Wall clock time and date at job start Tue Mar 31 2020 12:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46799 * 2 1 4 4 C 1.53003 * 109.47064 * 174.99697 * 3 2 1 5 5 C 1.53001 * 115.54700 * 65.14853 * 4 3 2 6 6 N 1.46900 * 109.47483 * 39.74401 * 5 4 3 7 7 C 1.46898 * 111.00316 * 175.14723 * 6 5 4 8 8 C 1.50698 * 109.47090 * 179.97438 * 7 6 5 9 9 C 1.38280 * 119.97594 * 269.97613 * 8 7 6 10 10 C 1.38247 * 120.11310 * 180.02562 * 9 8 7 11 11 C 1.38168 * 120.05285 * 359.68665 * 10 9 8 12 12 C 1.38708 * 119.94433 * 0.61545 * 11 10 9 13 13 O 1.35901 * 120.05508 * 179.68195 * 12 11 10 14 14 C 1.42902 * 116.99930 * 359.72162 * 13 12 11 15 15 C 1.52997 * 109.46870 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47149 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00009 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00375 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99598 * 0.02562 * 18 16 15 20 20 Si 1.86790 * 120.00303 * 180.02562 * 18 16 15 21 21 H 1.48509 * 109.46998 * 60.00263 * 20 18 16 22 22 H 1.48505 * 109.47325 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47193 * 300.00441 * 20 18 16 24 24 C 1.38128 * 119.97112 * 90.00448 * 8 7 6 25 25 C 1.52995 * 117.51603 * 210.85050 * 4 3 2 26 26 C 1.53000 * 117.49730 * 279.48068 * 4 3 2 27 27 H 1.08999 * 109.46452 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47021 * 299.99717 * 1 2 3 29 29 H 1.08992 * 109.47331 * 60.00428 * 1 2 3 30 30 H 1.09002 * 109.46957 * 240.00144 * 2 1 3 31 31 H 1.09000 * 109.47364 * 120.00232 * 2 1 3 32 32 H 1.08994 * 109.47121 * 54.99791 * 3 2 1 33 33 H 1.09000 * 109.46895 * 294.99471 * 3 2 1 34 34 H 1.08995 * 109.47349 * 279.74148 * 5 4 3 35 35 H 1.09002 * 109.46917 * 159.74357 * 5 4 3 36 36 H 1.00898 * 110.99735 * 51.19105 * 6 5 4 37 37 H 1.08996 * 109.46969 * 59.99866 * 7 6 5 38 38 H 1.09001 * 109.47095 * 299.99918 * 7 6 5 39 39 H 1.08006 * 119.94320 * 0.02562 * 9 8 7 40 40 H 1.08008 * 119.97257 * 179.97438 * 10 9 8 41 41 H 1.08003 * 120.02610 * 180.29479 * 11 10 9 42 42 H 1.08996 * 109.47185 * 300.00322 * 14 13 12 43 43 H 1.08991 * 109.46989 * 60.00265 * 14 13 12 44 44 H 1.08996 * 109.47407 * 300.00097 * 15 14 13 45 45 H 1.09001 * 109.47262 * 60.00119 * 15 14 13 46 46 H 0.96999 * 119.99968 * 179.97438 * 19 18 16 47 47 H 1.08002 * 120.02371 * 0.02562 * 24 8 7 48 48 H 1.09008 * 117.49579 * 214.96975 * 25 4 3 49 49 H 1.08997 * 117.50135 * 359.97438 * 25 4 3 50 50 H 1.08993 * 117.49870 * 359.97438 * 26 4 3 51 51 H 1.09001 * 117.49512 * 144.97664 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5648 1.4445 0.1258 5 6 4.3247 0.8290 -1.0509 6 7 3.6760 1.2181 -2.3102 7 6 4.4443 0.7407 -3.4677 8 6 3.7493 1.1572 -4.7382 9 6 2.8061 0.3261 -5.3143 10 6 2.1672 0.7052 -6.4802 11 6 2.4651 1.9190 -7.0692 12 6 3.4153 2.7517 -6.4968 13 8 3.7148 3.9432 -7.0779 14 6 3.0167 4.2721 -8.2806 15 6 3.4838 5.6394 -8.7837 16 6 2.7481 5.9859 -10.0525 17 1 2.0199 5.2998 -10.4591 18 6 3.0039 7.1794 -10.6937 19 7 3.8903 8.0152 -10.1983 20 14 2.0915 7.6093 -12.2659 21 1 0.6320 7.6532 -11.9950 22 1 2.5449 8.9364 -12.7543 23 1 2.3725 6.5798 -13.2986 24 6 4.0553 2.3688 -5.3268 25 6 4.2134 2.6300 0.8432 26 6 4.1585 1.2608 1.5239 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6053 1.9816 0.8417 33 1 1.7517 1.9298 -0.9314 34 1 4.3184 -0.2571 -0.9594 35 1 5.3540 1.1879 -1.0464 36 1 3.5402 2.2169 -2.3533 37 1 4.5160 -0.3464 -3.4328 38 1 5.4451 1.1718 -3.4423 39 1 2.5682 -0.6209 -4.8526 40 1 1.4312 0.0541 -6.9284 41 1 1.9622 2.2169 -7.9775 42 1 3.2230 3.5165 -9.0386 43 1 1.9455 4.3042 -8.0818 44 1 3.2778 6.3952 -8.0259 45 1 4.5550 5.6068 -8.9827 46 1 4.0705 8.8547 -10.6495 47 1 4.7926 3.0172 -4.8770 48 1 5.1816 2.9715 0.4769 49 1 3.5539 3.4091 1.2254 50 1 3.4628 1.1391 2.3541 51 1 5.0904 0.7012 1.6054 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151554747.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:31 Heat of formation + Delta-G solvation = -18.847737 kcal Electronic energy + Delta-G solvation = -25502.741001 eV Core-core repulsion = 21980.837076 eV Total energy + Delta-G solvation = -3521.903925 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.84018 -39.12843 -37.46599 -35.24655 -33.95506 -33.37701 -31.28928 -30.72892 -29.15835 -27.75529 -26.59048 -25.04493 -23.99277 -22.87403 -22.24651 -21.76444 -21.61445 -20.17711 -19.11943 -17.63727 -16.46261 -16.18557 -15.75505 -15.59873 -15.52819 -15.30820 -15.00954 -14.64534 -14.52024 -14.32051 -14.04586 -13.62372 -13.23488 -12.94240 -12.77786 -12.52859 -12.51253 -12.30953 -12.22950 -12.08468 -11.78856 -11.44454 -11.39716 -11.32661 -11.28343 -11.02700 -10.85600 -10.79594 -10.73712 -10.46290 -10.34770 -9.87966 -9.85276 -9.66354 -9.31873 -8.82383 -8.53476 -8.45073 -7.82298 -6.10811 -4.15551 1.44846 1.71401 3.28326 3.32648 3.34405 3.40468 3.77155 3.86387 4.18835 4.38062 4.40617 4.57199 4.64527 4.73929 4.81298 4.97740 5.03754 5.04358 5.17810 5.21041 5.25452 5.29271 5.32619 5.35053 5.43952 5.49343 5.53120 5.58457 5.64344 5.67479 5.71993 5.79479 5.81896 5.82492 5.83984 6.03431 6.04654 6.06920 6.19317 6.20802 6.24037 6.56162 6.57039 6.70743 6.73744 6.79098 7.00692 7.17074 7.50049 7.63352 7.81020 8.06480 8.23333 8.89786 9.48673 11.00723 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017610 B = 0.002038 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.640450 B =13737.567092 C =14135.471075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.071 4.071 4 C -0.121 4.121 5 C 0.098 3.902 6 N -0.677 5.677 7 C 0.102 3.898 8 C -0.050 4.050 9 C -0.148 4.148 10 C -0.082 4.082 11 C -0.210 4.210 12 C 0.145 3.855 13 O -0.317 6.317 14 C 0.066 3.934 15 C 0.026 3.974 16 C -0.527 4.527 17 H 0.058 0.942 18 C 0.060 3.940 19 N -0.890 5.890 20 Si 0.899 3.101 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.275 1.275 24 C -0.156 4.156 25 C -0.179 4.179 26 C -0.172 4.172 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.030 0.970 36 H 0.346 0.654 37 H 0.080 0.920 38 H 0.038 0.962 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.129 0.871 42 H 0.050 0.950 43 H 0.050 0.950 44 H 0.027 0.973 45 H 0.027 0.973 46 H 0.264 0.736 47 H 0.123 0.877 48 H 0.092 0.908 49 H 0.094 0.906 50 H 0.094 0.906 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.282 -17.822 21.828 28.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.108 4.108 4 C -0.122 4.122 5 C -0.031 4.031 6 N -0.308 5.308 7 C -0.026 4.026 8 C -0.051 4.051 9 C -0.167 4.167 10 C -0.100 4.100 11 C -0.229 4.229 12 C 0.098 3.902 13 O -0.230 6.230 14 C -0.008 4.008 15 C -0.012 4.012 16 C -0.565 4.565 17 H 0.076 0.924 18 C -0.142 4.142 19 N -0.528 5.528 20 Si 0.727 3.273 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.176 4.176 25 C -0.216 4.216 26 C -0.210 4.210 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.048 0.952 36 H 0.164 0.836 37 H 0.098 0.902 38 H 0.056 0.944 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.147 0.853 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.074 0.926 47 H 0.141 0.859 48 H 0.110 0.890 49 H 0.112 0.888 50 H 0.112 0.888 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.476 -18.018 21.845 28.355 hybrid contribution 0.156 0.897 -1.019 1.366 sum -1.320 -17.121 20.826 26.993 Atomic orbital electron populations 1.21769 0.96308 1.01271 1.01605 1.21398 0.95152 0.96788 1.01936 1.20994 0.90622 0.97184 1.02038 1.21571 0.95836 1.02096 0.92651 1.21436 0.94110 1.00047 0.87538 1.60516 1.49749 1.20232 1.00334 1.20831 0.93903 1.00516 0.87379 1.19369 0.96763 0.93635 0.95292 1.20747 0.98649 1.00428 0.96886 1.20897 0.98492 0.95437 0.95157 1.21391 1.01866 0.96557 1.03131 1.19141 0.92866 0.85926 0.92286 1.86168 1.63244 1.32403 1.41190 1.23320 0.95115 1.00578 0.81835 1.19116 0.97807 0.88276 0.95952 1.20933 1.23388 1.03906 1.08294 0.92414 1.24994 0.95220 0.96134 0.97866 1.69967 1.32960 1.10074 1.39771 0.86540 0.80055 0.77653 0.83078 1.20074 1.21114 1.20092 1.20269 1.03692 0.97568 0.96033 1.23133 1.02327 0.91717 1.04413 1.22971 1.02639 0.99996 0.95393 0.93113 0.93300 0.92564 0.91136 0.92909 0.92864 0.90456 0.90704 0.95217 0.83562 0.90202 0.94359 0.86406 0.86224 0.85325 0.93164 0.93136 0.95422 0.95437 0.92646 0.85868 0.88995 0.88776 0.88785 0.89029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 2 C -0.12 -0.89 5.74 -26.73 -0.15 -1.05 16 3 C -0.07 -0.57 4.75 -26.73 -0.13 -0.69 16 4 C -0.12 -0.92 1.82 -154.51 -0.28 -1.20 16 5 C 0.10 0.77 5.29 -3.82 -0.02 0.75 16 6 N -0.68 -6.21 5.51 -115.06 -0.63 -6.84 16 7 C 0.10 1.00 5.80 -4.98 -0.03 0.97 16 8 C -0.05 -0.62 5.39 -104.65 -0.56 -1.19 16 9 C -0.15 -1.82 9.70 -39.56 -0.38 -2.20 16 10 C -0.08 -1.08 10.04 -39.60 -0.40 -1.47 16 11 C -0.21 -3.31 9.04 -39.43 -0.36 -3.67 16 12 C 0.14 2.53 6.69 -39.22 -0.26 2.27 16 13 O -0.32 -6.57 10.14 -19.43 -0.20 -6.77 16 14 C 0.07 1.42 4.68 37.16 0.17 1.59 16 15 C 0.03 0.68 5.34 -27.88 -0.15 0.53 16 16 C -0.53 -14.73 9.11 -34.44 -0.31 -15.04 16 17 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 20 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 24 C -0.16 -2.33 9.64 -39.43 -0.38 -2.71 16 25 C -0.18 -1.31 9.87 -26.73 -0.26 -1.58 16 26 C -0.17 -1.16 9.97 -26.73 -0.27 -1.43 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.61 7.87 -51.93 -0.41 0.21 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.42 8.09 -51.93 -0.42 -0.01 16 33 H 0.08 0.72 7.37 -51.93 -0.38 0.34 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.03 0.24 7.94 -51.93 -0.41 -0.18 16 36 H 0.35 3.42 8.49 -39.29 -0.33 3.08 16 37 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 38 H 0.04 0.37 8.09 -51.93 -0.42 -0.05 16 39 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 40 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 41 H 0.13 2.00 6.30 -52.48 -0.33 1.67 16 42 H 0.05 1.03 7.67 -51.93 -0.40 0.64 16 43 H 0.05 1.04 7.65 -51.93 -0.40 0.64 16 44 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 47 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16 48 H 0.09 0.67 8.08 -51.92 -0.42 0.25 16 49 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 50 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 51 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 415.30 15.07 6.26 6.26 Total: -1.00 -29.35 415.30 -11.74 -41.09 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -9.38 Total: 1.06 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: -3.50 Total: -25.30 kcal Atomic # 7 Polarization: -32.73 SS G_CDS: 0.10 Total: -32.62 kcal Atomic # 8 Polarization: -6.57 SS G_CDS: -0.20 Total: -6.77 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -29.35 -11.74 -41.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151554747.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.245 kcal (2) G-P(sol) polarization free energy of solvation -29.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds