Wall clock time and date at job start Tue Mar 31 2020 11:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38257 * 120.00671 * 2 1 4 4 C 1.38202 * 120.00370 * 180.23102 * 3 2 1 5 5 C 1.38260 * 120.00251 * 359.82086 * 4 3 2 6 6 C 1.38217 * 119.99812 * 359.97438 * 5 4 3 7 7 C 1.50698 * 120.00028 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.47032 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47271 * 299.98130 * 7 6 5 10 10 C 1.50698 * 109.47273 * 59.98133 * 7 6 5 11 11 O 1.21280 * 119.99772 * 335.29802 * 10 7 6 12 12 N 1.34779 * 120.00064 * 155.28816 * 10 7 6 13 13 C 1.46495 * 119.99811 * 6.41270 * 12 10 7 14 14 C 1.50710 * 109.46871 * 92.19503 * 13 12 10 15 15 H 1.07996 * 120.00051 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99829 * 179.97438 * 14 13 12 17 17 N 1.31509 * 119.99999 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99609 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47273 * 0.02562 * 18 16 14 20 20 H 1.48511 * 109.46939 * 120.00439 * 18 16 14 21 21 H 1.48503 * 109.47310 * 240.00118 * 18 16 14 22 22 C 1.46500 * 119.99885 * 186.41570 * 12 10 7 23 23 C 1.53004 * 109.47054 * 86.96005 * 22 12 10 24 24 C 1.53001 * 109.46964 * 54.69536 * 23 22 12 25 25 C 1.53004 * 109.46624 * 174.69419 * 23 22 12 26 26 C 1.52999 * 109.46818 * 294.69228 * 23 22 12 27 27 C 1.38217 * 119.99802 * 179.81652 * 2 1 3 28 28 H 1.09001 * 109.47353 * 270.19090 * 1 2 3 29 29 H 1.09003 * 109.47053 * 30.18514 * 1 2 3 30 30 H 1.08997 * 109.47889 * 150.18859 * 1 2 3 31 31 H 1.08004 * 119.99540 * 0.02562 * 3 2 1 32 32 H 1.08002 * 120.00327 * 179.79261 * 4 3 2 33 33 H 1.07998 * 120.00611 * 179.97438 * 5 4 3 34 34 H 1.08998 * 109.47224 * 55.48254 * 9 7 6 35 35 H 1.08996 * 109.47264 * 175.48309 * 9 7 6 36 36 H 1.09006 * 109.47461 * 295.48596 * 9 7 6 37 37 H 1.09003 * 109.47219 * 212.19186 * 13 12 10 38 38 H 1.09000 * 109.47473 * 332.19652 * 13 12 10 39 39 H 0.97006 * 120.00154 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.46602 * 206.96090 * 22 12 10 41 41 H 1.08997 * 109.47154 * 326.96160 * 22 12 10 42 42 H 1.08996 * 109.47225 * 59.99534 * 24 23 22 43 43 H 1.08997 * 109.46801 * 180.02562 * 24 23 22 44 44 H 1.09006 * 109.46827 * 299.99350 * 24 23 22 45 45 H 1.08993 * 109.47619 * 60.00093 * 25 23 22 46 46 H 1.09005 * 109.46351 * 180.02562 * 25 23 22 47 47 H 1.08999 * 109.47123 * 299.99620 * 25 23 22 48 48 H 1.08999 * 109.47388 * 67.79254 * 26 23 22 49 49 H 1.08999 * 109.46485 * 187.79192 * 26 23 22 50 50 H 1.08998 * 109.47615 * 307.78508 * 26 23 22 51 51 H 1.08008 * 120.00181 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0048 5 6 4.2716 -0.0002 -0.0059 6 6 3.5805 -1.1971 -0.0016 7 6 4.3340 -2.5023 -0.0034 8 1 3.6256 -3.3307 0.0010 9 6 5.2079 -2.5850 -1.2565 10 6 5.2059 -2.5806 1.2232 11 8 5.5742 -1.5633 1.7713 12 7 5.5764 -3.7811 1.7111 13 6 5.2509 -5.0039 0.9729 14 6 6.3949 -5.3577 0.0578 15 1 7.2760 -4.7339 0.0288 16 6 6.3166 -6.4779 -0.7423 17 7 5.2435 -7.2372 -0.7073 18 14 7.7343 -6.9160 -1.8770 19 1 8.8154 -5.9086 -1.7301 20 1 8.2577 -8.2590 -1.5194 21 1 7.2570 -6.9291 -3.2832 22 6 6.3044 -3.8631 2.9798 23 6 5.3063 -3.9121 4.1384 24 6 4.3235 -5.0636 3.9165 25 6 6.0600 -4.1307 5.4518 26 6 4.5374 -2.5910 4.2052 27 6 2.1980 -1.1970 0.0038 28 1 -0.3634 0.0034 1.0277 29 1 -0.3633 0.8883 -0.5167 30 1 -0.3635 -0.8916 -0.5109 31 1 1.6584 2.1326 0.0004 32 1 4.1205 2.1325 -0.0082 33 1 5.3516 -0.0003 -0.0101 34 1 5.8612 -1.7137 -1.3020 35 1 5.8126 -3.4910 -1.2185 36 1 4.5724 -2.6091 -2.1418 37 1 5.0829 -5.8193 1.6765 38 1 4.3494 -4.8424 0.3818 39 1 5.1882 -8.0251 -1.2705 40 1 6.9169 -4.7647 2.9894 41 1 6.9446 -2.9877 3.0886 42 1 4.8713 -6.0047 3.8688 43 1 3.6122 -5.0982 4.7416 44 1 3.7866 -4.9078 2.9807 45 1 6.7601 -3.3104 5.6099 46 1 5.3488 -4.1660 6.2772 47 1 6.6077 -5.0718 5.4041 48 1 3.8934 -2.5007 3.3305 49 1 3.9281 -2.5707 5.1087 50 1 5.2430 -1.7605 4.2242 51 1 1.6579 -2.1324 0.0072 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000151953755.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:14 Heat of formation + Delta-G solvation = -48.644509 kcal Electronic energy + Delta-G solvation = -28392.802442 eV Core-core repulsion = 24869.606432 eV Total energy + Delta-G solvation = -3523.196010 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.50930 -40.03680 -38.10902 -36.19448 -35.06153 -34.22918 -33.06345 -30.61726 -29.43074 -28.17118 -28.10297 -27.67500 -27.39033 -25.19253 -24.64351 -22.98765 -21.93298 -20.00372 -19.37269 -18.47763 -17.96888 -17.40815 -17.00165 -16.56756 -16.16198 -16.04951 -15.61524 -15.23111 -14.94455 -14.73728 -14.51556 -14.37196 -14.25409 -14.20934 -13.85275 -13.58409 -13.39112 -13.19590 -13.07743 -12.97804 -12.91422 -12.75174 -12.64849 -12.55414 -12.51014 -12.44777 -12.38445 -12.00365 -11.98319 -11.79007 -11.67764 -11.64393 -11.49097 -11.45038 -10.62560 -10.37486 -9.63755 -9.40298 -9.28888 -8.16736 -6.28499 0.48614 0.55831 1.39367 1.43971 1.52968 1.85958 2.34063 2.48177 2.94531 3.12877 3.73845 3.76988 3.90624 3.93295 4.04189 4.08190 4.11062 4.28670 4.30845 4.40649 4.56107 4.58465 4.61504 4.65425 4.76489 4.79012 4.83450 4.87343 4.90248 4.92212 4.92860 4.96562 5.01770 5.05239 5.06486 5.07195 5.20658 5.22409 5.25216 5.33008 5.34944 5.44657 5.49514 5.51498 5.64472 5.70255 5.72917 5.82000 5.95488 6.12084 6.19607 6.64749 6.88252 7.36690 7.49616 8.88240 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.010071 B = 0.005165 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.618091 B = 5419.703422 C = 7038.496513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.096 4.096 3 C -0.126 4.126 4 C -0.127 4.127 5 C -0.102 4.102 6 C -0.075 4.075 7 C -0.063 4.063 8 H 0.089 0.911 9 C -0.138 4.138 10 C 0.524 3.476 11 O -0.577 6.577 12 N -0.592 5.592 13 C 0.251 3.749 14 C -0.534 4.534 15 H 0.050 0.950 16 C 0.027 3.973 17 N -0.917 5.917 18 Si 0.946 3.054 19 H -0.273 1.273 20 H -0.280 1.280 21 H -0.278 1.278 22 C 0.129 3.871 23 C -0.081 4.081 24 C -0.131 4.131 25 C -0.129 4.129 26 C -0.116 4.116 27 C -0.130 4.130 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.147 0.853 32 H 0.138 0.862 33 H 0.107 0.893 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.029 0.971 38 H 0.027 0.973 39 H 0.266 0.734 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.049 0.951 43 H 0.065 0.935 44 H 0.038 0.962 45 H 0.057 0.943 46 H 0.070 0.930 47 H 0.059 0.941 48 H 0.026 0.974 49 H 0.061 0.939 50 H 0.045 0.955 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.628 10.754 4.670 13.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.096 4.096 3 C -0.144 4.144 4 C -0.144 4.144 5 C -0.120 4.120 6 C -0.076 4.076 7 C -0.084 4.084 8 H 0.107 0.893 9 C -0.195 4.195 10 C 0.312 3.688 11 O -0.458 6.458 12 N -0.321 5.321 13 C 0.130 3.870 14 C -0.573 4.573 15 H 0.068 0.932 16 C -0.173 4.173 17 N -0.556 5.556 18 Si 0.772 3.228 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.204 1.204 22 C 0.006 3.994 23 C -0.082 4.082 24 C -0.188 4.188 25 C -0.187 4.187 26 C -0.173 4.173 27 C -0.149 4.149 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.165 0.835 32 H 0.156 0.844 33 H 0.125 0.875 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.047 0.953 38 H 0.045 0.955 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.057 0.943 45 H 0.076 0.924 46 H 0.089 0.911 47 H 0.078 0.922 48 H 0.045 0.955 49 H 0.080 0.920 50 H 0.064 0.936 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.507 11.079 4.881 13.744 hybrid contribution 0.999 -0.861 -0.852 1.570 sum -5.508 10.218 4.029 12.287 Atomic orbital electron populations 1.20799 0.89108 1.03650 1.02944 1.20176 0.97521 0.92505 0.99435 1.21306 0.93943 0.98307 1.00832 1.21352 0.94988 0.97822 1.00281 1.20983 0.99633 0.92412 0.99011 1.19546 0.93832 0.93693 1.00483 1.20131 0.97259 0.96361 0.94614 0.89326 1.21795 0.99522 1.03124 0.95097 1.20436 0.80465 0.82919 0.84938 1.90557 1.58090 1.35137 1.62045 1.48067 1.54999 1.07051 1.21984 1.19207 0.95464 0.81454 0.90874 1.21618 1.03078 1.09508 1.23071 0.93202 1.25511 0.97782 0.95902 0.98124 1.70002 1.28847 1.16205 1.40547 0.85682 0.79956 0.78058 0.79056 1.19719 1.20577 1.20403 1.21453 0.93879 1.01452 0.82663 1.20953 0.95970 0.95769 0.95558 1.21827 0.98723 0.97247 1.01023 1.21737 1.00114 1.01869 0.94998 1.21668 0.99324 0.96146 1.00171 1.21092 0.92958 0.98724 1.02079 0.90603 0.89894 0.91270 0.83529 0.84407 0.87532 0.92859 0.90653 0.91272 0.95334 0.95537 0.92442 0.91157 0.92011 0.93146 0.91597 0.94322 0.92375 0.91099 0.92162 0.95530 0.91955 0.93563 0.86027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.96 10.01 71.23 0.71 -1.24 16 2 C -0.10 -2.45 5.88 -19.87 -0.12 -2.57 16 3 C -0.13 -3.04 9.70 22.27 0.22 -2.83 16 4 C -0.13 -3.47 10.05 22.27 0.22 -3.24 16 5 C -0.10 -3.44 7.84 22.27 0.17 -3.26 16 6 C -0.08 -2.62 4.64 -19.87 -0.09 -2.71 16 7 C -0.06 -2.41 2.13 -12.29 -0.03 -2.43 16 8 H 0.09 3.52 6.00 -2.38 -0.01 3.51 16 9 C -0.14 -5.25 9.00 71.98 0.65 -4.61 16 10 C 0.52 21.86 5.21 87.66 0.46 22.32 16 11 O -0.58 -25.36 12.33 -3.03 -0.04 -25.40 16 12 N -0.59 -24.73 1.92 -826.14 -1.59 -26.31 16 13 C 0.25 11.71 3.74 85.64 0.32 12.03 16 14 C -0.53 -27.10 7.13 25.60 0.18 -26.92 16 15 H 0.05 2.61 7.81 -2.91 -0.02 2.59 16 16 C 0.03 1.41 5.46 84.66 0.46 1.87 16 17 N -0.92 -49.43 13.29 21.45 0.28 -49.14 16 18 Si 0.95 41.43 29.54 68.60 2.03 43.46 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 20 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 22 C 0.13 4.81 4.61 86.38 0.40 5.20 16 23 C -0.08 -2.55 0.85 -52.18 -0.04 -2.59 16 24 C -0.13 -4.17 7.16 71.98 0.52 -3.65 16 25 C -0.13 -3.20 8.47 71.98 0.61 -2.59 16 26 C -0.12 -3.75 7.09 71.98 0.51 -3.24 16 27 C -0.13 -4.00 9.33 22.27 0.21 -3.79 16 28 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.08 1.17 8.09 -2.39 -0.02 1.15 16 30 H 0.07 1.20 8.09 -2.39 -0.02 1.18 16 31 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 32 H 0.14 3.06 8.06 -2.91 -0.02 3.03 16 33 H 0.11 3.87 6.87 -2.91 -0.02 3.85 16 34 H 0.05 1.94 7.24 -2.39 -0.02 1.92 16 35 H 0.07 3.27 5.43 -2.39 -0.01 3.26 16 36 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 37 H 0.03 1.40 6.31 -2.39 -0.02 1.39 16 38 H 0.03 1.31 5.74 -2.39 -0.01 1.30 16 39 H 0.27 13.67 8.31 -92.70 -0.77 12.90 16 40 H 0.07 2.66 8.05 -2.39 -0.02 2.65 16 41 H 0.06 2.38 7.42 -2.39 -0.02 2.37 16 42 H 0.05 1.64 7.88 -2.39 -0.02 1.62 16 43 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.04 1.40 6.30 -2.38 -0.02 1.38 16 45 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 47 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.03 0.97 6.60 -2.39 -0.02 0.95 16 49 H 0.06 1.71 8.13 -2.39 -0.02 1.69 16 50 H 0.05 1.60 7.59 -2.39 -0.02 1.58 16 51 H 0.12 3.52 7.95 -2.91 -0.02 3.49 16 Total: -1.00 -58.44 391.46 6.93 -51.51 By element: Atomic # 1 Polarization: 29.26 SS G_CDS: 0.89 Total: 30.14 kcal Atomic # 6 Polarization: -29.62 SS G_CDS: 5.36 Total: -24.26 kcal Atomic # 7 Polarization: -74.15 SS G_CDS: -1.30 Total: -75.45 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -0.04 Total: -25.40 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -58.44 6.93 -51.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151953755.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.864 kcal (2) G-P(sol) polarization free energy of solvation -58.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds