Wall clock time and date at job start Tue Mar 31 2020 12:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.47112 * 2 1 4 4 C 1.52997 * 109.47336 * 239.99906 * 2 1 3 5 5 C 1.53000 * 109.47344 * 119.99882 * 2 1 3 6 6 C 1.53001 * 109.47267 * 59.99755 * 5 2 1 7 7 C 1.53000 * 109.47267 * 180.02562 * 6 5 2 8 8 C 1.50697 * 109.47005 * 180.02562 * 7 6 5 9 9 O 1.21290 * 120.00067 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00181 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00556 * 180.02562 * 10 8 7 12 12 H 1.09009 * 109.46624 * 324.99750 * 11 10 8 13 13 C 1.52996 * 109.47466 * 205.00158 * 11 10 8 14 14 C 1.50702 * 109.47159 * 64.99479 * 13 11 10 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 11 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.50700 * 109.47471 * 84.99708 * 11 10 8 23 23 C 1.38233 * 119.99377 * 39.72808 * 22 11 10 24 24 C 1.38237 * 119.99600 * 179.78842 * 23 22 11 25 25 C 1.38241 * 119.99990 * 0.44354 * 24 23 22 26 26 C 1.38237 * 119.99716 * 359.81238 * 25 24 23 27 27 C 1.38228 * 120.00326 * 220.00479 * 22 11 10 28 28 H 1.08993 * 109.47363 * 300.00283 * 1 2 3 29 29 H 1.09001 * 109.46883 * 60.00239 * 1 2 3 30 30 H 1.09003 * 109.46621 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46919 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46550 * 299.99803 * 3 2 1 33 33 H 1.09001 * 109.46806 * 60.00100 * 3 2 1 34 34 H 1.09003 * 109.47262 * 299.99603 * 4 2 1 35 35 H 1.09001 * 109.47254 * 60.00081 * 4 2 1 36 36 H 1.09005 * 109.47442 * 180.02562 * 4 2 1 37 37 H 1.09003 * 109.46827 * 300.00368 * 5 2 1 38 38 H 1.08995 * 109.47370 * 180.02562 * 5 2 1 39 39 H 1.09003 * 109.46697 * 60.00533 * 6 5 2 40 40 H 1.09000 * 109.47045 * 300.00834 * 6 5 2 41 41 H 1.09003 * 109.46827 * 60.00613 * 7 6 5 42 42 H 1.08995 * 109.47370 * 300.00619 * 7 6 5 43 43 H 0.97002 * 120.00072 * 359.97438 * 10 8 7 44 44 H 1.09004 * 109.47066 * 304.99682 * 13 11 10 45 45 H 1.08994 * 109.47405 * 184.99512 * 13 11 10 46 46 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 47 47 H 1.07995 * 120.00514 * 359.97438 * 23 22 11 48 48 H 1.08001 * 120.00058 * 180.28006 * 24 23 22 49 49 H 1.07995 * 120.00194 * 179.83256 * 25 24 23 50 50 H 1.08001 * 119.99824 * 180.02562 * 26 25 24 51 51 H 1.08005 * 119.99906 * 359.97438 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2492 6 6 1.5300 -2.1637 1.2493 7 6 2.0396 -2.8847 2.4989 8 6 1.5377 -4.3057 2.4986 9 8 0.8415 -4.7028 1.5883 10 7 1.8625 -5.1353 3.5099 11 6 1.3752 -6.5168 3.5094 12 1 0.3764 -6.5496 3.0738 13 6 1.3222 -7.0395 4.9463 14 6 0.2995 -6.2562 5.7284 15 1 -0.2573 -5.4650 5.2485 16 6 0.0703 -6.5538 7.0551 17 7 0.7480 -7.5175 7.6394 18 14 -1.2028 -5.5879 8.0224 19 1 -1.8227 -4.5656 7.1417 20 1 -2.2521 -6.5130 8.5210 21 1 -0.5462 -4.9178 9.1735 22 6 2.3066 -7.3779 2.6957 23 6 3.6730 -7.1837 2.7744 24 6 4.5276 -7.9764 2.0313 25 6 4.0154 -8.9572 1.2026 26 6 2.6487 -9.1478 1.1200 27 6 1.7944 -8.3580 1.8664 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6767 1.9564 0.8900 34 1 1.6768 -1.7490 -1.2492 35 1 1.6767 -0.2074 -2.1392 36 1 3.1301 -0.7217 -1.2490 37 1 1.6766 -0.2074 2.1392 38 1 3.1300 -0.7208 1.2495 39 1 1.8934 -2.6776 0.3594 40 1 0.4400 -2.1637 1.2493 41 1 1.6758 -2.3708 3.3886 42 1 3.1295 -2.8847 2.4994 43 1 2.4197 -4.8179 4.2377 44 1 2.3014 -6.9243 5.4112 45 1 1.0450 -8.0936 4.9396 46 1 0.5870 -7.7266 8.5729 47 1 4.0729 -6.4148 3.4186 48 1 5.5953 -7.8278 2.0962 49 1 4.6829 -9.5747 0.6200 50 1 2.2485 -9.9143 0.4729 51 1 0.7266 -8.5070 1.8018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153257598.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:00 Heat of formation + Delta-G solvation = -57.882314 kcal Electronic energy + Delta-G solvation = -26634.493770 eV Core-core repulsion = 23110.897179 eV Total energy + Delta-G solvation = -3523.596591 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.66048 -38.62259 -37.91935 -35.19109 -32.96990 -32.70057 -31.03658 -30.44060 -28.85151 -27.50010 -27.38108 -27.09071 -24.82455 -22.39102 -22.20384 -21.89430 -20.04692 -19.60335 -18.72866 -16.96177 -16.35787 -16.15946 -15.69355 -15.47128 -14.84626 -14.78449 -14.53632 -14.47001 -14.16049 -13.89530 -13.66298 -13.12036 -13.00970 -12.79557 -12.63456 -12.50765 -12.18144 -12.10843 -11.85810 -11.81724 -11.65343 -11.63612 -11.48307 -11.13145 -10.93701 -10.89292 -10.73640 -10.58435 -10.54693 -10.49803 -10.44904 -10.36382 -9.77473 -9.33950 -9.20720 -8.53660 -8.46131 -8.36622 -8.16529 -6.09719 -4.12990 1.79510 1.81419 3.20750 3.25488 3.34152 3.38424 3.80216 4.25545 4.39460 4.62223 4.69563 4.71193 5.13553 5.15071 5.21772 5.27145 5.28195 5.28856 5.38339 5.43028 5.47539 5.49623 5.55677 5.65970 5.66585 5.70414 5.76509 5.80564 5.83135 5.88126 5.92213 5.95475 5.98643 6.11849 6.16549 6.21537 6.23025 6.37383 6.40713 6.45897 6.49767 6.60183 6.85765 6.86543 6.96811 7.13520 7.41835 7.49911 7.64020 7.87354 8.19321 8.26662 8.84801 8.93282 9.52079 11.00885 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.008317 B = 0.003896 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3365.992844 B = 7185.761973 C = 9897.567684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.070 4.070 3 C -0.141 4.141 4 C -0.145 4.145 5 C -0.109 4.109 6 C -0.105 4.105 7 C -0.142 4.142 8 C 0.509 3.491 9 O -0.553 6.553 10 N -0.703 5.703 11 C 0.183 3.817 12 H 0.085 0.915 13 C 0.024 3.976 14 C -0.519 4.519 15 H 0.058 0.942 16 C 0.060 3.940 17 N -0.892 5.892 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.069 4.069 23 C -0.108 4.108 24 C -0.125 4.125 25 C -0.136 4.136 26 C -0.123 4.123 27 C -0.109 4.109 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.400 0.600 44 H 0.024 0.976 45 H 0.033 0.967 46 H 0.261 0.739 47 H 0.116 0.884 48 H 0.114 0.886 49 H 0.113 0.887 50 H 0.116 0.884 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.580 10.373 -13.596 18.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.070 4.070 3 C -0.198 4.198 4 C -0.202 4.202 5 C -0.147 4.147 6 C -0.143 4.143 7 C -0.182 4.182 8 C 0.295 3.705 9 O -0.431 6.431 10 N -0.351 5.351 11 C 0.079 3.921 12 H 0.103 0.897 13 C -0.014 4.014 14 C -0.557 4.557 15 H 0.077 0.923 16 C -0.142 4.142 17 N -0.531 5.531 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.071 4.071 23 C -0.127 4.127 24 C -0.143 4.143 25 C -0.154 4.154 26 C -0.141 4.141 27 C -0.127 4.127 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.108 0.892 42 H 0.105 0.895 43 H 0.234 0.766 44 H 0.042 0.958 45 H 0.051 0.949 46 H 0.071 0.929 47 H 0.134 0.866 48 H 0.132 0.868 49 H 0.131 0.869 50 H 0.134 0.866 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.090 9.995 -14.061 18.295 hybrid contribution -0.353 0.515 1.135 1.296 sum 5.737 10.510 -12.926 17.619 Atomic orbital electron populations 1.21949 0.94643 1.02380 1.01313 1.20531 0.95773 0.95084 0.95579 1.21878 1.00788 0.95645 1.01494 1.21944 1.00758 1.00853 0.96648 1.21671 1.00367 0.95506 0.97141 1.21446 1.01773 0.94012 0.97073 1.21687 1.02123 0.93472 1.00926 1.20615 0.80358 0.87512 0.82045 1.90647 1.38605 1.77652 1.36236 1.46010 1.52861 1.12138 1.24132 1.20219 0.94860 0.78670 0.98352 0.89659 1.19388 0.97972 0.97199 0.86806 1.21180 1.21308 1.17981 0.95247 0.92342 1.24996 0.96177 0.95174 0.97851 1.69973 1.41057 1.29921 1.12138 0.86545 0.81534 0.80046 0.79955 1.19726 1.20980 1.21024 1.20563 0.94678 0.96210 0.95610 1.20903 0.93033 0.99491 0.99228 1.21042 0.99147 0.96545 0.97604 1.20990 0.95264 0.99030 1.00107 1.21040 0.93601 0.99608 0.99842 1.21020 0.99833 0.95786 0.96104 0.92781 0.93088 0.91860 0.92828 0.92921 0.92773 0.91903 0.93088 0.92869 0.91968 0.92081 0.91118 0.90985 0.89152 0.89544 0.76550 0.95779 0.94867 0.92933 0.86591 0.86765 0.86866 0.86634 0.86231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.12 37.16 0.30 -1.08 16 2 C -0.07 -0.64 0.80 -154.51 -0.12 -0.76 16 3 C -0.14 -1.12 8.47 37.16 0.31 -0.81 16 4 C -0.14 -1.33 8.12 37.16 0.30 -1.03 16 5 C -0.11 -1.06 4.27 -26.73 -0.11 -1.18 16 6 C -0.11 -1.28 3.80 -26.73 -0.10 -1.38 16 7 C -0.14 -1.81 5.70 -27.88 -0.16 -1.97 16 8 C 0.51 8.84 7.79 -10.99 -0.09 8.75 16 9 O -0.55 -11.52 15.65 5.55 0.09 -11.44 16 10 N -0.70 -12.58 4.02 -54.93 -0.22 -12.80 16 11 C 0.18 3.76 2.12 -69.08 -0.15 3.61 16 12 H 0.09 1.93 7.44 -51.92 -0.39 1.54 16 13 C 0.02 0.57 4.50 -27.88 -0.13 0.44 16 14 C -0.52 -13.74 8.84 -34.44 -0.30 -14.04 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -25.59 13.29 55.43 0.74 -24.86 16 18 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C -0.07 -1.30 4.91 -104.63 -0.51 -1.82 16 23 C -0.11 -1.83 9.33 -39.58 -0.37 -2.20 16 24 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16 25 C -0.14 -1.96 10.05 -39.58 -0.40 -2.35 16 26 C -0.12 -1.88 10.05 -39.59 -0.40 -2.28 16 27 C -0.11 -1.93 9.67 -39.59 -0.38 -2.31 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.67 6.43 -51.93 -0.33 0.34 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.65 6.43 -51.93 -0.33 0.31 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.93 6.39 -51.93 -0.33 0.60 16 40 H 0.07 0.98 6.39 -51.93 -0.33 0.64 16 41 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.40 6.53 8.60 -40.82 -0.35 6.18 16 44 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 47 H 0.12 1.82 7.71 -52.49 -0.40 1.42 16 48 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 49 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 50 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 51 H 0.12 2.04 8.04 -52.48 -0.42 1.62 16 LS Contribution 409.33 15.07 6.17 6.17 Total: -1.00 -30.67 409.33 -10.25 -40.92 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -9.20 Total: 7.15 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: -2.80 Total: -21.13 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.52 Total: -37.65 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.44 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -30.67 -10.25 -40.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153257598.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.962 kcal (2) G-P(sol) polarization free energy of solvation -30.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds