Wall clock time and date at job start Tue Mar 31 2020 11:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38257 * 120.00671 * 2 1 4 4 C 1.38202 * 120.00370 * 180.23102 * 3 2 1 5 5 C 1.38260 * 120.00251 * 359.82086 * 4 3 2 6 6 C 1.38217 * 119.99812 * 359.97438 * 5 4 3 7 7 C 1.50698 * 120.00028 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.47032 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47271 * 299.98130 * 7 6 5 10 10 C 1.50698 * 109.47273 * 59.98133 * 7 6 5 11 11 O 1.21280 * 119.99772 * 335.29802 * 10 7 6 12 12 N 1.34779 * 120.00064 * 155.28816 * 10 7 6 13 13 C 1.46495 * 119.99811 * 6.41270 * 12 10 7 14 14 C 1.50710 * 109.46871 * 92.19503 * 13 12 10 15 15 H 1.07996 * 120.00051 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99829 * 179.97438 * 14 13 12 17 17 N 1.31509 * 119.99999 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99609 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47273 * 0.02562 * 18 16 14 20 20 H 1.48511 * 109.46939 * 120.00439 * 18 16 14 21 21 H 1.48503 * 109.47310 * 240.00118 * 18 16 14 22 22 C 1.46500 * 119.99885 * 186.41570 * 12 10 7 23 23 C 1.53004 * 109.47054 * 86.96005 * 22 12 10 24 24 C 1.53001 * 109.46964 * 54.69536 * 23 22 12 25 25 C 1.53004 * 109.46624 * 174.69419 * 23 22 12 26 26 C 1.52999 * 109.46818 * 294.69228 * 23 22 12 27 27 C 1.38217 * 119.99802 * 179.81652 * 2 1 3 28 28 H 1.09001 * 109.47353 * 270.19090 * 1 2 3 29 29 H 1.09003 * 109.47053 * 30.18514 * 1 2 3 30 30 H 1.08997 * 109.47889 * 150.18859 * 1 2 3 31 31 H 1.08004 * 119.99540 * 0.02562 * 3 2 1 32 32 H 1.08002 * 120.00327 * 179.79261 * 4 3 2 33 33 H 1.07998 * 120.00611 * 179.97438 * 5 4 3 34 34 H 1.08998 * 109.47224 * 55.48254 * 9 7 6 35 35 H 1.08996 * 109.47264 * 175.48309 * 9 7 6 36 36 H 1.09006 * 109.47461 * 295.48596 * 9 7 6 37 37 H 1.09003 * 109.47219 * 212.19186 * 13 12 10 38 38 H 1.09000 * 109.47473 * 332.19652 * 13 12 10 39 39 H 0.97006 * 120.00154 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.46602 * 206.96090 * 22 12 10 41 41 H 1.08997 * 109.47154 * 326.96160 * 22 12 10 42 42 H 1.08996 * 109.47225 * 59.99534 * 24 23 22 43 43 H 1.08997 * 109.46801 * 180.02562 * 24 23 22 44 44 H 1.09006 * 109.46827 * 299.99350 * 24 23 22 45 45 H 1.08993 * 109.47619 * 60.00093 * 25 23 22 46 46 H 1.09005 * 109.46351 * 180.02562 * 25 23 22 47 47 H 1.08999 * 109.47123 * 299.99620 * 25 23 22 48 48 H 1.08999 * 109.47388 * 67.79254 * 26 23 22 49 49 H 1.08999 * 109.46485 * 187.79192 * 26 23 22 50 50 H 1.08998 * 109.47615 * 307.78508 * 26 23 22 51 51 H 1.08008 * 120.00181 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0048 5 6 4.2716 -0.0002 -0.0059 6 6 3.5805 -1.1971 -0.0016 7 6 4.3340 -2.5023 -0.0034 8 1 3.6256 -3.3307 0.0010 9 6 5.2079 -2.5850 -1.2565 10 6 5.2059 -2.5806 1.2232 11 8 5.5742 -1.5633 1.7713 12 7 5.5764 -3.7811 1.7111 13 6 5.2509 -5.0039 0.9729 14 6 6.3949 -5.3577 0.0578 15 1 7.2760 -4.7339 0.0288 16 6 6.3166 -6.4779 -0.7423 17 7 5.2435 -7.2372 -0.7073 18 14 7.7343 -6.9160 -1.8770 19 1 8.8154 -5.9086 -1.7301 20 1 8.2577 -8.2590 -1.5194 21 1 7.2570 -6.9291 -3.2832 22 6 6.3044 -3.8631 2.9798 23 6 5.3063 -3.9121 4.1384 24 6 4.3235 -5.0636 3.9165 25 6 6.0600 -4.1307 5.4518 26 6 4.5374 -2.5910 4.2052 27 6 2.1980 -1.1970 0.0038 28 1 -0.3634 0.0034 1.0277 29 1 -0.3633 0.8883 -0.5167 30 1 -0.3635 -0.8916 -0.5109 31 1 1.6584 2.1326 0.0004 32 1 4.1205 2.1325 -0.0082 33 1 5.3516 -0.0003 -0.0101 34 1 5.8612 -1.7137 -1.3020 35 1 5.8126 -3.4910 -1.2185 36 1 4.5724 -2.6091 -2.1418 37 1 5.0829 -5.8193 1.6765 38 1 4.3494 -4.8424 0.3818 39 1 5.1882 -8.0251 -1.2705 40 1 6.9169 -4.7647 2.9894 41 1 6.9446 -2.9877 3.0886 42 1 4.8713 -6.0047 3.8688 43 1 3.6122 -5.0982 4.7416 44 1 3.7866 -4.9078 2.9807 45 1 6.7601 -3.3104 5.6099 46 1 5.3488 -4.1660 6.2772 47 1 6.6077 -5.0718 5.4041 48 1 3.8934 -2.5007 3.3305 49 1 3.9281 -2.5707 5.1087 50 1 5.2430 -1.7605 4.2242 51 1 1.6579 -2.1324 0.0072 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151953755.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:15 Heat of formation + Delta-G solvation = -38.744611 kcal Electronic energy + Delta-G solvation = -28392.373150 eV Core-core repulsion = 24869.606432 eV Total energy + Delta-G solvation = -3522.766718 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.02657 -38.76977 -36.70296 -34.49261 -33.70755 -32.37590 -31.94339 -29.34315 -27.65151 -26.92892 -26.74241 -26.59794 -25.90903 -23.69655 -22.86135 -21.82409 -20.64618 -18.65250 -17.78746 -16.61540 -16.42146 -16.10851 -15.52063 -14.97997 -14.77289 -14.53267 -14.29386 -13.93075 -13.68753 -13.43131 -13.33489 -12.96251 -12.82918 -12.66999 -12.47255 -12.16084 -12.07675 -11.98110 -11.79102 -11.66952 -11.45295 -11.26356 -11.22658 -11.10309 -11.06072 -10.90607 -10.84494 -10.64891 -10.44122 -10.35835 -10.34020 -10.18794 -10.01600 -9.64133 -8.90901 -8.57355 -8.39665 -8.23464 -7.60834 -6.20105 -4.25982 1.66338 1.71357 3.19716 3.29145 3.32404 3.47985 3.89355 4.18138 4.33008 4.98092 5.02944 5.11648 5.19182 5.21545 5.22861 5.34351 5.41609 5.45287 5.52914 5.64197 5.69836 5.82440 5.88520 5.90133 5.91313 5.93391 5.94881 5.96481 6.13829 6.21455 6.21940 6.33182 6.34709 6.35670 6.43372 6.47269 6.48509 6.53180 6.59314 6.72362 6.78050 6.82288 6.83122 6.89657 7.01096 7.07186 7.21592 7.34367 7.59224 7.75839 8.05925 8.40559 8.79580 9.09107 9.40738 10.86033 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.010071 B = 0.005165 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.618091 B = 5419.703422 C = 7038.496513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.097 4.097 3 C -0.129 4.129 4 C -0.125 4.125 5 C -0.082 4.082 6 C -0.057 4.057 7 C -0.067 4.067 8 H 0.099 0.901 9 C -0.146 4.146 10 C 0.526 3.474 11 O -0.564 6.564 12 N -0.590 5.590 13 C 0.232 3.768 14 C -0.533 4.533 15 H 0.062 0.938 16 C 0.067 3.933 17 N -0.889 5.889 18 Si 0.891 3.109 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.282 1.282 22 C 0.132 3.868 23 C -0.086 4.086 24 C -0.137 4.137 25 C -0.135 4.135 26 C -0.127 4.127 27 C -0.116 4.116 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.124 0.876 34 H 0.049 0.951 35 H 0.102 0.898 36 H 0.055 0.945 37 H 0.040 0.960 38 H 0.038 0.962 39 H 0.264 0.736 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.055 0.945 43 H 0.043 0.957 44 H 0.062 0.938 45 H 0.052 0.948 46 H 0.051 0.949 47 H 0.054 0.946 48 H 0.051 0.949 49 H 0.039 0.961 50 H 0.058 0.942 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.615 9.508 4.106 11.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.097 4.097 3 C -0.147 4.147 4 C -0.143 4.143 5 C -0.100 4.100 6 C -0.057 4.057 7 C -0.088 4.088 8 H 0.117 0.883 9 C -0.203 4.203 10 C 0.314 3.686 11 O -0.445 6.445 12 N -0.320 5.320 13 C 0.112 3.888 14 C -0.572 4.572 15 H 0.080 0.920 16 C -0.137 4.137 17 N -0.527 5.527 18 Si 0.719 3.281 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.208 1.208 22 C 0.008 3.992 23 C -0.087 4.087 24 C -0.194 4.194 25 C -0.193 4.193 26 C -0.184 4.184 27 C -0.134 4.134 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.142 0.858 34 H 0.068 0.932 35 H 0.120 0.880 36 H 0.074 0.926 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.070 0.930 47 H 0.073 0.927 48 H 0.070 0.930 49 H 0.058 0.942 50 H 0.077 0.923 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.500 9.828 4.308 12.058 hybrid contribution 0.716 -0.545 -0.694 1.136 sum -4.784 9.283 3.614 11.051 Atomic orbital electron populations 1.20736 0.91654 1.02339 1.01945 1.19763 0.95630 0.93155 1.01183 1.20900 0.94284 0.97037 1.02455 1.21067 0.94135 0.97881 1.01243 1.21028 1.00304 0.91444 0.97210 1.19614 0.93074 0.94492 0.98544 1.20213 0.97694 0.95419 0.95518 0.88334 1.21912 0.99582 1.04481 0.94363 1.20152 0.80571 0.83284 0.84616 1.90579 1.57476 1.34892 1.61522 1.48094 1.54797 1.07673 1.21395 1.19585 0.96609 0.81035 0.91567 1.21508 1.03086 1.09781 1.22786 0.91997 1.24914 0.95889 0.95908 0.96941 1.69923 1.27430 1.15720 1.39643 0.86543 0.82496 0.78487 0.80606 1.19628 1.20906 1.20805 1.21326 0.93284 1.02190 0.82391 1.20981 0.96446 0.96056 0.95193 1.21904 0.98555 0.97583 1.01373 1.21783 0.99847 1.01363 0.96332 1.21789 0.99833 0.96475 1.00292 1.20929 0.93504 0.97470 1.01453 0.91587 0.91977 0.91722 0.86843 0.86633 0.85779 0.93228 0.87986 0.92605 0.94155 0.94374 0.92596 0.90601 0.91247 0.92572 0.93839 0.91924 0.92904 0.92999 0.92689 0.93032 0.94234 0.92271 0.86367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 10.01 36.00 0.36 -0.80 16 2 C -0.10 -1.34 5.88 -104.63 -0.62 -1.95 16 3 C -0.13 -1.73 9.70 -39.59 -0.38 -2.11 16 4 C -0.13 -1.81 10.05 -39.59 -0.40 -2.20 16 5 C -0.08 -1.36 7.84 -39.58 -0.31 -1.67 16 6 C -0.06 -0.97 4.64 -104.62 -0.49 -1.46 16 7 C -0.07 -1.24 2.13 -92.93 -0.20 -1.44 16 8 H 0.10 1.85 6.00 -51.93 -0.31 1.54 16 9 C -0.15 -2.68 9.00 37.16 0.33 -2.34 16 10 C 0.53 10.54 5.21 -10.99 -0.06 10.49 16 11 O -0.56 -12.00 12.33 5.56 0.07 -11.93 16 12 N -0.59 -11.85 1.92 -175.06 -0.34 -12.19 16 13 C 0.23 5.20 3.74 -5.19 -0.02 5.18 16 14 C -0.53 -13.14 7.13 -34.43 -0.25 -13.39 16 15 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 16 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -23.60 13.29 55.43 0.74 -22.86 16 18 Si 0.89 20.00 29.54 -169.99 -5.02 14.98 16 19 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 C 0.13 2.41 4.61 -4.04 -0.02 2.39 16 23 C -0.09 -1.36 0.85 -154.50 -0.13 -1.49 16 24 C -0.14 -2.20 7.16 37.16 0.27 -1.93 16 25 C -0.14 -1.80 8.47 37.16 0.31 -1.48 16 26 C -0.13 -2.08 7.09 37.16 0.26 -1.82 16 27 C -0.12 -1.79 9.33 -39.58 -0.37 -2.16 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 30 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 31 H 0.11 1.23 8.06 -52.48 -0.42 0.81 16 32 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.12 2.17 6.87 -52.49 -0.36 1.81 16 34 H 0.05 0.86 7.24 -51.93 -0.38 0.49 16 35 H 0.10 2.13 5.43 -51.93 -0.28 1.84 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.04 0.95 6.31 -51.93 -0.33 0.62 16 38 H 0.04 0.89 5.74 -51.93 -0.30 0.59 16 39 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 40 H 0.08 1.40 8.05 -51.93 -0.42 0.98 16 41 H 0.07 1.31 7.42 -51.93 -0.39 0.92 16 42 H 0.06 0.92 7.88 -51.93 -0.41 0.51 16 43 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 1.11 6.30 -51.93 -0.33 0.79 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.05 0.94 6.60 -51.93 -0.34 0.60 16 49 H 0.04 0.57 8.13 -51.93 -0.42 0.15 16 50 H 0.06 1.03 7.59 -51.93 -0.39 0.64 16 51 H 0.12 1.69 7.95 -52.48 -0.42 1.28 16 LS Contribution 391.46 15.07 5.90 5.90 Total: -1.00 -26.89 391.46 -9.28 -36.17 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -8.84 Total: 6.52 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -1.79 Total: -16.59 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.40 Total: -35.05 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.07 Total: -11.93 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -26.89 -9.28 -36.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151953755.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.570 kcal (2) G-P(sol) polarization free energy of solvation -26.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds