Wall clock time and date at job start Tue Mar 31 2020 11:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99987 * 2 1 4 4 H 1.48508 * 109.47237 * 240.00026 * 3 2 1 5 5 H 1.48501 * 109.47343 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47737 * 119.99780 * 3 2 1 7 7 C 1.37872 * 120.00345 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00721 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99837 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47173 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46860 * 180.02562 * 10 9 7 12 12 N 1.46904 * 109.46581 * 184.92022 * 11 10 9 13 13 C 1.46908 * 110.99649 * 187.33124 * 12 11 10 14 14 C 1.50700 * 109.46875 * 169.34415 * 13 12 11 15 15 C 1.38237 * 120.00138 * 275.26130 * 14 13 12 16 16 C 1.38238 * 119.99830 * 179.76614 * 15 14 13 17 17 C 1.38243 * 119.99726 * 0.51143 * 16 15 14 18 18 C 1.38229 * 119.99732 * 359.73944 * 17 16 15 19 19 C 1.38231 * 120.00928 * 0.02562 * 18 17 16 20 20 C 1.46895 * 110.99959 * 63.38609 * 12 11 10 21 21 C 1.52999 * 109.47713 * 46.82503 * 20 12 11 22 22 O 1.42900 * 110.43044 * 296.01254 * 21 20 12 23 23 C 1.54890 * 110.48552 * 58.55055 * 21 20 12 24 24 C 1.55235 * 102.58679 * 156.68065 * 23 21 20 25 25 C 1.54267 * 104.23090 * 322.08443 * 24 23 21 26 26 C 1.53881 * 106.59887 * 23.61355 * 25 24 23 27 27 H 0.97001 * 119.99854 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47048 * 60.00385 * 9 7 2 29 29 H 1.09002 * 109.47603 * 300.00497 * 9 7 2 30 30 H 1.08995 * 109.47012 * 60.00732 * 10 9 7 31 31 H 1.08998 * 109.47047 * 300.00013 * 10 9 7 32 32 H 1.08995 * 109.46949 * 64.92586 * 11 10 9 33 33 H 1.08997 * 109.47542 * 304.91968 * 11 10 9 34 34 H 1.08999 * 109.47446 * 289.35307 * 13 12 11 35 35 H 1.09004 * 109.46603 * 49.35120 * 13 12 11 36 36 H 1.07998 * 119.99987 * 359.97438 * 15 14 13 37 37 H 1.07993 * 120.00008 * 180.22457 * 16 15 14 38 38 H 1.07999 * 119.99725 * 179.72609 * 17 16 15 39 39 H 1.08007 * 119.99748 * 179.97438 * 18 17 16 40 40 H 1.08000 * 120.00613 * 179.97438 * 19 18 17 41 41 H 1.09005 * 109.46824 * 286.82404 * 20 12 11 42 42 H 1.09004 * 109.47244 * 166.83094 * 20 12 11 43 43 H 0.96705 * 114.00161 * 179.97438 * 22 21 20 44 44 H 1.09001 * 110.75745 * 275.07158 * 23 21 20 45 45 H 1.08997 * 110.75373 * 38.44372 * 23 21 20 46 46 H 1.09000 * 110.46952 * 203.39936 * 24 23 21 47 47 H 1.08999 * 110.47004 * 80.77423 * 24 23 21 48 48 H 1.08996 * 110.03537 * 264.32554 * 25 24 23 49 49 H 1.09008 * 110.03183 * 142.89706 * 25 24 23 50 50 H 1.09002 * 110.02778 * 240.71653 * 26 25 24 51 51 H 1.09001 * 110.03208 * 119.28553 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 6 1.4803 -4.9871 0.0020 12 7 2.4307 -6.1010 0.1205 13 6 1.7517 -7.3926 -0.0496 14 6 2.7794 -8.4866 -0.1837 15 6 3.3386 -8.7622 -1.4175 16 6 4.2849 -9.7625 -1.5396 17 6 4.6643 -10.4941 -0.4297 18 6 4.1013 -10.2218 0.8030 19 6 3.1586 -9.2184 0.9261 20 6 3.1470 -6.0478 1.4019 21 6 2.1480 -5.8054 2.5351 22 8 1.5250 -4.5280 2.3862 23 6 1.0815 -6.9282 2.5669 24 6 0.5825 -6.8793 4.0361 25 6 1.8547 -6.5901 4.8593 26 6 2.8501 -5.9073 3.9049 27 1 -0.4850 0.8401 -0.0004 28 1 0.6242 -2.5575 -0.8880 29 1 0.6247 -2.5563 0.8919 30 1 2.8726 -3.6039 0.8910 31 1 2.8713 -3.6047 -0.8890 32 1 0.9211 -5.0841 -0.9285 33 1 0.7896 -5.0075 0.8449 34 1 1.1224 -7.5895 0.8183 35 1 1.1337 -7.3626 -0.9471 36 1 3.0385 -8.1939 -2.2855 37 1 4.7243 -9.9754 -2.5028 38 1 5.4004 -11.2786 -0.5259 39 1 4.3974 -10.7937 1.6701 40 1 2.7185 -9.0060 1.8892 41 1 3.8737 -5.2357 1.3784 42 1 3.6636 -6.9929 1.5689 43 1 0.8811 -4.3214 3.0775 44 1 0.2697 -6.7097 1.8731 45 1 1.5320 -7.8953 2.3438 46 1 0.1514 -7.8380 4.3244 47 1 -0.1455 -6.0783 4.1650 48 1 2.2768 -7.5225 5.2343 49 1 1.6186 -5.9256 5.6905 50 1 3.7551 -6.5083 3.8167 51 1 3.0970 -4.9114 4.2729 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134356612.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:48 Heat of formation + Delta-G solvation = -13.126245 kcal Electronic energy + Delta-G solvation = -28140.955815 eV Core-core repulsion = 24619.299992 eV Total energy + Delta-G solvation = -3521.655822 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.53826 -38.97892 -36.43327 -34.51571 -33.51997 -31.97439 -31.02231 -30.70367 -29.35937 -28.57407 -26.61413 -25.71243 -23.79449 -22.68272 -21.86977 -20.82107 -20.40847 -20.09891 -19.25196 -17.09253 -16.79103 -16.18208 -15.90330 -15.40082 -15.31013 -15.02423 -14.78608 -14.37500 -14.29312 -13.87791 -13.70619 -13.36053 -13.04888 -12.91824 -12.57755 -12.34252 -12.21752 -11.79348 -11.72149 -11.50600 -11.37879 -11.25298 -11.17108 -11.04489 -10.97272 -10.87242 -10.69833 -10.53842 -10.41766 -10.35446 -10.16724 -9.72647 -9.12974 -9.06815 -8.94930 -8.88677 -8.69963 -8.17456 -7.60148 -5.85447 -3.85125 1.30535 1.36537 3.41427 3.44919 3.48365 3.70412 4.26986 4.40345 4.51999 4.56546 4.63489 4.71777 4.80313 4.86721 4.95556 5.01066 5.15252 5.25941 5.35439 5.38940 5.41778 5.49580 5.50409 5.55067 5.61282 5.68122 5.74075 5.75585 5.78789 5.89210 5.96300 6.01686 6.03219 6.10081 6.19164 6.22590 6.31234 6.41867 6.43803 6.46189 6.65150 6.79273 6.96045 7.06536 7.11313 7.40139 7.61810 7.66402 7.89966 7.99844 8.14802 8.22474 8.65001 9.22858 9.77181 11.26062 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013878 B = 0.003646 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.149773 B = 7677.316382 C = 8965.788899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.887 3.113 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.509 4.509 8 H 0.051 0.949 9 C 0.031 3.969 10 C -0.087 4.087 11 C 0.044 3.956 12 N -0.525 5.525 13 C 0.054 3.946 14 C -0.065 4.065 15 C -0.099 4.099 16 C -0.121 4.121 17 C -0.128 4.128 18 C -0.123 4.123 19 C -0.123 4.123 20 C 0.070 3.930 21 C 0.097 3.903 22 O -0.513 6.513 23 C -0.163 4.163 24 C -0.131 4.131 25 C -0.125 4.125 26 C -0.152 4.152 27 H 0.258 0.742 28 H 0.005 0.995 29 H 0.018 0.982 30 H 0.056 0.944 31 H 0.034 0.966 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.361 0.639 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.064 0.936 47 H 0.067 0.933 48 H 0.061 0.939 49 H 0.063 0.937 50 H 0.069 0.931 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.407 -22.620 6.307 23.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.145 4.145 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.548 4.548 8 H 0.069 0.931 9 C -0.006 4.006 10 C -0.125 4.125 11 C -0.081 4.081 12 N -0.247 5.247 13 C -0.073 4.073 14 C -0.065 4.065 15 C -0.117 4.117 16 C -0.139 4.139 17 C -0.146 4.146 18 C -0.141 4.141 19 C -0.142 4.142 20 C -0.059 4.059 21 C 0.054 3.946 22 O -0.318 6.318 23 C -0.200 4.200 24 C -0.168 4.168 25 C -0.163 4.163 26 C -0.191 4.191 27 H 0.067 0.933 28 H 0.023 0.977 29 H 0.037 0.963 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.209 0.791 44 H 0.099 0.901 45 H 0.099 0.901 46 H 0.083 0.917 47 H 0.086 0.914 48 H 0.079 0.921 49 H 0.082 0.918 50 H 0.088 0.912 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.978 -22.406 5.376 23.574 hybrid contribution -0.376 0.830 1.142 1.461 sum 4.602 -21.576 6.518 23.004 Atomic orbital electron populations 1.69961 1.05947 1.26255 1.51812 1.24994 0.94784 0.98944 0.95825 0.86741 0.79613 0.83583 0.78510 1.20390 1.21477 1.20413 1.21280 0.92889 0.91355 1.49228 0.93117 1.18959 0.93990 0.91121 0.96545 1.21444 0.98808 0.92604 0.99674 1.22779 0.94526 0.90203 1.00620 1.62293 1.29758 1.01488 1.31200 1.21767 0.94264 0.88414 1.02876 1.19901 0.97564 0.95884 0.93199 1.21096 0.96259 0.96788 0.97572 1.21160 0.97859 0.96346 0.98581 1.21091 1.00340 1.00112 0.93061 1.21070 0.97469 0.98103 0.97454 1.21139 0.98392 0.96427 0.98207 1.22306 0.95638 1.02104 0.85802 1.22792 0.92577 0.84250 0.94966 1.87187 1.59493 1.33827 1.51298 1.23760 0.99682 0.99892 0.96623 1.22500 0.97534 1.01645 0.95135 1.22133 0.95619 1.00338 0.98190 1.22883 0.98836 1.01777 0.95575 0.93274 0.97693 0.96334 0.92535 0.94718 0.93311 0.90733 0.91193 0.90514 0.85919 0.86326 0.86525 0.86476 0.86305 0.89874 0.90239 0.79137 0.90129 0.90077 0.91711 0.91404 0.92059 0.91833 0.91231 0.90564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.73 13.29 55.43 0.74 -27.00 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.40 29.54 -169.99 -5.02 17.38 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.51 -15.00 9.11 -34.44 -0.31 -15.31 16 8 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 9 C 0.03 0.84 4.94 -27.88 -0.14 0.70 16 10 C -0.09 -1.93 4.26 -26.73 -0.11 -2.04 16 11 C 0.04 0.80 4.30 -3.82 -0.02 0.78 16 12 N -0.53 -7.96 4.72 -236.06 -1.11 -9.07 16 13 C 0.05 0.68 4.66 -4.97 -0.02 0.66 16 14 C -0.06 -0.77 4.80 -104.62 -0.50 -1.27 16 15 C -0.10 -1.16 9.72 -39.58 -0.38 -1.54 16 16 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 17 C -0.13 -1.23 10.05 -39.58 -0.40 -1.62 16 18 C -0.12 -1.19 10.05 -39.59 -0.40 -1.59 16 19 C -0.12 -1.30 7.95 -39.58 -0.31 -1.61 16 20 C 0.07 0.98 4.35 -3.83 -0.02 0.96 16 21 C 0.10 1.20 0.76 -88.96 -0.07 1.14 16 22 O -0.51 -7.94 7.15 -35.23 -0.25 -8.19 16 23 C -0.16 -1.71 3.74 -24.55 -0.09 -1.81 16 24 C -0.13 -1.20 6.53 -24.88 -0.16 -1.36 16 25 C -0.13 -1.14 6.80 -25.61 -0.17 -1.31 16 26 C -0.15 -1.64 6.09 -25.61 -0.16 -1.80 16 27 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.00 0.14 8.14 -51.93 -0.42 -0.29 16 29 H 0.02 0.51 7.80 -51.93 -0.41 0.11 16 30 H 0.06 1.26 5.48 -51.93 -0.28 0.98 16 31 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.91 7.98 -51.93 -0.41 0.49 16 33 H 0.08 1.32 3.98 -47.72 -0.19 1.13 16 34 H 0.07 0.81 2.99 -51.93 -0.16 0.66 16 35 H 0.08 0.99 7.93 -51.93 -0.41 0.57 16 36 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 37 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 39 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 40 H 0.12 1.12 5.51 -52.49 -0.29 0.83 16 41 H 0.08 1.34 7.00 -51.93 -0.36 0.98 16 42 H 0.08 1.01 5.48 -51.93 -0.28 0.72 16 43 H 0.36 4.78 8.47 50.07 0.42 5.20 16 44 H 0.08 0.95 6.07 -51.93 -0.32 0.63 16 45 H 0.08 0.80 4.13 -51.93 -0.21 0.58 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.07 0.63 7.88 -51.93 -0.41 0.23 16 48 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 50 H 0.07 0.70 7.77 -51.93 -0.40 0.30 16 51 H 0.08 0.90 8.07 -51.93 -0.42 0.48 16 LS Contribution 375.17 15.07 5.65 5.65 Total: -1.00 -31.91 375.17 -11.24 -43.16 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -7.48 Total: 5.22 kcal Atomic # 6 Polarization: -23.40 SS G_CDS: -3.77 Total: -27.16 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: -0.38 Total: -36.07 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: -0.25 Total: -8.19 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.91 -11.24 -43.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134356612.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.033 kcal (2) G-P(sol) polarization free energy of solvation -31.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds