Wall clock time and date at job start Tue Mar 31 2020 11:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38264 * 120.00120 * 2 1 4 4 C 1.38204 * 119.99982 * 180.25512 * 3 2 1 5 5 C 1.38265 * 120.00110 * 359.79437 * 4 3 2 6 6 C 1.38208 * 120.00034 * 359.95592 * 5 4 3 7 7 C 1.50697 * 120.00121 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47553 * 180.02562 * 7 6 5 9 9 C 1.53007 * 109.47384 * 60.01354 * 7 6 5 10 10 C 1.50703 * 109.46928 * 300.01774 * 7 6 5 11 11 O 1.21282 * 119.99709 * 17.98169 * 10 7 6 12 12 N 1.34775 * 120.00024 * 197.98821 * 10 7 6 13 13 C 1.46498 * 120.00141 * 2.94193 * 12 10 7 14 14 C 1.50697 * 109.47518 * 83.99296 * 13 12 10 15 15 H 1.08004 * 119.99584 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00303 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99879 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00173 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47027 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47210 * 120.00452 * 18 16 14 21 21 H 1.48503 * 109.47142 * 240.00670 * 18 16 14 22 22 C 1.46503 * 119.99967 * 182.93463 * 12 10 7 23 23 C 1.53002 * 109.46773 * 92.22802 * 22 12 10 24 24 C 1.52999 * 109.47276 * 62.18638 * 23 22 12 25 25 C 1.52992 * 109.47151 * 182.19216 * 23 22 12 26 26 C 1.53004 * 109.47109 * 302.18948 * 23 22 12 27 27 C 1.38215 * 120.00127 * 179.77001 * 2 1 3 28 28 H 1.09000 * 109.47174 * 270.22794 * 1 2 3 29 29 H 1.08997 * 109.47255 * 30.23420 * 1 2 3 30 30 H 1.09006 * 109.46947 * 150.22906 * 1 2 3 31 31 H 1.08000 * 119.99516 * 0.02562 * 3 2 1 32 32 H 1.07999 * 119.99773 * 179.76250 * 4 3 2 33 33 H 1.07997 * 119.99619 * 179.97438 * 5 4 3 34 34 H 1.08997 * 109.46829 * 295.76897 * 9 7 6 35 35 H 1.08999 * 109.46660 * 55.76936 * 9 7 6 36 36 H 1.09003 * 109.46775 * 175.76386 * 9 7 6 37 37 H 1.08999 * 109.47301 * 204.00155 * 13 12 10 38 38 H 1.09001 * 109.46930 * 323.99723 * 13 12 10 39 39 H 0.97002 * 119.99995 * 179.97438 * 17 16 14 40 40 H 1.08992 * 109.47226 * 212.22678 * 22 12 10 41 41 H 1.08995 * 109.47351 * 332.23005 * 22 12 10 42 42 H 1.09002 * 109.46752 * 59.99841 * 24 23 22 43 43 H 1.09001 * 109.47464 * 180.02562 * 24 23 22 44 44 H 1.09001 * 109.47154 * 300.00592 * 24 23 22 45 45 H 1.09000 * 109.47424 * 59.99713 * 25 23 22 46 46 H 1.09001 * 109.46976 * 180.02562 * 25 23 22 47 47 H 1.09003 * 109.47123 * 299.99732 * 25 23 22 48 48 H 1.09000 * 109.47393 * 65.79726 * 26 23 22 49 49 H 1.08998 * 109.47338 * 185.79245 * 26 23 22 50 50 H 1.09003 * 109.46807 * 305.79682 * 26 23 22 51 51 H 1.08003 * 119.99919 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0053 5 6 4.2717 0.0000 -0.0064 6 6 3.5807 -1.1970 -0.0011 7 6 4.3341 -2.5020 -0.0017 8 1 3.6259 -3.3306 0.0024 9 6 5.2187 -2.5809 1.2443 10 6 5.1958 -2.5841 -1.2354 11 8 5.4584 -1.5779 -1.8596 12 7 5.6743 -3.7755 -1.6451 13 6 5.3046 -4.9989 -0.9290 14 6 3.9760 -5.4964 -1.4372 15 1 3.4589 -4.9555 -2.2160 16 6 3.4210 -6.6425 -0.9086 17 7 4.0509 -7.3013 0.0394 18 14 1.7744 -7.2595 -1.5390 19 1 1.2765 -6.3465 -2.5991 20 1 1.9390 -8.6248 -2.0994 21 1 0.7988 -7.2980 -0.4200 22 6 6.5642 -3.8472 -2.8067 23 6 8.0192 -3.7666 -2.3401 24 6 8.3331 -4.9631 -1.4398 25 6 8.9467 -3.7864 -3.5567 26 6 8.2326 -2.4694 -1.5573 27 6 2.1981 -1.1970 0.0048 28 1 -0.3633 0.0041 1.0277 29 1 -0.3633 0.8878 -0.5174 30 1 -0.3633 -0.8921 -0.5103 31 1 1.6583 2.1327 0.0004 32 1 4.1203 2.1327 -0.0092 33 1 5.3516 0.0000 -0.0109 34 1 5.9754 -1.7975 1.2027 35 1 4.6047 -2.4462 2.1348 36 1 5.7060 -3.5552 1.2828 37 1 6.0657 -5.7613 -1.0951 38 1 5.2293 -4.7869 0.1375 39 1 3.6603 -8.1075 0.4116 40 1 6.4024 -4.7891 -3.3307 41 1 6.3517 -3.0161 -3.4791 42 1 8.1811 -5.8872 -1.9975 43 1 9.3695 -4.9054 -1.1070 44 1 7.6723 -4.9489 -0.5730 45 1 8.7230 -2.9340 -4.1981 46 1 9.9832 -3.7294 -3.2243 47 1 8.7947 -4.7105 -4.1144 48 1 7.6489 -2.5000 -0.6372 49 1 9.2895 -2.3618 -1.3135 50 1 7.9113 -1.6223 -2.1634 51 1 1.6581 -2.1323 0.0081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000151953829.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:17 Heat of formation + Delta-G solvation = -49.984104 kcal Electronic energy + Delta-G solvation = -28377.754159 eV Core-core repulsion = 24854.500060 eV Total energy + Delta-G solvation = -3523.254099 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.50672 -40.03470 -38.11934 -36.15716 -35.10473 -34.23618 -33.06503 -30.67315 -29.50521 -28.12648 -28.09569 -27.66357 -27.27031 -25.51965 -24.44729 -22.96290 -21.91916 -19.99943 -19.36268 -18.67697 -17.86176 -17.37266 -16.96365 -16.44833 -16.35738 -16.02639 -15.60493 -15.22273 -14.90353 -14.86475 -14.54020 -14.48928 -14.21146 -14.05068 -13.87393 -13.74055 -13.40053 -13.17973 -13.07341 -13.01373 -12.98030 -12.79919 -12.63778 -12.53333 -12.52071 -12.43359 -12.36464 -12.03483 -11.95980 -11.81083 -11.67670 -11.63783 -11.51244 -11.42680 -10.64730 -10.38292 -9.63539 -9.39436 -9.30377 -8.19154 -6.32728 0.49354 0.56017 1.36676 1.40818 1.50411 1.86588 2.33552 2.47232 2.94942 3.10016 3.72374 3.75116 3.90721 3.94841 4.07027 4.08344 4.13259 4.28081 4.35581 4.39431 4.54816 4.58282 4.60469 4.66380 4.73183 4.76990 4.84027 4.85038 4.89052 4.89620 4.94446 4.95104 5.00254 5.03846 5.07168 5.08693 5.11475 5.20636 5.23584 5.30074 5.35678 5.39034 5.51151 5.53927 5.63377 5.68555 5.72755 5.83175 5.95286 6.12172 6.20103 6.61624 6.87320 7.34836 7.49454 8.85313 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.008666 B = 0.006070 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3230.411329 B = 4612.047979 C = 7057.909362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.099 4.099 3 C -0.126 4.126 4 C -0.126 4.126 5 C -0.099 4.099 6 C -0.074 4.074 7 C -0.072 4.072 8 H 0.092 0.908 9 C -0.125 4.125 10 C 0.526 3.474 11 O -0.579 6.579 12 N -0.591 5.591 13 C 0.247 3.753 14 C -0.546 4.546 15 H 0.043 0.957 16 C 0.027 3.973 17 N -0.915 5.915 18 Si 0.946 3.054 19 H -0.276 1.276 20 H -0.278 1.278 21 H -0.276 1.276 22 C 0.126 3.874 23 C -0.079 4.079 24 C -0.136 4.136 25 C -0.130 4.130 26 C -0.122 4.122 27 C -0.135 4.135 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.148 0.852 32 H 0.142 0.858 33 H 0.112 0.888 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.267 0.733 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.049 0.951 43 H 0.067 0.933 44 H 0.042 0.958 45 H 0.055 0.945 46 H 0.071 0.929 47 H 0.059 0.941 48 H 0.032 0.968 49 H 0.064 0.936 50 H 0.046 0.954 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.056 11.567 0.867 11.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.099 4.099 3 C -0.144 4.144 4 C -0.143 4.143 5 C -0.117 4.117 6 C -0.074 4.074 7 C -0.093 4.093 8 H 0.110 0.890 9 C -0.182 4.182 10 C 0.315 3.685 11 O -0.461 6.461 12 N -0.320 5.320 13 C 0.126 3.874 14 C -0.585 4.585 15 H 0.062 0.938 16 C -0.173 4.173 17 N -0.554 5.554 18 Si 0.772 3.228 19 H -0.200 1.200 20 H -0.203 1.203 21 H -0.201 1.201 22 C 0.003 3.997 23 C -0.080 4.080 24 C -0.193 4.193 25 C -0.188 4.188 26 C -0.179 4.179 27 C -0.153 4.153 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.165 0.835 32 H 0.160 0.840 33 H 0.130 0.870 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.086 0.914 44 H 0.061 0.939 45 H 0.074 0.926 46 H 0.090 0.910 47 H 0.078 0.922 48 H 0.051 0.949 49 H 0.083 0.917 50 H 0.065 0.935 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.186 11.885 0.650 12.102 hybrid contribution -0.905 -1.097 -0.336 1.461 sum 1.281 10.788 0.314 10.868 Atomic orbital electron populations 1.20802 0.89393 1.03272 1.03117 1.20170 0.97429 0.92609 0.99645 1.21297 0.94140 0.98047 1.00866 1.21378 0.94839 0.97986 1.00136 1.20961 0.99707 0.92104 0.98918 1.19529 0.93669 0.93955 1.00275 1.20217 0.97785 0.96804 0.94511 0.89018 1.21673 0.99040 1.02135 0.95386 1.20409 0.79442 0.82717 0.85967 1.90556 1.61613 1.35791 1.58148 1.48059 1.46255 1.07459 1.30277 1.19311 0.94514 0.81423 0.92162 1.21725 1.05920 1.09746 1.21063 0.93827 1.25518 1.00419 0.96425 0.94964 1.69994 1.39874 1.18303 1.27217 0.85681 0.80431 0.78226 0.78425 1.20034 1.20319 1.20108 1.21481 0.89135 1.01305 0.87828 1.20909 0.94213 0.95957 0.96940 1.21905 1.01314 0.96862 0.99215 1.21742 0.98957 1.01970 0.96127 1.21703 1.00788 0.96296 0.99102 1.21103 0.93454 0.98499 1.02209 0.90058 0.89925 0.92067 0.83458 0.84005 0.86983 0.91914 0.90608 0.92147 0.94774 0.94819 0.92343 0.91605 0.91865 0.93204 0.91448 0.93866 0.92586 0.91000 0.92205 0.94905 0.91673 0.93499 0.86898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.29 10.01 71.24 0.71 -1.58 16 2 C -0.10 -2.75 5.88 -19.86 -0.12 -2.87 16 3 C -0.13 -3.18 9.70 22.27 0.22 -2.96 16 4 C -0.13 -3.44 10.05 22.27 0.22 -3.22 16 5 C -0.10 -3.28 7.89 22.27 0.18 -3.11 16 6 C -0.07 -2.68 4.58 -19.87 -0.09 -2.77 16 7 C -0.07 -2.81 2.07 -12.28 -0.03 -2.84 16 8 H 0.09 4.04 6.33 -2.39 -0.02 4.03 16 9 C -0.13 -4.24 8.71 71.98 0.63 -3.61 16 10 C 0.53 22.14 5.21 87.66 0.46 22.59 16 11 O -0.58 -25.65 12.70 -3.04 -0.04 -25.69 16 12 N -0.59 -24.86 2.01 -826.17 -1.66 -26.52 16 13 C 0.25 11.59 3.59 85.63 0.31 11.90 16 14 C -0.55 -28.56 8.49 25.60 0.22 -28.34 16 15 H 0.04 2.38 7.81 -2.91 -0.02 2.36 16 16 C 0.03 1.44 5.46 84.65 0.46 1.90 16 17 N -0.91 -49.69 13.29 21.45 0.28 -49.41 16 18 Si 0.95 42.08 29.54 68.60 2.03 44.11 16 19 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 20 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 21 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 22 C 0.13 4.70 4.59 86.38 0.40 5.10 16 23 C -0.08 -2.43 0.85 -52.18 -0.04 -2.47 16 24 C -0.14 -4.22 7.26 71.98 0.52 -3.70 16 25 C -0.13 -3.18 8.47 71.98 0.61 -2.57 16 26 C -0.12 -3.77 7.17 71.98 0.52 -3.25 16 27 C -0.13 -4.58 9.33 22.27 0.21 -4.37 16 28 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.08 1.39 8.09 -2.39 -0.02 1.38 16 30 H 0.06 1.33 8.09 -2.38 -0.02 1.31 16 31 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 32 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 33 H 0.11 3.82 7.12 -2.91 -0.02 3.80 16 34 H 0.06 1.97 7.54 -2.39 -0.02 1.95 16 35 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.06 2.16 6.15 -2.39 -0.01 2.15 16 37 H 0.03 1.68 6.05 -2.39 -0.01 1.66 16 38 H 0.03 1.64 4.88 -2.39 -0.01 1.63 16 39 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 40 H 0.07 2.51 8.09 -2.39 -0.02 2.49 16 41 H 0.06 2.46 7.32 -2.39 -0.02 2.44 16 42 H 0.05 1.57 8.12 -2.39 -0.02 1.55 16 43 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.04 1.54 5.88 -2.39 -0.01 1.53 16 45 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.07 1.49 8.14 -2.39 -0.02 1.48 16 47 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.03 1.12 6.82 -2.39 -0.02 1.11 16 49 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 50 H 0.05 1.57 7.43 -2.39 -0.02 1.55 16 51 H 0.11 3.89 7.95 -2.91 -0.02 3.87 16 Total: -1.00 -59.89 393.24 6.87 -53.02 By element: Atomic # 1 Polarization: 29.78 SS G_CDS: 0.88 Total: 30.67 kcal Atomic # 6 Polarization: -31.55 SS G_CDS: 5.38 Total: -26.17 kcal Atomic # 7 Polarization: -74.56 SS G_CDS: -1.37 Total: -75.93 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.04 Total: -25.69 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -59.89 6.87 -53.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151953829.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.036 kcal (2) G-P(sol) polarization free energy of solvation -59.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds