Wall clock time and date at job start Tue Mar 31 2020 11:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99987 * 2 1 4 4 H 1.48508 * 109.47237 * 240.00026 * 3 2 1 5 5 H 1.48501 * 109.47343 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47737 * 119.99780 * 3 2 1 7 7 C 1.37872 * 120.00345 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00721 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99837 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47173 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46860 * 180.02562 * 10 9 7 12 12 N 1.46904 * 109.46581 * 184.92022 * 11 10 9 13 13 C 1.46908 * 110.99649 * 187.33124 * 12 11 10 14 14 C 1.50700 * 109.46875 * 169.34415 * 13 12 11 15 15 C 1.38237 * 120.00138 * 275.26130 * 14 13 12 16 16 C 1.38238 * 119.99830 * 179.76614 * 15 14 13 17 17 C 1.38243 * 119.99726 * 0.51143 * 16 15 14 18 18 C 1.38229 * 119.99732 * 359.73944 * 17 16 15 19 19 C 1.38231 * 120.00928 * 0.02562 * 18 17 16 20 20 C 1.46895 * 110.99959 * 63.38609 * 12 11 10 21 21 C 1.52999 * 109.47713 * 46.82503 * 20 12 11 22 22 O 1.42900 * 110.43044 * 296.01254 * 21 20 12 23 23 C 1.54890 * 110.48552 * 58.55055 * 21 20 12 24 24 C 1.55235 * 102.58679 * 156.68065 * 23 21 20 25 25 C 1.54267 * 104.23090 * 322.08443 * 24 23 21 26 26 C 1.53881 * 106.59887 * 23.61355 * 25 24 23 27 27 H 0.97001 * 119.99854 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47048 * 60.00385 * 9 7 2 29 29 H 1.09002 * 109.47603 * 300.00497 * 9 7 2 30 30 H 1.08995 * 109.47012 * 60.00732 * 10 9 7 31 31 H 1.08998 * 109.47047 * 300.00013 * 10 9 7 32 32 H 1.08995 * 109.46949 * 64.92586 * 11 10 9 33 33 H 1.08997 * 109.47542 * 304.91968 * 11 10 9 34 34 H 1.08999 * 109.47446 * 289.35307 * 13 12 11 35 35 H 1.09004 * 109.46603 * 49.35120 * 13 12 11 36 36 H 1.07998 * 119.99987 * 359.97438 * 15 14 13 37 37 H 1.07993 * 120.00008 * 180.22457 * 16 15 14 38 38 H 1.07999 * 119.99725 * 179.72609 * 17 16 15 39 39 H 1.08007 * 119.99748 * 179.97438 * 18 17 16 40 40 H 1.08000 * 120.00613 * 179.97438 * 19 18 17 41 41 H 1.09005 * 109.46824 * 286.82404 * 20 12 11 42 42 H 1.09004 * 109.47244 * 166.83094 * 20 12 11 43 43 H 0.96705 * 114.00161 * 179.97438 * 22 21 20 44 44 H 1.09001 * 110.75745 * 275.07158 * 23 21 20 45 45 H 1.08997 * 110.75373 * 38.44372 * 23 21 20 46 46 H 1.09000 * 110.46952 * 203.39936 * 24 23 21 47 47 H 1.08999 * 110.47004 * 80.77423 * 24 23 21 48 48 H 1.08996 * 110.03537 * 264.32554 * 25 24 23 49 49 H 1.09008 * 110.03183 * 142.89706 * 25 24 23 50 50 H 1.09002 * 110.02778 * 240.71653 * 26 25 24 51 51 H 1.09001 * 110.03208 * 119.28553 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 6 1.4803 -4.9871 0.0020 12 7 2.4307 -6.1010 0.1205 13 6 1.7517 -7.3926 -0.0496 14 6 2.7794 -8.4866 -0.1837 15 6 3.3386 -8.7622 -1.4175 16 6 4.2849 -9.7625 -1.5396 17 6 4.6643 -10.4941 -0.4297 18 6 4.1013 -10.2218 0.8030 19 6 3.1586 -9.2184 0.9261 20 6 3.1470 -6.0478 1.4019 21 6 2.1480 -5.8054 2.5351 22 8 1.5250 -4.5280 2.3862 23 6 1.0815 -6.9282 2.5669 24 6 0.5825 -6.8793 4.0361 25 6 1.8547 -6.5901 4.8593 26 6 2.8501 -5.9073 3.9049 27 1 -0.4850 0.8401 -0.0004 28 1 0.6242 -2.5575 -0.8880 29 1 0.6247 -2.5563 0.8919 30 1 2.8726 -3.6039 0.8910 31 1 2.8713 -3.6047 -0.8890 32 1 0.9211 -5.0841 -0.9285 33 1 0.7896 -5.0075 0.8449 34 1 1.1224 -7.5895 0.8183 35 1 1.1337 -7.3626 -0.9471 36 1 3.0385 -8.1939 -2.2855 37 1 4.7243 -9.9754 -2.5028 38 1 5.4004 -11.2786 -0.5259 39 1 4.3974 -10.7937 1.6701 40 1 2.7185 -9.0060 1.8892 41 1 3.8737 -5.2357 1.3784 42 1 3.6636 -6.9929 1.5689 43 1 0.8811 -4.3214 3.0775 44 1 0.2697 -6.7097 1.8731 45 1 1.5320 -7.8953 2.3438 46 1 0.1514 -7.8380 4.3244 47 1 -0.1455 -6.0783 4.1650 48 1 2.2768 -7.5225 5.2343 49 1 1.6186 -5.9256 5.6905 50 1 3.7551 -6.5083 3.8167 51 1 3.0970 -4.9114 4.2729 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134356612.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:47 Heat of formation + Delta-G solvation = -31.889825 kcal Electronic energy + Delta-G solvation = -28141.769465 eV Core-core repulsion = 24619.299992 eV Total energy + Delta-G solvation = -3522.469472 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.57016 -39.81139 -37.59519 -35.80359 -35.30798 -33.54826 -32.13503 -31.74762 -30.38008 -29.58936 -28.22619 -26.82386 -25.38477 -23.46962 -23.31030 -21.73543 -21.59317 -21.28504 -20.58969 -18.41651 -18.13706 -17.58726 -16.85990 -16.70518 -16.35061 -16.18123 -16.08803 -15.87773 -15.31085 -14.94410 -14.79921 -14.34049 -14.16323 -14.11654 -13.99733 -13.58271 -13.38395 -13.25816 -13.05135 -12.81639 -12.70343 -12.51609 -12.43196 -12.33056 -12.12236 -12.05500 -11.93032 -11.84776 -11.77072 -11.47120 -11.35233 -11.20634 -11.15122 -10.95317 -10.54744 -10.38082 -9.73702 -9.59526 -8.80853 -8.14545 -6.23779 0.49684 0.57350 1.38744 1.42301 1.50039 2.43413 2.83267 3.17463 3.24192 3.42173 3.62844 3.68677 3.84883 3.92084 4.02934 4.19050 4.24788 4.26620 4.36114 4.42261 4.51364 4.54989 4.59157 4.62897 4.69383 4.73805 4.75506 4.81803 4.86952 4.91718 5.00562 5.04785 5.05602 5.10650 5.20055 5.21832 5.24478 5.27736 5.29663 5.43477 5.44485 5.47970 5.62631 5.64259 5.69198 5.80225 5.96132 6.01138 6.18013 6.26239 6.34037 6.40895 6.93143 6.94314 7.43687 8.96922 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013878 B = 0.003646 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.149773 B = 7677.316382 C = 8965.788899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.960 3.040 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.537 4.537 8 H 0.049 0.951 9 C 0.042 3.958 10 C -0.068 4.068 11 C 0.059 3.941 12 N -0.535 5.535 13 C 0.058 3.942 14 C -0.080 4.080 15 C -0.119 4.119 16 C -0.129 4.129 17 C -0.129 4.129 18 C -0.124 4.124 19 C -0.127 4.127 20 C 0.072 3.928 21 C 0.094 3.906 22 O -0.543 6.543 23 C -0.156 4.156 24 C -0.126 4.126 25 C -0.119 4.119 26 C -0.148 4.148 27 H 0.262 0.738 28 H -0.025 1.025 29 H 0.002 0.998 30 H 0.053 0.947 31 H 0.017 0.983 32 H 0.037 0.963 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.114 0.886 37 H 0.134 0.866 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.132 0.868 41 H 0.055 0.945 42 H 0.098 0.902 43 H 0.368 0.632 44 H 0.067 0.933 45 H 0.094 0.906 46 H 0.082 0.918 47 H 0.062 0.938 48 H 0.078 0.922 49 H 0.065 0.935 50 H 0.079 0.921 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.614 -24.377 7.751 26.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.785 3.215 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.575 4.575 8 H 0.067 0.933 9 C 0.005 3.995 10 C -0.106 4.106 11 C -0.067 4.067 12 N -0.257 5.257 13 C -0.068 4.068 14 C -0.081 4.081 15 C -0.138 4.138 16 C -0.147 4.147 17 C -0.147 4.147 18 C -0.142 4.142 19 C -0.145 4.145 20 C -0.056 4.056 21 C 0.052 3.948 22 O -0.350 6.350 23 C -0.192 4.192 24 C -0.163 4.163 25 C -0.156 4.156 26 C -0.187 4.187 27 H 0.071 0.929 28 H -0.007 1.007 29 H 0.020 0.980 30 H 0.072 0.928 31 H 0.036 0.964 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.132 0.868 37 H 0.152 0.848 38 H 0.159 0.841 39 H 0.161 0.839 40 H 0.150 0.850 41 H 0.074 0.926 42 H 0.116 0.884 43 H 0.217 0.783 44 H 0.085 0.915 45 H 0.112 0.888 46 H 0.101 0.899 47 H 0.081 0.919 48 H 0.097 0.903 49 H 0.084 0.916 50 H 0.098 0.902 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.193 -24.185 6.825 25.882 hybrid contribution -0.726 1.320 0.664 1.646 sum 5.467 -22.865 7.489 24.674 Atomic orbital electron populations 1.70090 1.07583 1.27514 1.52123 1.25905 0.95761 1.02966 0.94997 0.85589 0.78382 0.78559 0.79019 1.19541 1.20561 1.19293 1.21664 0.93077 0.92881 1.49905 0.93307 1.18798 0.94111 0.92478 0.94153 1.21148 0.97563 0.93314 0.98530 1.22447 0.94436 0.89506 1.00313 1.62136 1.29312 1.01799 1.32436 1.21757 0.94694 0.87295 1.03101 1.19842 0.98046 0.96221 0.93978 1.21196 0.97340 0.97752 0.97494 1.21402 0.97442 0.95946 0.99876 1.21451 1.00344 1.00182 0.92712 1.21419 0.96646 0.97675 0.98443 1.21297 0.98620 0.96472 0.98136 1.22274 0.95482 1.01923 0.85925 1.22843 0.92869 0.83799 0.95291 1.87110 1.60014 1.35655 1.52187 1.23656 0.98581 0.99443 0.97570 1.22483 0.97550 1.02471 0.93843 1.22101 0.94912 1.00953 0.97649 1.22822 0.99624 1.01463 0.94764 0.92934 1.00655 0.97982 0.92836 0.96404 0.94431 0.90200 0.89803 0.91343 0.86798 0.84803 0.84062 0.83888 0.85040 0.92646 0.88405 0.78318 0.91458 0.88783 0.89945 0.91873 0.90320 0.91574 0.90218 0.92052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.62 13.29 21.45 0.28 -58.34 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.96 46.30 29.54 68.60 2.03 48.32 16 4 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.54 -32.60 9.11 25.60 0.23 -32.37 16 8 H 0.05 2.91 7.74 -2.91 -0.02 2.88 16 9 C 0.04 2.37 4.94 29.85 0.15 2.52 16 10 C -0.07 -3.14 4.26 30.60 0.13 -3.01 16 11 C 0.06 2.24 4.30 86.30 0.37 2.61 16 12 N -0.53 -16.56 4.72 -900.76 -4.25 -20.81 16 13 C 0.06 1.46 4.66 85.56 0.40 1.86 16 14 C -0.08 -1.83 4.80 -19.86 -0.10 -1.93 16 15 C -0.12 -2.75 9.72 22.27 0.22 -2.54 16 16 C -0.13 -2.46 10.05 22.27 0.22 -2.24 16 17 C -0.13 -2.11 10.05 22.27 0.22 -1.88 16 18 C -0.12 -2.00 10.05 22.27 0.22 -1.77 16 19 C -0.13 -2.37 7.95 22.27 0.18 -2.20 16 20 C 0.07 2.02 4.35 86.30 0.38 2.40 16 21 C 0.09 2.30 0.76 -9.72 -0.01 2.30 16 22 O -0.54 -17.35 7.15 -148.98 -1.07 -18.41 16 23 C -0.16 -3.06 3.74 32.01 0.12 -2.94 16 24 C -0.13 -2.04 6.53 31.79 0.21 -1.83 16 25 C -0.12 -1.87 6.80 31.32 0.21 -1.65 16 26 C -0.15 -3.01 6.09 31.32 0.19 -2.82 16 27 H 0.26 15.46 8.31 -92.71 -0.77 14.68 16 28 H -0.02 -1.53 8.14 -2.39 -0.02 -1.55 16 29 H 0.00 0.11 7.80 -2.39 -0.02 0.09 16 30 H 0.05 2.50 5.48 -2.39 -0.01 2.49 16 31 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.04 1.47 7.98 -2.39 -0.02 1.46 16 33 H 0.08 2.96 3.98 0.28 0.00 2.96 16 34 H 0.08 1.87 2.99 -2.39 -0.01 1.86 16 35 H 0.07 1.81 7.93 -2.39 -0.02 1.79 16 36 H 0.11 2.71 8.06 -2.91 -0.02 2.69 16 37 H 0.13 2.04 8.06 -2.91 -0.02 2.01 16 38 H 0.14 1.58 8.06 -2.91 -0.02 1.55 16 39 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 40 H 0.13 2.05 5.51 -2.91 -0.02 2.03 16 41 H 0.06 1.85 7.00 -2.38 -0.02 1.83 16 42 H 0.10 2.35 5.48 -2.38 -0.01 2.34 16 43 H 0.37 10.13 8.47 -66.64 -0.56 9.56 16 44 H 0.07 1.53 6.07 -2.39 -0.01 1.52 16 45 H 0.09 1.61 4.13 -2.39 -0.01 1.60 16 46 H 0.08 1.08 8.14 -2.39 -0.02 1.07 16 47 H 0.06 1.09 7.88 -2.39 -0.02 1.07 16 48 H 0.08 1.00 8.14 -2.39 -0.02 0.99 16 49 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 50 H 0.08 1.45 7.77 -2.39 -0.02 1.43 16 51 H 0.06 1.43 8.07 -2.39 -0.02 1.41 16 Total: -1.00 -70.24 375.17 1.18 -69.06 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: 0.37 Total: 25.15 kcal Atomic # 6 Polarization: -48.78 SS G_CDS: 3.81 Total: -44.97 kcal Atomic # 7 Polarization: -75.18 SS G_CDS: -3.97 Total: -79.15 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -1.07 Total: -18.41 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.32 kcal Total: -70.24 1.18 -69.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134356612.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.168 kcal (2) G-P(sol) polarization free energy of solvation -70.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds