Wall clock time and date at job start Tue Mar 31 2020 12:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46925 * 2 1 4 4 C 1.52996 * 109.47281 * 239.99623 * 2 1 3 5 5 C 1.53005 * 109.46893 * 119.99426 * 2 1 3 6 6 C 1.53005 * 109.47059 * 60.00520 * 5 2 1 7 7 C 1.52991 * 109.47107 * 180.02562 * 6 5 2 8 8 C 1.50699 * 109.47399 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99790 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00373 * 179.72123 * 8 7 6 11 11 C 1.46496 * 120.00057 * 175.34801 * 10 8 7 12 12 H 1.09005 * 109.47372 * 38.57372 * 11 10 8 13 13 C 1.53002 * 109.47282 * 158.57282 * 11 10 8 14 14 C 1.50704 * 109.47218 * 294.53300 * 13 11 10 15 15 H 1.08003 * 119.99874 * 355.15140 * 14 13 11 16 16 C 1.37874 * 119.99783 * 175.14566 * 14 13 11 17 17 N 1.31517 * 119.99492 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 120.00438 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47440 * 89.99604 * 18 16 14 20 20 H 1.48503 * 109.47286 * 209.99906 * 18 16 14 21 21 H 1.48505 * 109.46924 * 329.99710 * 18 16 14 22 22 C 1.50699 * 109.47332 * 278.57507 * 11 10 8 23 23 C 1.38236 * 119.99813 * 319.72674 * 22 11 10 24 24 C 1.38237 * 119.99665 * 179.79090 * 23 22 11 25 25 C 1.38235 * 120.00100 * 0.43582 * 24 23 22 26 26 C 1.38231 * 120.00009 * 359.81858 * 25 24 23 27 27 C 1.38234 * 120.00305 * 359.97259 * 26 25 24 28 28 H 1.09000 * 109.47342 * 299.99910 * 1 2 3 29 29 H 1.08993 * 109.46925 * 60.00562 * 1 2 3 30 30 H 1.09003 * 109.47095 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47028 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47194 * 299.99452 * 3 2 1 33 33 H 1.09000 * 109.47513 * 59.99667 * 3 2 1 34 34 H 1.09003 * 109.47046 * 300.00018 * 4 2 1 35 35 H 1.08993 * 109.47292 * 60.00040 * 4 2 1 36 36 H 1.08997 * 109.47162 * 180.02562 * 4 2 1 37 37 H 1.09000 * 109.47238 * 300.00145 * 5 2 1 38 38 H 1.08997 * 109.47072 * 180.02562 * 5 2 1 39 39 H 1.09000 * 109.46926 * 59.99489 * 6 5 2 40 40 H 1.09005 * 109.46594 * 299.99386 * 6 5 2 41 41 H 1.09000 * 109.47661 * 59.99919 * 7 6 5 42 42 H 1.09004 * 109.47264 * 299.99863 * 7 6 5 43 43 H 0.96995 * 120.00029 * 355.34784 * 10 8 7 44 44 H 1.09003 * 109.46828 * 54.53346 * 13 11 10 45 45 H 1.08995 * 109.47196 * 174.53361 * 13 11 10 46 46 H 0.97000 * 119.99880 * 180.02562 * 17 16 14 47 47 H 1.07997 * 120.00213 * 359.97438 * 23 22 11 48 48 H 1.07998 * 119.99812 * 180.27578 * 24 23 22 49 49 H 1.08001 * 119.99769 * 179.83788 * 25 24 23 50 50 H 1.08006 * 119.99785 * 180.02562 * 26 25 24 51 51 H 1.07999 * 120.00420 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0400 -0.7212 1.2494 6 6 1.5300 -2.1637 1.2494 7 6 2.0394 -2.8846 2.4990 8 6 1.5367 -4.3053 2.4994 9 8 0.8392 -4.7020 1.5900 10 7 1.8663 -5.1366 3.5078 11 6 1.2960 -6.4849 3.5618 12 1 1.2397 -6.8962 2.5539 13 6 2.1837 -7.3798 4.4290 14 6 3.5254 -7.5516 3.7646 15 1 3.6990 -7.1363 2.7828 16 6 4.5313 -8.2389 4.4101 17 7 5.7021 -8.3892 3.8301 18 14 4.2310 -8.9577 6.1079 19 1 3.7101 -10.3420 5.9743 20 1 5.5061 -8.9799 6.8687 21 1 3.2379 -8.1227 6.8303 22 6 -0.0872 -6.4218 4.1565 23 6 -0.3415 -5.5860 5.2279 24 6 -1.6113 -5.5249 5.7707 25 6 -2.6248 -6.3063 5.2479 26 6 -2.3693 -7.1460 4.1800 27 6 -1.1005 -7.2039 3.6343 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6767 -1.7490 -1.2491 35 1 1.6768 -0.2076 -2.1391 36 1 3.1300 -0.7217 -1.2489 37 1 1.6766 -0.2073 2.1393 38 1 3.1299 -0.7208 1.2496 39 1 1.8934 -2.6775 0.3594 40 1 0.4400 -2.1637 1.2494 41 1 1.6757 -2.3707 3.3887 42 1 3.1294 -2.8846 2.4996 43 1 2.4812 -4.8421 4.1977 44 1 2.3190 -6.9186 5.4073 45 1 1.7103 -8.3542 4.5490 46 1 6.4097 -8.8731 4.2840 47 1 0.4513 -4.9786 5.6389 48 1 -1.8110 -4.8687 6.6048 49 1 -3.6163 -6.2605 5.6737 50 1 -3.1612 -7.7561 3.7713 51 1 -0.9007 -7.8602 2.8002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153257488.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:57 Heat of formation + Delta-G solvation = -53.639111 kcal Electronic energy + Delta-G solvation = -26692.473285 eV Core-core repulsion = 23169.060693 eV Total energy + Delta-G solvation = -3523.412592 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.72970 -38.67405 -37.92848 -35.29321 -32.96566 -32.63807 -31.15380 -30.54607 -29.33219 -27.51203 -27.36371 -27.15836 -24.91575 -22.44388 -22.12293 -21.77748 -20.04447 -19.63854 -18.71399 -17.15766 -16.54125 -16.34419 -15.71775 -15.52434 -14.92173 -14.81898 -14.47638 -14.37335 -14.13683 -13.93654 -13.69697 -13.12645 -13.10625 -12.94889 -12.62919 -12.60902 -12.41301 -12.19839 -11.93850 -11.80063 -11.67474 -11.62821 -11.59965 -11.37196 -11.09591 -10.88119 -10.73680 -10.67342 -10.53760 -10.48323 -10.34892 -10.12179 -9.85471 -9.37012 -9.26161 -8.65062 -8.61299 -8.44106 -8.28842 -6.12567 -4.12377 1.67771 1.70476 3.18939 3.24585 3.32726 3.34463 3.75547 4.15446 4.36451 4.63296 4.71241 4.72596 5.11752 5.15678 5.17787 5.18419 5.20417 5.23704 5.29993 5.42918 5.45519 5.49547 5.51407 5.67509 5.67545 5.71463 5.77638 5.81502 5.82085 5.83443 5.84278 5.89855 6.00003 6.06916 6.13577 6.19742 6.24216 6.24567 6.31541 6.42089 6.43940 6.51125 6.73569 6.75993 6.84508 6.92924 7.06610 7.30526 7.36414 7.63869 8.15565 8.42956 8.81972 8.93295 9.48144 11.00214 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.010059 B = 0.003614 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.985139 B = 7745.855275 C = 9807.451207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.070 4.070 3 C -0.141 4.141 4 C -0.146 4.146 5 C -0.109 4.109 6 C -0.105 4.105 7 C -0.142 4.142 8 C 0.511 3.489 9 O -0.551 6.551 10 N -0.704 5.704 11 C 0.194 3.806 12 H 0.089 0.911 13 C -0.015 4.015 14 C -0.520 4.520 15 H 0.076 0.924 16 C 0.071 3.929 17 N -0.898 5.898 18 Si 0.875 3.125 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.265 1.265 22 C -0.075 4.075 23 C -0.109 4.109 24 C -0.125 4.125 25 C -0.134 4.134 26 C -0.122 4.122 27 C -0.108 4.108 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.050 0.950 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.401 0.599 44 H 0.025 0.975 45 H 0.028 0.972 46 H 0.264 0.736 47 H 0.117 0.883 48 H 0.115 0.885 49 H 0.114 0.886 50 H 0.117 0.883 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.309 15.212 -1.070 18.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.070 4.070 3 C -0.198 4.198 4 C -0.203 4.203 5 C -0.147 4.147 6 C -0.143 4.143 7 C -0.182 4.182 8 C 0.297 3.703 9 O -0.429 6.429 10 N -0.353 5.353 11 C 0.089 3.911 12 H 0.107 0.893 13 C -0.052 4.052 14 C -0.558 4.558 15 H 0.094 0.906 16 C -0.131 4.131 17 N -0.536 5.536 18 Si 0.702 3.298 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.189 1.189 22 C -0.076 4.076 23 C -0.128 4.128 24 C -0.143 4.143 25 C -0.152 4.152 26 C -0.140 4.140 27 C -0.126 4.126 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.236 0.764 44 H 0.043 0.957 45 H 0.046 0.954 46 H 0.074 0.926 47 H 0.135 0.865 48 H 0.133 0.867 49 H 0.132 0.868 50 H 0.135 0.865 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.618 14.844 -1.689 18.925 hybrid contribution 0.348 -0.392 1.343 1.442 sum -11.270 14.452 -0.346 18.330 Atomic orbital electron populations 1.21942 0.94736 1.02288 1.01219 1.20531 0.95679 0.95106 0.95660 1.21874 1.00898 0.95612 1.01415 1.21948 1.00940 1.00853 0.96549 1.21673 1.00583 0.95420 0.97013 1.21445 1.01506 0.94079 0.97265 1.21686 1.02712 0.93171 1.00619 1.20608 0.80293 0.87615 0.81754 1.90646 1.39152 1.77553 1.35551 1.45937 1.47482 1.14367 1.27504 1.19911 0.87595 0.82805 1.00761 0.89280 1.19881 0.95449 0.94606 0.95288 1.21020 0.94252 1.35641 1.04876 0.90635 1.24989 0.94979 0.95547 0.97607 1.69908 1.03496 1.41890 1.38330 0.86859 0.77722 0.80179 0.85004 1.20220 1.21348 1.18932 1.20590 0.96460 0.95394 0.95178 1.20933 0.96569 0.99092 0.96177 1.21052 0.93417 0.99788 1.00087 1.21014 0.98799 0.97832 0.97569 1.21062 0.96744 0.99314 0.96929 1.21049 0.92545 0.99224 0.99799 0.92902 0.93090 0.91916 0.92748 0.92919 0.92857 0.91857 0.93094 0.92727 0.92119 0.91906 0.90918 0.91160 0.89539 0.89054 0.76416 0.95679 0.95411 0.92632 0.86499 0.86694 0.86775 0.86518 0.86055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.12 37.16 0.30 -1.04 16 2 C -0.07 -0.65 0.80 -154.51 -0.12 -0.77 16 3 C -0.14 -1.14 8.47 37.16 0.31 -0.82 16 4 C -0.15 -1.41 8.12 37.16 0.30 -1.11 16 5 C -0.11 -1.08 4.27 -26.73 -0.11 -1.19 16 6 C -0.11 -1.29 3.80 -26.73 -0.10 -1.39 16 7 C -0.14 -1.82 5.70 -27.89 -0.16 -1.98 16 8 C 0.51 8.89 7.73 -10.99 -0.08 8.80 16 9 O -0.55 -11.48 15.68 5.55 0.09 -11.39 16 10 N -0.70 -12.47 4.09 -54.93 -0.22 -12.70 16 11 C 0.19 3.84 2.11 -69.08 -0.15 3.70 16 12 H 0.09 1.98 7.49 -51.93 -0.39 1.59 16 13 C -0.01 -0.33 3.56 -27.88 -0.10 -0.43 16 14 C -0.52 -13.91 9.40 -34.44 -0.32 -14.23 16 15 H 0.08 2.23 7.99 -52.48 -0.42 1.82 16 16 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 17 N -0.90 -26.69 13.96 55.43 0.77 -25.91 16 18 Si 0.88 20.77 27.57 -169.99 -4.69 16.08 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.26 -5.98 6.41 56.52 0.36 -5.62 16 22 C -0.07 -1.33 4.86 -104.62 -0.51 -1.84 16 23 C -0.11 -1.74 9.32 -39.58 -0.37 -2.11 16 24 C -0.13 -1.76 10.05 -39.58 -0.40 -2.15 16 25 C -0.13 -1.81 10.05 -39.59 -0.40 -2.21 16 26 C -0.12 -1.76 10.05 -39.59 -0.40 -2.16 16 27 C -0.11 -1.80 9.67 -39.58 -0.38 -2.18 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.65 6.43 -51.93 -0.33 0.32 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.69 6.43 -51.93 -0.33 0.35 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.07 1.00 6.39 -51.93 -0.33 0.67 16 40 H 0.07 0.93 6.39 -51.93 -0.33 0.59 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.40 6.50 8.57 -40.82 -0.35 6.15 16 44 H 0.02 0.55 6.86 -51.93 -0.36 0.19 16 45 H 0.03 0.63 7.81 -51.93 -0.41 0.23 16 46 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 47 H 0.12 1.72 7.73 -52.49 -0.41 1.31 16 48 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 49 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 50 H 0.12 1.38 8.06 -52.48 -0.42 0.95 16 51 H 0.12 1.95 8.04 -52.49 -0.42 1.53 16 LS Contribution 405.62 15.07 6.11 6.11 Total: -1.00 -31.31 405.62 -9.89 -41.20 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -9.17 Total: 7.87 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: -2.78 Total: -21.26 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.55 Total: -38.61 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.09 Total: -11.39 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.69 Total: 16.08 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.31 -9.89 -41.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153257488.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.440 kcal (2) G-P(sol) polarization free energy of solvation -31.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds