Wall clock time and date at job start Tue Mar 31 2020 12:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52999 * 109.46623 * 240.00064 * 2 1 3 5 5 C 1.50700 * 109.47526 * 294.99769 * 4 2 1 6 6 C 1.38234 * 119.99959 * 269.72856 * 5 4 2 7 7 C 1.38234 * 119.99469 * 179.76242 * 6 5 4 8 8 C 1.38226 * 120.00367 * 0.48869 * 7 6 5 9 9 C 1.50703 * 120.00334 * 179.76438 * 8 7 6 10 10 C 1.53002 * 109.47206 * 270.02387 * 9 8 7 11 11 C 1.53000 * 109.47013 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.47280 * 180.02562 * 11 10 9 13 13 O 1.21276 * 119.99835 * 359.97438 * 12 11 10 14 14 N 1.34778 * 120.00163 * 180.02562 * 12 11 10 15 15 C 1.46498 * 119.99831 * 359.97438 * 14 12 11 16 16 C 1.46500 * 119.99756 * 179.97438 * 14 12 11 17 17 C 1.50704 * 109.46786 * 89.99925 * 16 14 12 18 18 H 1.07999 * 120.00295 * 359.97438 * 17 16 14 19 19 C 1.37879 * 119.99800 * 179.97438 * 17 16 14 20 20 N 1.31520 * 119.99965 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00271 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47413 * 89.99967 * 21 19 17 23 23 H 1.48496 * 109.47384 * 210.00546 * 21 19 17 24 24 H 1.48510 * 109.46922 * 329.99864 * 21 19 17 25 25 C 1.38234 * 120.00261 * 359.78894 * 8 7 6 26 26 C 1.38236 * 119.99678 * 90.00074 * 5 4 2 27 27 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 28 28 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 29 29 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 31 31 H 1.09001 * 109.46832 * 60.00321 * 3 2 1 32 32 H 1.09002 * 109.47153 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.46952 * 300.00302 * 3 2 1 34 34 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 35 35 H 1.09007 * 109.46669 * 175.00116 * 4 2 1 36 36 H 1.08000 * 120.00234 * 359.97438 * 6 5 4 37 37 H 1.08007 * 119.99845 * 180.25319 * 7 6 5 38 38 H 1.09001 * 109.47191 * 30.02471 * 9 8 7 39 39 H 1.08997 * 109.47274 * 150.02379 * 9 8 7 40 40 H 1.08997 * 109.46993 * 299.99381 * 10 9 8 41 41 H 1.08997 * 109.47011 * 59.99831 * 10 9 8 42 42 H 1.09006 * 109.47158 * 300.00470 * 11 10 9 43 43 H 1.09006 * 109.46871 * 59.99703 * 11 10 9 44 44 H 1.08996 * 109.47329 * 90.00207 * 15 14 12 45 45 H 1.09000 * 109.47293 * 210.00033 * 15 14 12 46 46 H 1.09001 * 109.47514 * 330.00346 * 15 14 12 47 47 H 1.08999 * 109.46820 * 209.99242 * 16 14 12 48 48 H 1.08993 * 109.47187 * 330.00173 * 16 14 12 49 49 H 0.96992 * 120.00028 * 179.97438 * 20 19 17 50 50 H 1.08000 * 120.00916 * 179.97438 * 25 8 7 51 51 H 1.08004 * 120.00257 * 0.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6413 -2.1733 -1.1890 6 6 2.4840 -3.0975 -0.6002 7 6 2.1160 -4.4287 -0.5406 8 6 0.9101 -4.8372 -1.0786 9 6 0.5113 -6.2893 -1.0183 10 6 1.0213 -7.0105 -2.2676 11 6 0.6170 -8.4849 -2.2060 12 6 1.1198 -9.1955 -3.4362 13 8 1.7400 -8.5829 -4.2793 14 7 0.8794 -10.5115 -3.5998 15 6 0.1298 -11.2513 -2.5815 16 6 1.3678 -11.2021 -4.7960 17 6 2.7493 -11.7442 -4.5341 18 1 3.2170 -11.5894 -3.5730 19 6 3.4163 -12.4378 -5.5216 20 7 2.8470 -12.6258 -6.6922 21 14 5.1284 -13.1104 -5.1969 22 1 5.0239 -14.4858 -4.6470 23 1 5.8969 -13.1422 -6.4671 24 1 5.8257 -12.2377 -4.2183 25 6 0.0700 -3.9140 -1.6725 26 6 0.4355 -2.5819 -1.7274 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9562 0.8900 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6053 -0.2617 -2.1370 35 1 3.1263 -0.6444 -1.2952 36 1 3.4282 -2.7791 -0.1838 37 1 2.7725 -5.1501 -0.0770 38 1 0.9459 -6.7489 -0.1306 39 1 -0.5749 -6.3662 -0.9724 40 1 0.5866 -6.5510 -3.1553 41 1 2.1076 -6.9336 -2.3135 42 1 1.0519 -8.9441 -1.3182 43 1 -0.4693 -8.5621 -2.1598 44 1 -0.9343 -11.2140 -2.8150 45 1 0.4625 -12.2892 -2.5679 46 1 0.3032 -10.8012 -1.6041 47 1 0.6953 -12.0242 -5.0408 48 1 1.4044 -10.5017 -5.6303 49 1 3.3164 -13.1134 -7.3870 50 1 -0.8721 -4.2331 -2.0932 51 1 -0.2208 -1.8606 -2.1917 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132912389.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:05 Heat of formation + Delta-G solvation = -69.058768 kcal Electronic energy + Delta-G solvation = -25431.695828 eV Core-core repulsion = 21907.614589 eV Total energy + Delta-G solvation = -3524.081238 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.75654 -40.41831 -37.52235 -36.61449 -35.48864 -34.70484 -32.46282 -31.78052 -30.17425 -28.80794 -27.98012 -27.28276 -26.29889 -24.69279 -23.57390 -22.81719 -21.52274 -20.78656 -19.89769 -18.71099 -17.78665 -17.19490 -17.00205 -16.86206 -16.36428 -16.23019 -15.85756 -15.51007 -15.19162 -15.04773 -14.52333 -14.31324 -14.27309 -14.13127 -13.94227 -13.67194 -13.43985 -13.33180 -13.16733 -13.05151 -12.98155 -12.86405 -12.68951 -12.58124 -12.48974 -12.34315 -12.20513 -12.01444 -11.89019 -11.71435 -11.66931 -11.51926 -11.47921 -11.42223 -10.65690 -10.55741 -9.74844 -9.39789 -9.30827 -8.23687 -6.39038 0.47717 0.56039 1.34608 1.38081 1.48366 1.89122 2.32905 2.49365 2.87989 3.05196 3.78445 3.80269 3.89506 3.93393 4.03907 4.10224 4.19388 4.21464 4.34721 4.40283 4.42007 4.51690 4.64815 4.66679 4.71363 4.74900 4.77641 4.79215 4.84001 4.88540 4.90517 4.98639 4.98876 5.05084 5.07238 5.08757 5.16594 5.20771 5.23518 5.30178 5.35944 5.44533 5.45181 5.48617 5.56049 5.59515 5.78861 5.81359 5.85377 6.05340 6.19796 6.69039 6.82710 7.27428 7.52885 8.83250 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.022246 B = 0.001967 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.345736 B =14230.416134 C =14868.303016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.088 4.088 3 C -0.146 4.146 4 C -0.074 4.074 5 C -0.092 4.092 6 C -0.128 4.128 7 C -0.129 4.129 8 C -0.096 4.096 9 C -0.069 4.069 10 C -0.090 4.090 11 C -0.122 4.122 12 C 0.488 3.512 13 O -0.605 6.605 14 N -0.614 5.614 15 C 0.078 3.922 16 C 0.257 3.743 17 C -0.544 4.544 18 H 0.053 0.947 19 C 0.004 3.996 20 N -0.929 5.929 21 Si 0.970 3.030 22 H -0.261 1.261 23 H -0.281 1.281 24 H -0.273 1.273 25 C -0.127 4.127 26 C -0.122 4.122 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.047 0.953 41 H 0.042 0.958 42 H 0.116 0.884 43 H 0.121 0.879 44 H 0.070 0.930 45 H 0.063 0.937 46 H 0.098 0.902 47 H 0.022 0.978 48 H -0.006 1.006 49 H 0.267 0.733 50 H 0.130 0.870 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.670 22.500 19.038 30.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.107 4.107 3 C -0.203 4.203 4 C -0.111 4.111 5 C -0.092 4.092 6 C -0.146 4.146 7 C -0.147 4.147 8 C -0.096 4.096 9 C -0.106 4.106 10 C -0.128 4.128 11 C -0.161 4.161 12 C 0.278 3.722 13 O -0.487 6.487 14 N -0.345 5.345 15 C -0.064 4.064 16 C 0.135 3.865 17 C -0.582 4.582 18 H 0.071 0.929 19 C -0.194 4.194 20 N -0.569 5.569 21 Si 0.794 3.206 22 H -0.186 1.186 23 H -0.206 1.206 24 H -0.198 1.198 25 C -0.145 4.145 26 C -0.139 4.139 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.134 0.866 43 H 0.140 0.860 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.117 0.883 47 H 0.040 0.960 48 H 0.012 0.988 49 H 0.076 0.924 50 H 0.148 0.852 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.354 22.702 18.438 30.156 hybrid contribution 1.007 -0.706 -0.677 1.404 sum -6.347 21.995 17.761 28.975 Atomic orbital electron populations 1.21905 0.95093 1.01701 1.01932 1.21049 0.96185 0.96253 0.97189 1.21835 1.01133 0.95137 1.02186 1.20697 1.01344 0.90170 0.98905 1.20066 0.94640 0.96317 0.98171 1.21232 1.00090 0.93069 1.00236 1.21265 0.96480 0.96431 1.00476 1.20070 0.94981 0.96179 0.98370 1.20582 1.02377 0.90161 0.97521 1.21196 1.00394 0.93143 0.98050 1.21725 1.04105 0.95508 0.94804 1.21676 0.79350 0.82006 0.89213 1.90629 1.43593 1.67095 1.47380 1.48247 1.54333 1.09087 1.22872 1.21946 0.95776 0.97369 0.91292 1.18736 0.93728 0.90688 0.83326 1.21720 1.02206 1.34783 0.99499 0.92871 1.25913 1.02593 0.96377 0.94550 1.70058 1.39954 1.42016 1.04838 0.85382 0.78563 0.78986 0.77675 1.18587 1.20608 1.19816 1.21285 1.00344 0.93350 0.99555 1.21219 0.96701 0.95931 1.00097 0.92461 0.92325 0.93086 0.91798 0.92190 0.92426 0.92344 0.90695 0.90774 0.85183 0.85535 0.89429 0.89036 0.93369 0.93899 0.86620 0.86049 0.91108 0.91848 0.88335 0.95953 0.98759 0.92396 0.85171 0.85039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.76 71.98 0.63 -1.19 16 2 C -0.09 -1.09 2.91 -10.79 -0.03 -1.12 16 3 C -0.15 -1.45 9.19 71.98 0.66 -0.78 16 4 C -0.07 -1.05 4.84 29.85 0.14 -0.91 16 5 C -0.09 -1.71 4.71 -19.87 -0.09 -1.81 16 6 C -0.13 -2.55 9.70 22.27 0.22 -2.33 16 7 C -0.13 -2.75 9.70 22.27 0.22 -2.54 16 8 C -0.10 -2.07 5.13 -19.87 -0.10 -2.17 16 9 C -0.07 -1.31 5.34 29.85 0.16 -1.16 16 10 C -0.09 -2.43 4.49 30.60 0.14 -2.30 16 11 C -0.12 -3.22 4.25 29.85 0.13 -3.10 16 12 C 0.49 20.65 7.67 87.66 0.67 21.32 16 13 O -0.60 -32.72 15.56 -3.02 -0.05 -32.77 16 14 N -0.61 -26.57 2.86 -851.15 -2.43 -29.01 16 15 C 0.08 2.29 10.24 127.77 1.31 3.60 16 16 C 0.26 14.33 5.16 85.63 0.44 14.78 16 17 C -0.54 -32.21 9.39 25.60 0.24 -31.97 16 18 H 0.05 3.11 7.81 -2.91 -0.02 3.08 16 19 C 0.00 0.26 5.46 84.65 0.46 0.73 16 20 N -0.93 -57.42 13.29 21.45 0.28 -57.13 16 21 Si 0.97 45.77 29.54 68.60 2.03 47.80 16 22 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 23 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 24 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 25 C -0.13 -2.62 9.70 22.27 0.22 -2.40 16 26 C -0.12 -2.32 7.96 22.27 0.18 -2.14 16 27 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.05 0.73 6.26 -2.39 -0.01 0.72 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.07 1.00 8.09 -2.39 -0.02 0.98 16 35 H 0.07 1.00 8.08 -2.38 -0.02 0.98 16 36 H 0.13 2.13 8.06 -2.91 -0.02 2.11 16 37 H 0.13 2.43 8.06 -2.91 -0.02 2.41 16 38 H 0.09 1.39 8.09 -2.39 -0.02 1.37 16 39 H 0.09 1.38 8.09 -2.39 -0.02 1.36 16 40 H 0.05 1.50 8.10 -2.39 -0.02 1.48 16 41 H 0.04 1.39 8.10 -2.39 -0.02 1.37 16 42 H 0.12 2.44 7.40 -2.38 -0.02 2.42 16 43 H 0.12 2.38 8.11 -2.38 -0.02 2.36 16 44 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.06 1.98 8.07 -2.39 -0.02 1.96 16 46 H 0.10 2.08 6.44 -2.39 -0.02 2.07 16 47 H 0.02 1.26 8.07 -2.39 -0.02 1.24 16 48 H -0.01 -0.37 7.42 -2.39 -0.02 -0.39 16 49 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 50 H 0.13 2.30 8.06 -2.91 -0.02 2.28 16 51 H 0.13 2.04 8.04 -2.91 -0.02 2.02 16 Total: -1.00 -78.11 412.83 6.28 -71.83 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.86 Total: 14.76 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: 5.58 Total: -15.49 kcal Atomic # 7 Polarization: -83.99 SS G_CDS: -2.15 Total: -86.14 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -0.05 Total: -32.77 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -78.11 6.28 -71.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132912389.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.776 kcal (2) G-P(sol) polarization free energy of solvation -78.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds