Wall clock time and date at job start Tue Mar 31 2020 11:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38235 * 120.00282 * 269.72898 * 3 2 1 5 5 C 1.38231 * 120.00276 * 179.76303 * 4 3 2 6 6 C 1.38233 * 119.99729 * 0.48568 * 5 4 3 7 7 C 1.50701 * 120.00070 * 179.76597 * 6 5 4 8 8 C 1.50698 * 109.47322 * 270.02023 * 7 6 5 9 9 O 1.21280 * 120.00207 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00201 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00054 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47082 * 90.00423 * 11 10 8 13 13 H 1.07994 * 120.00177 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99927 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00002 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 119.99949 * 359.97438 * 14 12 11 17 17 H 1.48507 * 109.46926 * 90.00621 * 16 14 12 18 18 H 1.48502 * 109.47234 * 210.00281 * 16 14 12 19 19 H 1.48501 * 109.47569 * 330.00768 * 16 14 12 20 20 C 1.46504 * 119.99660 * 0.02562 * 10 8 7 21 21 C 1.52999 * 109.46721 * 89.99890 * 20 10 8 22 22 C 1.53005 * 109.46643 * 179.97438 * 21 20 10 23 23 C 1.53006 * 109.46960 * 175.00411 * 22 21 20 24 24 C 1.53001 * 109.47333 * 294.99976 * 22 21 20 25 25 C 1.38239 * 120.00062 * 359.79046 * 6 5 4 26 26 C 1.38230 * 119.99880 * 359.95582 * 25 6 5 27 27 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 32 32 H 1.08008 * 119.99550 * 359.97438 * 4 3 2 33 33 H 1.07993 * 120.00327 * 180.25079 * 5 4 3 34 34 H 1.09002 * 109.47060 * 30.02215 * 7 6 5 35 35 H 1.09001 * 109.47380 * 150.02303 * 7 6 5 36 36 H 1.09000 * 109.47082 * 209.99959 * 11 10 8 37 37 H 1.09002 * 109.47248 * 330.00068 * 11 10 8 38 38 H 0.96997 * 120.00067 * 179.97438 * 15 14 12 39 39 H 1.08996 * 109.47153 * 209.99891 * 20 10 8 40 40 H 1.09000 * 109.47213 * 329.99905 * 20 10 8 41 41 H 1.08997 * 109.47750 * 299.99605 * 21 20 10 42 42 H 1.09000 * 109.47265 * 60.00047 * 21 20 10 43 43 H 1.09000 * 109.47603 * 55.00282 * 22 21 20 44 44 H 1.09000 * 109.47524 * 59.99821 * 23 22 21 45 45 H 1.09005 * 109.47037 * 180.02562 * 23 22 21 46 46 H 1.08996 * 109.46671 * 299.99853 * 23 22 21 47 47 H 1.09000 * 109.47490 * 180.02562 * 24 22 21 48 48 H 1.09000 * 109.47024 * 300.00101 * 24 22 21 49 49 H 1.08998 * 109.46897 * 59.99805 * 24 22 21 50 50 H 1.08008 * 119.99983 * 179.97438 * 25 6 5 51 51 H 1.08007 * 119.99843 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0706 -1.1971 5 6 2.7243 3.3754 -1.1971 6 6 2.9543 4.0272 0.0000 7 6 3.4567 5.4480 0.0001 8 6 4.9637 5.4480 0.0001 9 8 5.5701 4.3977 -0.0004 10 7 5.6376 6.6152 -0.0004 11 6 7.1025 6.6152 -0.0009 12 6 7.6043 6.6150 -1.4219 13 1 6.9023 6.6145 -2.2425 14 6 8.9598 6.6145 -1.6743 15 7 9.3978 6.6138 -2.9144 16 14 10.1742 6.6146 -0.2549 17 1 10.4956 5.2145 0.1216 18 1 11.4175 7.3141 -0.6673 19 1 9.5749 7.3152 0.9093 20 6 4.9050 7.8840 -0.0003 21 6 4.6505 8.3258 1.4422 22 6 3.8860 9.6512 1.4422 23 6 3.5227 10.0303 2.8793 24 6 4.7635 10.7461 0.8323 25 6 2.7240 3.3755 1.1972 26 6 2.2628 2.0724 1.1971 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 2.0927 1.5598 -2.1325 33 1 2.9047 3.8844 -2.1324 34 1 3.0933 5.9619 -0.8899 35 1 3.0934 5.9618 0.8901 36 1 7.4661 7.5053 0.5126 37 1 7.4661 5.7253 0.5130 38 1 10.3513 6.6138 -3.0920 39 1 5.4938 8.6435 -0.5145 40 1 3.9524 7.7535 -0.5138 41 1 4.0617 7.5663 1.9564 42 1 5.6031 8.4563 1.9557 43 1 2.9751 9.5452 0.8530 44 1 4.4335 10.1363 3.4686 45 1 2.9776 10.9743 2.8793 46 1 2.8976 9.2502 3.3138 47 1 4.2190 11.6904 0.8327 48 1 5.6743 10.8521 1.4215 49 1 5.0224 10.4760 -0.1915 50 1 2.9041 3.8846 2.1326 51 1 2.0825 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163831750.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:48 Heat of formation + Delta-G solvation = -42.972498 kcal Electronic energy + Delta-G solvation = -26723.379186 eV Core-core repulsion = 23200.429133 eV Total energy + Delta-G solvation = -3522.950053 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.79832 -38.73576 -36.82919 -34.76280 -34.33618 -32.57347 -31.20349 -30.75138 -29.36361 -27.99634 -27.12578 -26.53705 -23.52012 -23.23352 -22.57522 -22.05512 -20.43984 -19.93174 -18.34263 -16.89134 -16.49382 -16.19206 -15.71490 -15.45937 -15.11931 -14.77708 -14.45355 -13.95990 -13.94587 -13.75677 -13.70906 -13.48754 -13.16127 -13.03643 -12.75748 -12.55221 -12.38549 -12.24625 -12.08073 -11.86614 -11.65681 -11.61613 -11.57201 -11.25395 -11.21100 -10.91952 -10.82111 -10.75886 -10.72665 -10.59111 -10.47040 -10.36514 -10.10809 -9.51506 -9.03539 -8.71391 -8.57091 -8.29858 -7.67030 -6.07110 -4.05331 1.49373 1.61228 3.29905 3.35836 3.37976 3.39427 3.72840 4.05806 4.41047 4.73208 4.82938 4.86793 4.90102 4.97199 4.97863 5.09454 5.14962 5.22217 5.26828 5.30380 5.39428 5.45002 5.46852 5.58369 5.60997 5.66533 5.68617 5.71340 5.73281 5.77376 5.78517 5.87038 5.92320 5.97111 6.03260 6.10802 6.12825 6.20579 6.24005 6.25266 6.44814 6.48156 6.57580 6.73948 6.74453 6.81566 6.97725 7.19057 7.38863 7.63659 8.29414 8.49315 8.95421 9.03999 9.53678 11.06380 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009388 B = 0.003850 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2981.811183 B = 7271.603417 C = 9513.427803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.090 4.090 4 C -0.116 4.116 5 C -0.100 4.100 6 C -0.059 4.059 7 C -0.104 4.104 8 C 0.509 3.491 9 O -0.532 6.532 10 N -0.594 5.594 11 C 0.217 3.783 12 C -0.526 4.526 13 H 0.074 0.926 14 C 0.072 3.928 15 N -0.898 5.898 16 Si 0.875 3.125 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.266 1.266 20 C 0.110 3.890 21 C -0.134 4.134 22 C -0.093 4.093 23 C -0.146 4.146 24 C -0.152 4.152 25 C -0.104 4.104 26 C -0.119 4.119 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.028 0.972 37 H 0.035 0.965 38 H 0.264 0.736 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.053 0.947 45 H 0.051 0.949 46 H 0.052 0.948 47 H 0.050 0.950 48 H 0.055 0.945 49 H 0.062 0.938 50 H 0.117 0.883 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.704 -0.876 9.368 20.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 C -0.091 4.091 4 C -0.134 4.134 5 C -0.118 4.118 6 C -0.059 4.059 7 C -0.144 4.144 8 C 0.296 3.704 9 O -0.408 6.408 10 N -0.325 5.325 11 C 0.097 3.903 12 C -0.565 4.565 13 H 0.092 0.908 14 C -0.130 4.130 15 N -0.537 5.537 16 Si 0.702 3.298 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.191 1.191 20 C -0.014 4.014 21 C -0.173 4.173 22 C -0.113 4.113 23 C -0.203 4.203 24 C -0.209 4.209 25 C -0.122 4.122 26 C -0.137 4.137 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.046 0.954 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.069 0.931 48 H 0.074 0.926 49 H 0.081 0.919 50 H 0.135 0.865 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -18.175 -1.437 9.252 20.445 hybrid contribution 0.903 0.161 0.547 1.068 sum -17.272 -1.276 9.799 19.899 Atomic orbital electron populations 1.21742 0.94986 1.01373 1.02135 1.20511 0.95909 0.92998 1.02685 1.19804 0.99962 0.95979 0.93308 1.20925 1.00419 0.94754 0.97342 1.20989 0.98399 0.94860 0.97597 1.19348 0.98027 0.95075 0.93454 1.20776 0.94365 0.94878 1.04383 1.20209 0.88743 0.84082 0.77390 1.90693 1.69989 1.30922 1.49202 1.47919 1.08253 1.04466 1.71899 1.19618 0.75304 0.97161 0.98234 1.21331 0.92711 1.51128 0.91307 0.90807 1.24851 0.98138 0.94507 0.95502 1.69897 1.14489 1.50681 1.18604 0.86871 0.81058 0.78866 0.83022 1.19941 1.21096 1.19078 1.21569 0.96866 0.87139 0.95843 1.22137 1.00806 0.96299 0.98081 1.21061 0.98660 0.94980 0.96553 1.21835 1.01236 1.00878 0.96383 1.21920 0.99658 0.97769 1.01570 1.20911 0.99096 0.94889 0.97315 1.20884 1.00744 0.94789 0.97259 0.92600 0.92656 0.92668 0.91258 0.91179 0.86391 0.86189 0.88522 0.88723 0.95378 0.94739 0.92611 0.89571 0.91424 0.92145 0.91422 0.91209 0.92766 0.92941 0.92913 0.93101 0.92620 0.91868 0.86498 0.86525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.89 37.16 0.37 -0.83 16 2 C -0.08 -0.82 6.06 -27.89 -0.17 -0.99 16 3 C -0.09 -1.15 5.13 -104.63 -0.54 -1.69 16 4 C -0.12 -1.58 9.70 -39.58 -0.38 -1.97 16 5 C -0.10 -1.52 9.70 -39.59 -0.38 -1.90 16 6 C -0.06 -0.90 4.37 -104.62 -0.46 -1.36 16 7 C -0.10 -1.54 4.38 -29.04 -0.13 -1.67 16 8 C 0.51 10.40 7.67 -10.99 -0.08 10.31 16 9 O -0.53 -13.39 15.61 5.56 0.09 -13.30 16 10 N -0.59 -12.08 2.46 -175.06 -0.43 -12.51 16 11 C 0.22 5.34 4.23 -5.20 -0.02 5.32 16 12 C -0.53 -15.19 9.94 -34.44 -0.34 -15.54 16 13 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 14 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 15 N -0.90 -27.89 13.96 55.43 0.77 -27.11 16 16 Si 0.87 21.83 27.47 -169.99 -4.67 17.16 16 17 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 20 C 0.11 1.68 4.97 -4.04 -0.02 1.66 16 21 C -0.13 -1.70 5.01 -26.73 -0.13 -1.83 16 22 C -0.09 -0.96 2.92 -90.61 -0.26 -1.22 16 23 C -0.15 -1.33 9.19 37.16 0.34 -0.99 16 24 C -0.15 -1.61 8.95 37.16 0.33 -1.28 16 25 C -0.10 -1.48 9.70 -39.58 -0.38 -1.87 16 26 C -0.12 -1.54 9.70 -39.59 -0.38 -1.93 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 31 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 32 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 33 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.10 1.27 7.34 -51.93 -0.38 0.89 16 35 H 0.09 1.15 7.13 -51.93 -0.37 0.78 16 36 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 37 H 0.03 0.92 6.85 -51.93 -0.36 0.56 16 38 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 39 H 0.09 1.41 6.49 -51.93 -0.34 1.07 16 40 H 0.07 0.88 6.44 -51.93 -0.33 0.54 16 41 H 0.06 0.72 7.22 -51.93 -0.38 0.35 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 49 H 0.06 0.72 6.56 -51.93 -0.34 0.38 16 50 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 51 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 LS Contribution 408.61 15.07 6.16 6.16 Total: -1.00 -34.42 408.61 -10.04 -44.47 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -9.21 Total: 0.89 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -2.75 Total: -15.75 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.34 Total: -39.63 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.09 Total: -13.30 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.42 -10.04 -44.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163831750.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.493 kcal (2) G-P(sol) polarization free energy of solvation -34.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds