Wall clock time and date at job start Tue Mar 31 2020 11:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38235 * 120.00282 * 269.72898 * 3 2 1 5 5 C 1.38231 * 120.00276 * 179.76303 * 4 3 2 6 6 C 1.38233 * 119.99729 * 0.48568 * 5 4 3 7 7 C 1.50701 * 120.00070 * 179.76597 * 6 5 4 8 8 C 1.50698 * 109.47322 * 270.02023 * 7 6 5 9 9 O 1.21280 * 120.00207 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00201 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00054 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47082 * 90.00423 * 11 10 8 13 13 H 1.07994 * 120.00177 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99927 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00002 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 119.99949 * 359.97438 * 14 12 11 17 17 H 1.48507 * 109.46926 * 90.00621 * 16 14 12 18 18 H 1.48502 * 109.47234 * 210.00281 * 16 14 12 19 19 H 1.48501 * 109.47569 * 330.00768 * 16 14 12 20 20 C 1.46504 * 119.99660 * 0.02562 * 10 8 7 21 21 C 1.52999 * 109.46721 * 89.99890 * 20 10 8 22 22 C 1.53005 * 109.46643 * 179.97438 * 21 20 10 23 23 C 1.53006 * 109.46960 * 175.00411 * 22 21 20 24 24 C 1.53001 * 109.47333 * 294.99976 * 22 21 20 25 25 C 1.38239 * 120.00062 * 359.79046 * 6 5 4 26 26 C 1.38230 * 119.99880 * 359.95582 * 25 6 5 27 27 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 32 32 H 1.08008 * 119.99550 * 359.97438 * 4 3 2 33 33 H 1.07993 * 120.00327 * 180.25079 * 5 4 3 34 34 H 1.09002 * 109.47060 * 30.02215 * 7 6 5 35 35 H 1.09001 * 109.47380 * 150.02303 * 7 6 5 36 36 H 1.09000 * 109.47082 * 209.99959 * 11 10 8 37 37 H 1.09002 * 109.47248 * 330.00068 * 11 10 8 38 38 H 0.96997 * 120.00067 * 179.97438 * 15 14 12 39 39 H 1.08996 * 109.47153 * 209.99891 * 20 10 8 40 40 H 1.09000 * 109.47213 * 329.99905 * 20 10 8 41 41 H 1.08997 * 109.47750 * 299.99605 * 21 20 10 42 42 H 1.09000 * 109.47265 * 60.00047 * 21 20 10 43 43 H 1.09000 * 109.47603 * 55.00282 * 22 21 20 44 44 H 1.09000 * 109.47524 * 59.99821 * 23 22 21 45 45 H 1.09005 * 109.47037 * 180.02562 * 23 22 21 46 46 H 1.08996 * 109.46671 * 299.99853 * 23 22 21 47 47 H 1.09000 * 109.47490 * 180.02562 * 24 22 21 48 48 H 1.09000 * 109.47024 * 300.00101 * 24 22 21 49 49 H 1.08998 * 109.46897 * 59.99805 * 24 22 21 50 50 H 1.08008 * 119.99983 * 179.97438 * 25 6 5 51 51 H 1.08007 * 119.99843 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0706 -1.1971 5 6 2.7243 3.3754 -1.1971 6 6 2.9543 4.0272 0.0000 7 6 3.4567 5.4480 0.0001 8 6 4.9637 5.4480 0.0001 9 8 5.5701 4.3977 -0.0004 10 7 5.6376 6.6152 -0.0004 11 6 7.1025 6.6152 -0.0009 12 6 7.6043 6.6150 -1.4219 13 1 6.9023 6.6145 -2.2425 14 6 8.9598 6.6145 -1.6743 15 7 9.3978 6.6138 -2.9144 16 14 10.1742 6.6146 -0.2549 17 1 10.4956 5.2145 0.1216 18 1 11.4175 7.3141 -0.6673 19 1 9.5749 7.3152 0.9093 20 6 4.9050 7.8840 -0.0003 21 6 4.6505 8.3258 1.4422 22 6 3.8860 9.6512 1.4422 23 6 3.5227 10.0303 2.8793 24 6 4.7635 10.7461 0.8323 25 6 2.7240 3.3755 1.1972 26 6 2.2628 2.0724 1.1971 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 2.0927 1.5598 -2.1325 33 1 2.9047 3.8844 -2.1324 34 1 3.0933 5.9619 -0.8899 35 1 3.0934 5.9618 0.8901 36 1 7.4661 7.5053 0.5126 37 1 7.4661 5.7253 0.5130 38 1 10.3513 6.6138 -3.0920 39 1 5.4938 8.6435 -0.5145 40 1 3.9524 7.7535 -0.5138 41 1 4.0617 7.5663 1.9564 42 1 5.6031 8.4563 1.9557 43 1 2.9751 9.5452 0.8530 44 1 4.4335 10.1363 3.4686 45 1 2.9776 10.9743 2.8793 46 1 2.8976 9.2502 3.3138 47 1 4.2190 11.6904 0.8327 48 1 5.6743 10.8521 1.4215 49 1 5.0224 10.4760 -0.1915 50 1 2.9041 3.8846 2.1326 51 1 2.0825 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163831750.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:47 Heat of formation + Delta-G solvation = -61.022164 kcal Electronic energy + Delta-G solvation = -26724.161879 eV Core-core repulsion = 23200.429133 eV Total energy + Delta-G solvation = -3523.732745 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.14303 -39.97868 -37.97583 -36.14353 -35.46696 -34.65687 -32.37491 -31.79165 -30.85670 -29.35064 -27.92650 -27.88460 -24.79621 -24.50938 -23.62212 -23.52929 -21.49216 -20.81357 -19.88307 -19.09776 -17.97882 -17.48154 -16.84495 -16.75587 -16.30126 -16.03106 -15.77651 -15.53770 -15.00046 -14.72603 -14.69676 -14.58460 -14.49916 -14.24891 -14.16095 -13.77201 -13.66768 -13.53341 -13.22595 -12.99049 -12.94007 -12.81449 -12.67646 -12.50477 -12.49329 -12.16719 -12.10362 -11.99683 -11.81519 -11.67403 -11.64004 -11.59907 -11.47193 -11.35996 -10.84704 -10.68225 -9.77449 -9.39219 -9.36290 -8.35569 -6.39932 0.42516 0.54960 1.29408 1.33622 1.41798 1.82320 2.28473 2.30963 2.89576 2.98942 3.70846 3.83032 3.89271 3.94850 3.98609 4.06473 4.16097 4.18371 4.21904 4.34248 4.46909 4.50960 4.56545 4.58281 4.61138 4.71499 4.75866 4.76535 4.81734 4.87656 4.90114 4.92131 5.00187 5.06971 5.10146 5.11585 5.17279 5.19419 5.23932 5.24873 5.39645 5.40697 5.45963 5.53259 5.54289 5.59398 5.66712 5.72335 5.74720 6.16177 6.23522 6.61078 6.72695 7.20826 7.45107 8.81471 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009388 B = 0.003850 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2981.811183 B = 7271.603417 C = 9513.427803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.083 4.083 3 C -0.092 4.092 4 C -0.129 4.129 5 C -0.123 4.123 6 C -0.082 4.082 7 C -0.089 4.089 8 C 0.501 3.499 9 O -0.589 6.589 10 N -0.600 5.600 11 C 0.228 3.772 12 C -0.533 4.533 13 H 0.029 0.971 14 C 0.012 3.988 15 N -0.945 5.945 16 Si 0.944 3.056 17 H -0.277 1.277 18 H -0.273 1.273 19 H -0.239 1.239 20 C 0.105 3.895 21 C -0.125 4.125 22 C -0.088 4.088 23 C -0.144 4.144 24 C -0.154 4.154 25 C -0.114 4.114 26 C -0.125 4.125 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.132 0.868 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.129 0.871 36 H 0.045 0.955 37 H 0.014 0.986 38 H 0.268 0.732 39 H 0.071 0.929 40 H 0.095 0.905 41 H 0.073 0.927 42 H 0.051 0.949 43 H 0.086 0.914 44 H 0.047 0.953 45 H 0.064 0.936 46 H 0.060 0.940 47 H 0.066 0.934 48 H 0.046 0.954 49 H 0.049 0.951 50 H 0.131 0.869 51 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.546 -0.569 11.848 23.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 C -0.092 4.092 4 C -0.147 4.147 5 C -0.141 4.141 6 C -0.082 4.082 7 C -0.128 4.128 8 C 0.290 3.710 9 O -0.470 6.470 10 N -0.330 5.330 11 C 0.106 3.894 12 C -0.572 4.572 13 H 0.047 0.953 14 C -0.186 4.186 15 N -0.585 5.585 16 Si 0.767 3.233 17 H -0.203 1.203 18 H -0.198 1.198 19 H -0.163 1.163 20 C -0.017 4.017 21 C -0.164 4.164 22 C -0.107 4.107 23 C -0.201 4.201 24 C -0.211 4.211 25 C -0.132 4.132 26 C -0.143 4.143 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.150 0.850 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.147 0.853 36 H 0.063 0.937 37 H 0.033 0.967 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.113 0.887 41 H 0.091 0.909 42 H 0.070 0.930 43 H 0.104 0.896 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.079 0.921 47 H 0.085 0.915 48 H 0.065 0.935 49 H 0.068 0.932 50 H 0.149 0.851 51 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -20.067 -1.080 11.740 23.274 hybrid contribution 1.416 0.023 -0.329 1.454 sum -18.651 -1.058 11.411 21.890 Atomic orbital electron populations 1.21711 0.93624 1.02455 1.02025 1.20579 0.97004 0.91130 1.03356 1.20194 0.98851 0.97301 0.92882 1.21187 1.00409 0.94457 0.98620 1.21165 0.99440 0.95853 0.97648 1.19496 0.99172 0.95543 0.94020 1.20740 0.89632 0.95676 1.06764 1.21209 0.91050 0.83007 0.75701 1.90653 1.71652 1.32895 1.51757 1.48023 1.06884 1.06586 1.71522 1.19236 0.78381 0.96682 0.95134 1.21556 0.92373 1.50842 0.92407 0.95306 1.25822 1.00354 0.93948 0.98492 1.70045 1.15230 1.52057 1.21153 0.85764 0.78532 0.78933 0.80041 1.20317 1.19821 1.16252 1.21863 0.97125 0.84513 0.98234 1.22049 1.00691 0.98027 0.95590 1.21044 0.98672 0.93170 0.97800 1.21810 1.01263 1.01837 0.95175 1.21938 0.99722 0.98860 1.00597 1.21186 0.98965 0.95591 0.97479 1.21237 1.00062 0.94562 0.98436 0.92968 0.92529 0.91002 0.90291 0.90847 0.85002 0.86700 0.86789 0.85299 0.93707 0.96746 0.92291 0.91039 0.88690 0.90865 0.93012 0.89578 0.93391 0.91681 0.92070 0.91502 0.93507 0.93219 0.85093 0.84136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.89 71.98 0.71 -1.30 16 2 C -0.08 -1.48 6.06 29.85 0.18 -1.30 16 3 C -0.09 -2.23 5.13 -19.87 -0.10 -2.33 16 4 C -0.13 -3.47 9.70 22.27 0.22 -3.25 16 5 C -0.12 -3.76 9.70 22.27 0.22 -3.54 16 6 C -0.08 -2.47 4.37 -19.86 -0.09 -2.56 16 7 C -0.09 -2.53 4.38 29.10 0.13 -2.40 16 8 C 0.50 20.61 7.67 87.66 0.67 21.28 16 9 O -0.59 -30.60 15.61 -3.03 -0.05 -30.65 16 10 N -0.60 -24.52 2.46 -826.16 -2.03 -26.55 16 11 C 0.23 11.38 4.23 85.63 0.36 11.74 16 12 C -0.53 -31.99 9.94 25.60 0.25 -31.74 16 13 H 0.03 1.93 8.06 -2.91 -0.02 1.90 16 14 C 0.01 0.71 5.47 84.65 0.46 1.17 16 15 N -0.94 -60.63 13.96 21.45 0.30 -60.33 16 16 Si 0.94 45.48 27.47 68.60 1.88 47.37 16 17 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 18 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.24 -10.39 6.54 99.48 0.65 -9.74 16 20 C 0.10 3.11 4.97 86.38 0.43 3.54 16 21 C -0.12 -2.89 5.01 30.60 0.15 -2.74 16 22 C -0.09 -1.56 2.92 -10.79 -0.03 -1.59 16 23 C -0.14 -2.17 9.19 71.98 0.66 -1.50 16 24 C -0.15 -3.02 8.95 71.98 0.64 -2.37 16 25 C -0.11 -3.10 9.70 22.27 0.22 -2.89 16 26 C -0.13 -3.05 9.70 22.27 0.22 -2.83 16 27 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.08 1.25 8.09 -2.39 -0.02 1.24 16 31 H 0.07 1.25 8.08 -2.39 -0.02 1.23 16 32 H 0.13 3.02 8.06 -2.91 -0.02 2.99 16 33 H 0.11 3.46 8.06 -2.91 -0.02 3.43 16 34 H 0.11 2.82 7.34 -2.39 -0.02 2.80 16 35 H 0.13 2.73 7.13 -2.39 -0.02 2.71 16 36 H 0.05 2.08 7.13 -2.39 -0.02 2.06 16 37 H 0.01 0.78 6.85 -2.39 -0.02 0.76 16 38 H 0.27 15.99 8.31 -92.71 -0.77 15.21 16 39 H 0.07 2.34 6.49 -2.39 -0.02 2.33 16 40 H 0.09 2.28 6.44 -2.39 -0.02 2.27 16 41 H 0.07 1.52 7.22 -2.39 -0.02 1.50 16 42 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 46 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 48 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.05 1.10 6.56 -2.39 -0.02 1.08 16 50 H 0.13 3.06 8.06 -2.91 -0.02 3.03 16 51 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -78.82 408.61 6.22 -72.60 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 0.81 Total: 22.20 kcal Atomic # 6 Polarization: -29.93 SS G_CDS: 5.30 Total: -24.63 kcal Atomic # 7 Polarization: -85.16 SS G_CDS: -1.73 Total: -86.89 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -0.05 Total: -30.65 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.88 Total: 47.37 kcal Total: -78.82 6.22 -72.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163831750.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.575 kcal (2) G-P(sol) polarization free energy of solvation -78.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds