Wall clock time and date at job start Tue Mar 31 2020 12:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46799 * 2 1 4 4 C 1.53003 * 109.47064 * 174.99697 * 3 2 1 5 5 C 1.53001 * 115.54700 * 65.14853 * 4 3 2 6 6 N 1.46900 * 109.47483 * 39.74401 * 5 4 3 7 7 C 1.46898 * 111.00316 * 175.14723 * 6 5 4 8 8 C 1.50698 * 109.47090 * 179.97438 * 7 6 5 9 9 C 1.38280 * 119.97594 * 269.97613 * 8 7 6 10 10 C 1.38247 * 120.11310 * 180.02562 * 9 8 7 11 11 C 1.38168 * 120.05285 * 359.68665 * 10 9 8 12 12 C 1.38708 * 119.94433 * 0.61545 * 11 10 9 13 13 O 1.35901 * 120.05508 * 179.68195 * 12 11 10 14 14 C 1.42902 * 116.99930 * 359.72162 * 13 12 11 15 15 C 1.52997 * 109.46870 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47149 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00009 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00375 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99598 * 0.02562 * 18 16 15 20 20 Si 1.86790 * 120.00303 * 180.02562 * 18 16 15 21 21 H 1.48509 * 109.46998 * 60.00263 * 20 18 16 22 22 H 1.48505 * 109.47325 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47193 * 300.00441 * 20 18 16 24 24 C 1.38128 * 119.97112 * 90.00448 * 8 7 6 25 25 C 1.52995 * 117.51603 * 210.85050 * 4 3 2 26 26 C 1.53000 * 117.49730 * 279.48068 * 4 3 2 27 27 H 1.08999 * 109.46452 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47021 * 299.99717 * 1 2 3 29 29 H 1.08992 * 109.47331 * 60.00428 * 1 2 3 30 30 H 1.09002 * 109.46957 * 240.00144 * 2 1 3 31 31 H 1.09000 * 109.47364 * 120.00232 * 2 1 3 32 32 H 1.08994 * 109.47121 * 54.99791 * 3 2 1 33 33 H 1.09000 * 109.46895 * 294.99471 * 3 2 1 34 34 H 1.08995 * 109.47349 * 279.74148 * 5 4 3 35 35 H 1.09002 * 109.46917 * 159.74357 * 5 4 3 36 36 H 1.00898 * 110.99735 * 51.19105 * 6 5 4 37 37 H 1.08996 * 109.46969 * 59.99866 * 7 6 5 38 38 H 1.09001 * 109.47095 * 299.99918 * 7 6 5 39 39 H 1.08006 * 119.94320 * 0.02562 * 9 8 7 40 40 H 1.08008 * 119.97257 * 179.97438 * 10 9 8 41 41 H 1.08003 * 120.02610 * 180.29479 * 11 10 9 42 42 H 1.08996 * 109.47185 * 300.00322 * 14 13 12 43 43 H 1.08991 * 109.46989 * 60.00265 * 14 13 12 44 44 H 1.08996 * 109.47407 * 300.00097 * 15 14 13 45 45 H 1.09001 * 109.47262 * 60.00119 * 15 14 13 46 46 H 0.96999 * 119.99968 * 179.97438 * 19 18 16 47 47 H 1.08002 * 120.02371 * 0.02562 * 24 8 7 48 48 H 1.09008 * 117.49579 * 214.96975 * 25 4 3 49 49 H 1.08997 * 117.50135 * 359.97438 * 25 4 3 50 50 H 1.08993 * 117.49870 * 359.97438 * 26 4 3 51 51 H 1.09001 * 117.49512 * 144.97664 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5648 1.4445 0.1258 5 6 4.3247 0.8290 -1.0509 6 7 3.6760 1.2181 -2.3102 7 6 4.4443 0.7407 -3.4677 8 6 3.7493 1.1572 -4.7382 9 6 2.8061 0.3261 -5.3143 10 6 2.1672 0.7052 -6.4802 11 6 2.4651 1.9190 -7.0692 12 6 3.4153 2.7517 -6.4968 13 8 3.7148 3.9432 -7.0779 14 6 3.0167 4.2721 -8.2806 15 6 3.4838 5.6394 -8.7837 16 6 2.7481 5.9859 -10.0525 17 1 2.0199 5.2998 -10.4591 18 6 3.0039 7.1794 -10.6937 19 7 3.8903 8.0152 -10.1983 20 14 2.0915 7.6093 -12.2659 21 1 0.6320 7.6532 -11.9950 22 1 2.5449 8.9364 -12.7543 23 1 2.3725 6.5798 -13.2986 24 6 4.0553 2.3688 -5.3268 25 6 4.2134 2.6300 0.8432 26 6 4.1585 1.2608 1.5239 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6053 1.9816 0.8417 33 1 1.7517 1.9298 -0.9314 34 1 4.3184 -0.2571 -0.9594 35 1 5.3540 1.1879 -1.0464 36 1 3.5402 2.2169 -2.3533 37 1 4.5160 -0.3464 -3.4328 38 1 5.4451 1.1718 -3.4423 39 1 2.5682 -0.6209 -4.8526 40 1 1.4312 0.0541 -6.9284 41 1 1.9622 2.2169 -7.9775 42 1 3.2230 3.5165 -9.0386 43 1 1.9455 4.3042 -8.0818 44 1 3.2778 6.3952 -8.0259 45 1 4.5550 5.6068 -8.9827 46 1 4.0705 8.8547 -10.6495 47 1 4.7926 3.0172 -4.8770 48 1 5.1816 2.9715 0.4769 49 1 3.5539 3.4091 1.2254 50 1 3.4628 1.1391 2.3541 51 1 5.0904 0.7012 1.6054 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000151554747.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:30 Heat of formation + Delta-G solvation = -32.635716 kcal Electronic energy + Delta-G solvation = -25503.338892 eV Core-core repulsion = 21980.837076 eV Total energy + Delta-G solvation = -3522.501816 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.08121 -39.80309 -38.71974 -36.11167 -35.44369 -34.55362 -32.59318 -32.20727 -30.58711 -28.45052 -27.42757 -26.88205 -24.89344 -23.54672 -23.35164 -23.25200 -22.33185 -21.53130 -19.80114 -19.06839 -18.15078 -17.19657 -16.94819 -16.91013 -16.76361 -16.41235 -16.21820 -15.82679 -15.41470 -15.06077 -14.92948 -14.35078 -14.33880 -14.32348 -14.21456 -14.02729 -13.47848 -13.31766 -13.05291 -12.97118 -12.87916 -12.78181 -12.56483 -12.56081 -12.33995 -12.32356 -12.03803 -11.89358 -11.64233 -11.58690 -11.56770 -11.40877 -11.39519 -10.96428 -10.62500 -10.46621 -9.85387 -9.31638 -9.08086 -8.27566 -6.41500 0.35287 0.55833 1.40181 1.44293 1.52282 2.26666 2.50782 2.73077 2.88969 3.06613 3.39190 3.78475 3.84373 3.91780 3.97369 4.07095 4.11775 4.18057 4.23052 4.25527 4.35877 4.42685 4.44451 4.47501 4.58331 4.61857 4.66459 4.69562 4.72956 4.80668 4.81996 4.87047 5.01324 5.06347 5.09981 5.13017 5.19152 5.22347 5.28204 5.30425 5.43514 5.44498 5.45142 5.54047 5.57592 5.61242 5.65730 5.68332 5.91140 6.05930 6.09262 6.38672 6.57457 6.72978 7.28561 8.85359 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017610 B = 0.002038 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.640450 B =13737.567092 C =14135.471075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.110 4.110 3 C -0.067 4.067 4 C -0.126 4.126 5 C 0.102 3.898 6 N -0.678 5.678 7 C 0.107 3.893 8 C -0.043 4.043 9 C -0.138 4.138 10 C -0.079 4.079 11 C -0.223 4.223 12 C 0.106 3.894 13 O -0.343 6.343 14 C 0.086 3.914 15 C 0.029 3.971 16 C -0.547 4.547 17 H 0.071 0.929 18 C 0.001 3.999 19 N -0.931 5.931 20 Si 0.977 3.023 21 H -0.263 1.263 22 H -0.282 1.282 23 H -0.263 1.263 24 C -0.164 4.164 25 C -0.186 4.186 26 C -0.162 4.162 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.031 0.969 36 H 0.340 0.660 37 H 0.098 0.902 38 H 0.040 0.960 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.125 0.875 42 H 0.059 0.941 43 H 0.059 0.941 44 H -0.002 1.002 45 H -0.002 1.002 46 H 0.267 0.733 47 H 0.121 0.879 48 H 0.090 0.910 49 H 0.092 0.908 50 H 0.099 0.901 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.389 -20.243 22.349 30.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.147 4.147 3 C -0.105 4.105 4 C -0.127 4.127 5 C -0.027 4.027 6 N -0.309 5.309 7 C -0.022 4.022 8 C -0.043 4.043 9 C -0.157 4.157 10 C -0.097 4.097 11 C -0.242 4.242 12 C 0.060 3.940 13 O -0.258 6.258 14 C 0.011 3.989 15 C -0.009 4.009 16 C -0.585 4.585 17 H 0.089 0.911 18 C -0.198 4.198 19 N -0.570 5.570 20 Si 0.800 3.200 21 H -0.188 1.188 22 H -0.207 1.207 23 H -0.188 1.188 24 C -0.184 4.184 25 C -0.223 4.223 26 C -0.200 4.200 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.049 0.951 36 H 0.158 0.842 37 H 0.116 0.884 38 H 0.058 0.942 39 H 0.166 0.834 40 H 0.167 0.833 41 H 0.143 0.857 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.076 0.924 47 H 0.139 0.861 48 H 0.109 0.891 49 H 0.111 0.889 50 H 0.118 0.882 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.585 -20.471 22.387 30.445 hybrid contribution 0.531 1.556 -1.027 1.938 sum -2.054 -18.915 21.360 28.605 Atomic orbital electron populations 1.21764 0.96211 1.01582 1.01346 1.21343 0.95196 0.96398 1.01800 1.20930 0.91023 0.97296 1.01221 1.21544 0.95507 1.02476 0.93148 1.21430 0.94017 1.00355 0.86896 1.60535 1.49833 1.19828 1.00698 1.20835 0.93592 1.01491 0.86251 1.19662 0.96369 0.92372 0.95915 1.21156 0.97269 1.01141 0.96128 1.21242 0.98697 0.94577 0.95198 1.21491 1.01768 0.97551 1.03380 1.19484 0.95191 0.85508 0.93769 1.86076 1.63932 1.34777 1.40978 1.22836 0.95247 0.97957 0.82827 1.18958 0.96070 0.90495 0.95335 1.21364 1.23746 1.04522 1.08844 0.91120 1.26061 0.96017 0.95918 1.01790 1.70117 1.34609 1.10638 1.41633 0.85327 0.78905 0.77537 0.78241 1.18804 1.20745 1.18807 1.20429 1.03724 0.98703 0.95515 1.23161 1.02267 0.92045 1.04807 1.23024 1.02907 0.99228 0.94832 0.92514 0.92925 0.93470 0.91881 0.92297 0.92817 0.92003 0.90067 0.95122 0.84227 0.88410 0.94189 0.83422 0.83304 0.85705 0.92289 0.92315 0.98395 0.98382 0.92422 0.86063 0.89114 0.88916 0.88234 0.88229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 71.98 0.71 -1.35 16 2 C -0.11 -1.52 5.74 30.60 0.18 -1.34 16 3 C -0.07 -1.00 4.75 30.60 0.15 -0.85 16 4 C -0.13 -1.73 1.82 -52.18 -0.09 -1.83 16 5 C 0.10 1.42 5.29 86.30 0.46 1.87 16 6 N -0.68 -11.34 5.51 -517.95 -2.85 -14.20 16 7 C 0.11 1.85 5.80 85.56 0.50 2.35 16 8 C -0.04 -0.99 5.39 -19.88 -0.11 -1.10 16 9 C -0.14 -2.99 9.70 22.28 0.22 -2.77 16 10 C -0.08 -1.90 10.04 22.26 0.22 -1.68 16 11 C -0.22 -6.92 9.04 22.37 0.20 -6.72 16 12 C 0.11 3.77 6.69 22.50 0.15 3.93 16 13 O -0.34 -14.94 10.14 -92.43 -0.94 -15.88 16 14 C 0.09 3.84 4.68 71.98 0.34 4.18 16 15 C 0.03 1.59 5.34 29.85 0.16 1.75 16 16 C -0.55 -31.20 9.11 25.60 0.23 -30.97 16 17 H 0.07 3.75 7.74 -2.91 -0.02 3.73 16 18 C 0.00 0.04 5.46 84.65 0.46 0.50 16 19 N -0.93 -57.07 13.29 21.45 0.28 -56.79 16 20 Si 0.98 43.71 29.54 68.60 2.03 45.74 16 21 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 23 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 24 C -0.16 -4.93 9.64 22.37 0.22 -4.72 16 25 C -0.19 -2.54 9.87 30.59 0.30 -2.23 16 26 C -0.16 -1.89 9.97 30.60 0.31 -1.59 16 27 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.97 7.87 -2.39 -0.02 0.95 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.05 0.78 8.09 -2.39 -0.02 0.76 16 33 H 0.06 1.11 7.37 -2.39 -0.02 1.10 16 34 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.03 0.43 7.94 -2.39 -0.02 0.41 16 36 H 0.34 6.47 8.49 -89.70 -0.76 5.71 16 37 H 0.10 1.39 8.08 -2.39 -0.02 1.37 16 38 H 0.04 0.70 8.09 -2.39 -0.02 0.68 16 39 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 40 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 41 H 0.13 3.87 6.30 -2.91 -0.02 3.86 16 42 H 0.06 2.49 7.67 -2.39 -0.02 2.47 16 43 H 0.06 2.49 7.65 -2.39 -0.02 2.47 16 44 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 45 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 46 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 47 H 0.12 3.56 8.06 -2.91 -0.02 3.54 16 48 H 0.09 1.25 8.08 -2.38 -0.02 1.23 16 49 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 50 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 51 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -65.05 415.30 3.23 -61.83 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.11 Total: 21.86 kcal Atomic # 6 Polarization: -47.15 SS G_CDS: 4.59 Total: -42.56 kcal Atomic # 7 Polarization: -68.41 SS G_CDS: -2.57 Total: -70.98 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.94 Total: -15.88 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -65.05 3.23 -61.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151554747.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.191 kcal (2) G-P(sol) polarization free energy of solvation -65.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds