 C -0.13 -4.04 9.30 22.27 0.21 -3.83 16 25 C -0.13 -3.46 10.05 22.27 0.22 -3.23 16 26 C -0.13 -2.69 10.05 22.27 0.22 -2.47 16 27 C -0.12 -2.39 10.05 22.27 0.22 -2.17 16 28 C -0.12 -2.63 9.67 22.27 0.22 -2.42 16 29 H 0.26 14.97 8.31 -92.70 -0.77 14.19 16 30 H 0.00 0.20 5.90 -2.39 -0.01 0.18 16 31 H -0.02 -1.35 6.97 -2.39 -0.02 -1.37 16 32 H 0.05 2.27 7.97 -2.39 -0.02 2.25 16 33 H 0.07 2.99 6.00 -2.38 -0.01 2.97 16 34 H -0.01 -0.46 6.23 -2.38 -0.01 -0.47 16 35 H 0.06 2.13 7.88 -2.39 -0.02 2.11 16 36 H 0.08 2.05 7.11 -2.39 -0.02 2.03 16 37 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 39 H 0.03 0.93 6.59 -2.39 -0.02 0.91 16 40 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.08 1.69 5.77 -2.39 -0.01 1.67 16 43 H 0.08 1.93 7.26 -2.39 -0.02 1.91 16 44 H 0.06 2.62 4.74 -2.39 -0.01 2.61 16 45 H 0.08 2.49 8.02 -2.38 -0.02 2.48 16 46 H 0.38 13.55 7.35 -74.06 -0.54 13.01 16 47 H 0.10 3.52 6.71 -2.91 -0.02 3.51 16 48 H 0.13 3.06 8.06 -2.91 -0.02 3.04 16 49 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 50 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 51 H 0.14 2.48 8.04 -2.91 -0.02 2.46 16 Total: -1.00 -65.94 378.52 0.65 -65.29 By element: Atomic # 1 Polarization: 35.71 SS G_CDS: 0.37 Total: 36.08 kcal Atomic # 6 Polarization: -50.21 SS G_CDS: 3.49 Total: -46.72 kcal Atomic # 7 Polarization: -75.63 SS G_CDS: -3.35 Total: -78.97 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -1.89 Total: -21.89 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -65.94 0.65 -65.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123887991.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.526 kcal (2) G-P(sol) polarization free energy of solvation -65.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds