Wall clock time and date at job start Tue Mar 31 2020 12:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46925 * 2 1 4 4 C 1.52996 * 109.47281 * 239.99623 * 2 1 3 5 5 C 1.53005 * 109.46893 * 119.99426 * 2 1 3 6 6 C 1.53005 * 109.47059 * 60.00520 * 5 2 1 7 7 C 1.52991 * 109.47107 * 180.02562 * 6 5 2 8 8 C 1.50699 * 109.47399 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99790 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00373 * 179.72123 * 8 7 6 11 11 C 1.46496 * 120.00057 * 175.34801 * 10 8 7 12 12 H 1.09005 * 109.47372 * 38.57372 * 11 10 8 13 13 C 1.53002 * 109.47282 * 158.57282 * 11 10 8 14 14 C 1.50704 * 109.47218 * 294.53300 * 13 11 10 15 15 H 1.08003 * 119.99874 * 355.15140 * 14 13 11 16 16 C 1.37874 * 119.99783 * 175.14566 * 14 13 11 17 17 N 1.31517 * 119.99492 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 120.00438 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47440 * 89.99604 * 18 16 14 20 20 H 1.48503 * 109.47286 * 209.99906 * 18 16 14 21 21 H 1.48505 * 109.46924 * 329.99710 * 18 16 14 22 22 C 1.50699 * 109.47332 * 278.57507 * 11 10 8 23 23 C 1.38236 * 119.99813 * 319.72674 * 22 11 10 24 24 C 1.38237 * 119.99665 * 179.79090 * 23 22 11 25 25 C 1.38235 * 120.00100 * 0.43582 * 24 23 22 26 26 C 1.38231 * 120.00009 * 359.81858 * 25 24 23 27 27 C 1.38234 * 120.00305 * 359.97259 * 26 25 24 28 28 H 1.09000 * 109.47342 * 299.99910 * 1 2 3 29 29 H 1.08993 * 109.46925 * 60.00562 * 1 2 3 30 30 H 1.09003 * 109.47095 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47028 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47194 * 299.99452 * 3 2 1 33 33 H 1.09000 * 109.47513 * 59.99667 * 3 2 1 34 34 H 1.09003 * 109.47046 * 300.00018 * 4 2 1 35 35 H 1.08993 * 109.47292 * 60.00040 * 4 2 1 36 36 H 1.08997 * 109.47162 * 180.02562 * 4 2 1 37 37 H 1.09000 * 109.47238 * 300.00145 * 5 2 1 38 38 H 1.08997 * 109.47072 * 180.02562 * 5 2 1 39 39 H 1.09000 * 109.46926 * 59.99489 * 6 5 2 40 40 H 1.09005 * 109.46594 * 299.99386 * 6 5 2 41 41 H 1.09000 * 109.47661 * 59.99919 * 7 6 5 42 42 H 1.09004 * 109.47264 * 299.99863 * 7 6 5 43 43 H 0.96995 * 120.00029 * 355.34784 * 10 8 7 44 44 H 1.09003 * 109.46828 * 54.53346 * 13 11 10 45 45 H 1.08995 * 109.47196 * 174.53361 * 13 11 10 46 46 H 0.97000 * 119.99880 * 180.02562 * 17 16 14 47 47 H 1.07997 * 120.00213 * 359.97438 * 23 22 11 48 48 H 1.07998 * 119.99812 * 180.27578 * 24 23 22 49 49 H 1.08001 * 119.99769 * 179.83788 * 25 24 23 50 50 H 1.08006 * 119.99785 * 180.02562 * 26 25 24 51 51 H 1.07999 * 120.00420 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0400 -0.7212 1.2494 6 6 1.5300 -2.1637 1.2494 7 6 2.0394 -2.8846 2.4990 8 6 1.5367 -4.3053 2.4994 9 8 0.8392 -4.7020 1.5900 10 7 1.8663 -5.1366 3.5078 11 6 1.2960 -6.4849 3.5618 12 1 1.2397 -6.8962 2.5539 13 6 2.1837 -7.3798 4.4290 14 6 3.5254 -7.5516 3.7646 15 1 3.6990 -7.1363 2.7828 16 6 4.5313 -8.2389 4.4101 17 7 5.7021 -8.3892 3.8301 18 14 4.2310 -8.9577 6.1079 19 1 3.7101 -10.3420 5.9743 20 1 5.5061 -8.9799 6.8687 21 1 3.2379 -8.1227 6.8303 22 6 -0.0872 -6.4218 4.1565 23 6 -0.3415 -5.5860 5.2279 24 6 -1.6113 -5.5249 5.7707 25 6 -2.6248 -6.3063 5.2479 26 6 -2.3693 -7.1460 4.1800 27 6 -1.1005 -7.2039 3.6343 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6767 -1.7490 -1.2491 35 1 1.6768 -0.2076 -2.1391 36 1 3.1300 -0.7217 -1.2489 37 1 1.6766 -0.2073 2.1393 38 1 3.1299 -0.7208 1.2496 39 1 1.8934 -2.6775 0.3594 40 1 0.4400 -2.1637 1.2494 41 1 1.6757 -2.3707 3.3887 42 1 3.1294 -2.8846 2.4996 43 1 2.4812 -4.8421 4.1977 44 1 2.3190 -6.9186 5.4073 45 1 1.7103 -8.3542 4.5490 46 1 6.4097 -8.8731 4.2840 47 1 0.4513 -4.9786 5.6389 48 1 -1.8110 -4.8687 6.6048 49 1 -3.6163 -6.2605 5.6737 50 1 -3.1612 -7.7561 3.7713 51 1 -0.9007 -7.8602 2.8002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153257488.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:55 Heat of formation + Delta-G solvation = -69.772682 kcal Electronic energy + Delta-G solvation = -26693.172889 eV Core-core repulsion = 23169.060693 eV Total energy + Delta-G solvation = -3524.112196 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.10338 -39.83443 -38.84719 -36.83750 -34.68631 -34.03718 -32.52438 -31.70307 -30.98496 -28.40300 -28.13211 -28.05378 -26.50723 -23.61345 -23.45245 -23.13307 -21.44643 -21.04159 -19.51358 -19.06956 -17.92580 -17.67255 -17.05825 -16.70411 -16.29526 -16.07163 -15.74245 -15.41967 -15.23675 -14.98161 -14.81290 -14.64427 -14.37847 -14.25270 -14.16581 -13.84646 -13.59528 -13.33029 -13.20624 -13.01228 -12.70063 -12.54197 -12.53157 -12.49199 -12.45515 -12.41223 -11.92458 -11.73580 -11.71536 -11.70931 -11.43504 -11.36538 -11.29012 -11.24128 -10.82710 -10.68524 -9.95670 -9.76510 -9.54209 -8.28765 -6.33973 0.49062 0.54842 1.37300 1.38259 1.49186 1.79475 2.35073 2.40863 2.96037 3.06787 3.78871 3.84364 3.93501 3.95863 4.02483 4.07973 4.20026 4.21882 4.30237 4.32038 4.38974 4.58740 4.65750 4.68935 4.69865 4.72875 4.75341 4.83527 4.86491 4.89727 4.96630 5.00107 5.03674 5.11180 5.12990 5.14574 5.17334 5.25013 5.26173 5.26768 5.37759 5.49198 5.54305 5.58265 5.59366 5.63066 5.63755 5.65167 5.88546 6.17188 6.25149 6.70889 6.76928 7.30050 7.42362 8.87604 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.010059 B = 0.003614 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.985139 B = 7745.855275 C = 9807.451207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.071 4.071 3 C -0.137 4.137 4 C -0.146 4.146 5 C -0.103 4.103 6 C -0.099 4.099 7 C -0.133 4.133 8 C 0.504 3.496 9 O -0.592 6.592 10 N -0.702 5.702 11 C 0.203 3.797 12 H 0.049 0.951 13 C -0.004 4.004 14 C -0.520 4.520 15 H 0.029 0.971 16 C 0.012 3.988 17 N -0.947 5.947 18 Si 0.946 3.054 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.240 1.240 22 C -0.099 4.099 23 C -0.119 4.119 24 C -0.123 4.123 25 C -0.128 4.128 26 C -0.124 4.124 27 C -0.133 4.133 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.044 0.956 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.043 0.957 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.049 0.951 40 H 0.059 0.941 41 H 0.118 0.882 42 H 0.102 0.898 43 H 0.409 0.591 44 H 0.040 0.960 45 H 0.025 0.975 46 H 0.266 0.734 47 H 0.126 0.874 48 H 0.148 0.852 49 H 0.151 0.849 50 H 0.142 0.858 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.255 17.082 1.890 21.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.071 4.071 3 C -0.194 4.194 4 C -0.203 4.203 5 C -0.140 4.140 6 C -0.137 4.137 7 C -0.172 4.172 8 C 0.292 3.708 9 O -0.474 6.474 10 N -0.351 5.351 11 C 0.098 3.902 12 H 0.067 0.933 13 C -0.042 4.042 14 C -0.558 4.558 15 H 0.047 0.953 16 C -0.185 4.185 17 N -0.588 5.588 18 Si 0.769 3.231 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.163 1.163 22 C -0.100 4.100 23 C -0.137 4.137 24 C -0.140 4.140 25 C -0.146 4.146 26 C -0.142 4.142 27 C -0.152 4.152 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.136 0.864 42 H 0.121 0.879 43 H 0.245 0.755 44 H 0.058 0.942 45 H 0.044 0.956 46 H 0.075 0.925 47 H 0.144 0.856 48 H 0.166 0.834 49 H 0.168 0.832 50 H 0.160 0.840 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.570 16.735 1.282 21.584 hybrid contribution 0.907 -0.986 0.305 1.373 sum -12.664 15.749 1.587 20.271 Atomic orbital electron populations 1.21924 0.94755 1.01358 1.01997 1.20554 0.95680 0.95930 0.94934 1.21832 1.01034 0.94421 1.02122 1.21949 1.00967 0.99940 0.97478 1.21633 1.00790 0.93568 0.98024 1.21374 1.00760 0.95577 0.96001 1.21736 1.03232 0.90005 1.02250 1.21464 0.79453 0.89188 0.80670 1.90623 1.41118 1.78638 1.36972 1.45925 1.47563 1.13665 1.27972 1.19500 0.89164 0.83314 0.98218 0.93319 1.19728 0.93348 0.95276 0.95838 1.21184 0.96494 1.34883 1.03239 0.95276 1.25905 0.94470 0.95984 1.02183 1.70067 1.04780 1.43378 1.40543 0.85734 0.78215 0.79483 0.79642 1.19978 1.20976 1.16305 1.20387 0.95152 0.97582 0.96852 1.21108 0.98108 0.98810 0.95718 1.21455 0.92397 0.99736 1.00444 1.21482 1.00342 0.96277 0.96469 1.21375 0.96089 0.99644 0.97059 1.21176 0.93930 0.99760 1.00338 0.92041 0.92404 0.93673 0.92518 0.92377 0.92021 0.93795 0.92288 0.92659 0.90566 0.91460 0.93271 0.92273 0.86375 0.87929 0.75473 0.94157 0.95648 0.92497 0.85571 0.83388 0.83173 0.84049 0.87207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.12 71.98 0.58 -1.94 16 2 C -0.07 -1.24 0.80 -52.18 -0.04 -1.28 16 3 C -0.14 -1.92 8.47 71.98 0.61 -1.31 16 4 C -0.15 -2.84 8.12 71.98 0.58 -2.26 16 5 C -0.10 -1.88 4.27 30.60 0.13 -1.75 16 6 C -0.10 -2.45 3.80 30.59 0.12 -2.34 16 7 C -0.13 -3.33 5.70 29.84 0.17 -3.16 16 8 C 0.50 18.12 7.73 87.66 0.68 18.80 16 9 O -0.59 -26.22 15.68 -3.04 -0.05 -26.27 16 10 N -0.70 -25.59 4.09 -446.10 -1.82 -27.41 16 11 C 0.20 8.41 2.11 44.25 0.09 8.51 16 12 H 0.05 2.36 7.49 -2.38 -0.02 2.35 16 13 C 0.00 -0.19 3.56 29.85 0.11 -0.09 16 14 C -0.52 -28.95 9.40 25.60 0.24 -28.70 16 15 H 0.03 1.84 7.99 -2.91 -0.02 1.82 16 16 C 0.01 0.68 5.47 84.65 0.46 1.14 16 17 N -0.95 -58.16 13.96 21.45 0.30 -57.87 16 18 Si 0.95 42.67 27.57 68.60 1.89 44.56 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 21 H -0.24 -9.79 6.41 99.48 0.64 -9.15 16 22 C -0.10 -3.52 4.86 -19.86 -0.10 -3.61 16 23 C -0.12 -3.56 9.32 22.27 0.21 -3.36 16 24 C -0.12 -2.97 10.05 22.27 0.22 -2.75 16 25 C -0.13 -2.96 10.05 22.27 0.22 -2.73 16 26 C -0.12 -3.31 10.05 22.27 0.22 -3.08 16 27 C -0.13 -4.51 9.67 22.27 0.22 -4.29 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.04 0.95 6.43 -2.39 -0.02 0.93 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.04 1.01 6.43 -2.39 -0.02 1.00 16 35 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.05 1.44 6.39 -2.39 -0.02 1.42 16 40 H 0.06 1.59 6.39 -2.38 -0.02 1.58 16 41 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.41 13.29 8.57 -92.71 -0.79 12.50 16 44 H 0.04 1.71 6.86 -2.39 -0.02 1.69 16 45 H 0.03 1.16 7.81 -2.39 -0.02 1.14 16 46 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 47 H 0.13 3.42 7.73 -2.91 -0.02 3.40 16 48 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 49 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 50 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 51 H 0.11 3.79 8.04 -2.91 -0.02 3.76 16 Total: -1.00 -71.80 405.62 5.07 -66.73 By element: Atomic # 1 Polarization: 34.45 SS G_CDS: 0.02 Total: 34.47 kcal Atomic # 6 Polarization: -38.95 SS G_CDS: 4.73 Total: -34.22 kcal Atomic # 7 Polarization: -83.75 SS G_CDS: -1.53 Total: -85.28 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.05 Total: -26.27 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.89 Total: 44.56 kcal Total: -71.80 5.07 -66.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153257488.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.044 kcal (2) G-P(sol) polarization free energy of solvation -71.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds