Wall clock time and date at job start Tue Mar 31 2020 11:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38295 * 119.97135 * 2 1 4 4 C 1.38247 * 120.10853 * 180.02562 * 3 2 1 5 5 C 1.38163 * 120.05830 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.02738 * 179.97438 * 5 4 3 7 7 C 1.38713 * 119.94311 * 359.97438 * 5 4 3 8 8 O 1.35901 * 120.05575 * 180.02562 * 7 5 4 9 9 C 1.42900 * 117.00214 * 185.68234 * 8 7 5 10 10 C 1.53113 * 109.52244 * 155.28858 * 9 8 7 11 11 C 1.53045 * 109.27703 * 177.62051 * 10 9 8 12 12 N 1.46842 * 109.52500 * 300.82118 * 11 10 9 13 13 C 1.46895 * 111.00089 * 185.83825 * 12 11 10 14 14 C 1.53007 * 109.47139 * 170.00354 * 13 12 11 15 15 C 1.53006 * 109.46820 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.46686 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00135 * 359.97438 * 16 15 14 18 18 C 1.37866 * 119.99934 * 180.02562 * 16 15 14 19 19 N 1.31522 * 120.00283 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00349 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47399 * 89.99785 * 20 18 16 22 22 H 1.48500 * 109.47527 * 210.00167 * 20 18 16 23 23 H 1.48502 * 109.47167 * 329.99923 * 20 18 16 24 24 C 1.46851 * 111.19315 * 61.74116 * 12 11 10 25 25 C 1.53039 * 109.52396 * 298.25556 * 24 12 11 26 26 C 1.38124 * 119.97209 * 180.24695 * 2 1 3 27 27 H 1.08998 * 109.46672 * 90.00462 * 1 2 3 28 28 H 1.09004 * 109.47166 * 210.00260 * 1 2 3 29 29 H 1.08993 * 109.47398 * 330.00363 * 1 2 3 30 30 H 1.08001 * 119.94498 * 359.97438 * 3 2 1 31 31 H 1.08000 * 119.96500 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.46985 * 270.01585 * 6 5 4 33 33 H 1.08998 * 109.47009 * 30.02300 * 6 5 4 34 34 H 1.09000 * 109.46956 * 150.01776 * 6 5 4 35 35 H 1.09002 * 109.51910 * 35.16648 * 9 8 7 36 36 H 1.09006 * 109.50189 * 57.68369 * 10 9 8 37 37 H 1.08998 * 109.51002 * 297.56702 * 10 9 8 38 38 H 1.09004 * 109.45763 * 180.80885 * 11 10 9 39 39 H 1.08996 * 109.44953 * 60.83731 * 11 10 9 40 40 H 1.09001 * 109.47042 * 50.00110 * 13 12 11 41 41 H 1.08999 * 109.47279 * 290.00031 * 13 12 11 42 42 H 1.09003 * 109.46654 * 60.00181 * 14 13 12 43 43 H 1.08999 * 109.46771 * 299.99987 * 14 13 12 44 44 H 1.09002 * 109.46862 * 60.00352 * 15 14 13 45 45 H 1.09000 * 109.47019 * 299.99847 * 15 14 13 46 46 H 0.96995 * 120.00097 * 180.02562 * 19 18 16 47 47 H 1.08997 * 109.46130 * 58.27675 * 24 12 11 48 48 H 1.09009 * 109.45958 * 178.23937 * 24 12 11 49 49 H 1.08992 * 109.50283 * 299.23693 * 25 24 12 50 50 H 1.09006 * 109.49884 * 179.12097 * 25 24 12 51 51 H 1.08003 * 120.02983 * 0.02872 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5803 1.2013 -0.0005 5 6 4.2752 0.0072 -0.0005 6 6 5.7822 0.0116 -0.0017 7 6 3.5846 -1.1958 0.0005 8 8 4.2658 -2.3718 0.0011 9 6 3.4946 -3.5683 -0.1239 10 6 4.3680 -4.6810 -0.7100 11 6 3.5542 -5.9749 -0.7861 12 7 3.0949 -6.3456 0.5585 13 6 2.4283 -7.6545 0.5449 14 6 2.1878 -8.1194 1.9826 15 6 1.4930 -9.4825 1.9684 16 6 1.2556 -9.9401 3.3845 17 1 1.5693 -9.3208 4.2118 18 6 0.6388 -11.1496 3.6239 19 7 0.2571 -11.9040 2.6163 20 14 0.3451 -11.7172 5.3791 21 1 -0.9802 -11.2321 5.8411 22 1 0.3748 -13.2010 5.4311 23 1 1.4074 -11.1697 6.2606 24 6 2.2160 -5.3132 1.1226 25 6 2.9899 -3.9996 1.2558 26 6 2.1970 -1.1965 -0.0052 27 1 -0.3632 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8899 0.5137 30 1 1.6565 2.1325 -0.0004 31 1 4.1175 2.1382 -0.0010 32 1 6.1447 0.0125 -1.0297 33 1 6.1433 0.9026 0.5118 34 1 6.1485 -0.8773 0.5120 35 1 2.6451 -3.3870 -0.7824 36 1 5.2379 -4.8353 -0.0715 37 1 4.6957 -4.3978 -1.7103 38 1 4.1777 -6.7728 -1.1897 39 1 2.6921 -5.8238 -1.4357 40 1 3.0597 -8.3785 0.0297 41 1 1.4736 -7.5707 0.0257 42 1 1.5564 -7.3954 2.4977 43 1 3.1426 -8.2032 2.5018 44 1 2.1241 -10.2066 1.4531 45 1 0.5382 -9.3982 1.4493 46 1 -0.1771 -12.7548 2.7848 47 1 1.3601 -5.1655 0.4641 48 1 1.8673 -5.6306 2.1055 49 1 3.8380 -4.1432 1.9251 50 1 2.3327 -3.2296 1.6600 51 1 1.6571 -2.1319 -0.0097 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171034337.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:17 Heat of formation + Delta-G solvation = -39.512651 kcal Electronic energy + Delta-G solvation = -26325.357006 eV Core-core repulsion = 22802.556984 eV Total energy + Delta-G solvation = -3522.800023 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.77652 -39.02464 -37.49027 -34.54407 -33.88148 -32.60842 -31.06490 -30.71259 -29.97838 -29.44117 -26.63012 -25.12006 -24.35157 -23.34987 -22.68235 -21.68524 -21.21513 -19.88175 -19.81723 -17.81926 -16.60676 -16.29328 -15.91424 -15.63344 -15.28269 -14.98381 -14.61105 -14.45909 -14.27089 -14.20469 -13.84576 -13.54619 -13.47171 -13.22425 -13.02282 -12.83651 -12.66808 -12.32859 -12.27400 -12.10718 -11.81341 -11.63042 -11.52364 -11.40111 -11.27293 -11.23222 -10.88670 -10.83228 -10.68722 -10.60753 -10.49961 -10.26782 -9.59299 -9.32876 -9.05217 -8.91444 -8.33659 -8.22745 -8.12514 -5.98978 -4.00969 1.06987 1.23592 2.98985 3.32610 3.38811 3.42700 3.48765 4.03317 4.44480 4.47613 4.54294 4.58466 4.63016 4.75186 4.86850 4.90507 4.98746 5.08605 5.23305 5.26042 5.31100 5.32609 5.36856 5.41339 5.44624 5.47313 5.50274 5.52044 5.58845 5.61793 5.74062 5.76918 5.80069 5.92950 6.01441 6.02382 6.05008 6.11458 6.18475 6.28136 6.30024 6.37048 6.62139 6.69474 6.75681 7.11166 7.28722 7.32053 7.35388 7.69129 7.83814 8.01451 8.44784 9.06243 9.63040 11.12462 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.019697 B = 0.002212 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.172628 B =12657.616212 C =13261.693706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.053 4.053 3 C -0.160 4.160 4 C -0.081 4.081 5 C -0.128 4.128 6 C -0.103 4.103 7 C 0.139 3.861 8 O -0.305 6.305 9 C 0.086 3.914 10 C -0.109 4.109 11 C 0.058 3.942 12 N -0.539 5.539 13 C 0.057 3.943 14 C -0.105 4.105 15 C 0.022 3.978 16 C -0.518 4.518 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.056 3.944 25 C -0.140 4.140 26 C -0.208 4.208 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.121 0.879 31 H 0.126 0.874 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.031 0.969 40 H 0.071 0.929 41 H 0.029 0.971 42 H 0.046 0.954 43 H 0.056 0.944 44 H 0.016 0.984 45 H 0.013 0.987 46 H 0.260 0.740 47 H 0.030 0.970 48 H 0.090 0.910 49 H 0.083 0.917 50 H 0.070 0.930 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.203 26.544 -9.369 28.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.053 4.053 3 C -0.178 4.178 4 C -0.099 4.099 5 C -0.128 4.128 6 C -0.160 4.160 7 C 0.094 3.906 8 O -0.219 6.219 9 C 0.030 3.970 10 C -0.147 4.147 11 C -0.070 4.070 12 N -0.264 5.264 13 C -0.070 4.070 14 C -0.143 4.143 15 C -0.016 4.016 16 C -0.556 4.556 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.072 4.072 25 C -0.178 4.178 26 C -0.226 4.226 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.139 0.861 31 H 0.144 0.856 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.049 0.951 40 H 0.090 0.910 41 H 0.047 0.953 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.034 0.966 45 H 0.031 0.969 46 H 0.069 0.931 47 H 0.048 0.952 48 H 0.108 0.892 49 H 0.102 0.898 50 H 0.088 0.912 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.744 26.281 -9.097 28.616 hybrid contribution -1.268 -0.416 0.396 1.392 sum 5.475 25.865 -8.701 27.833 Atomic orbital electron populations 1.20824 0.91082 1.02994 1.02442 1.19706 0.95985 0.92519 0.97054 1.20893 0.94091 0.97409 1.05397 1.20840 0.93974 0.96739 0.98379 1.19265 0.96528 0.90383 1.06671 1.20583 0.90595 1.02720 1.02110 1.18819 0.90255 0.85890 0.95679 1.86105 1.36203 1.12188 1.87375 1.22572 0.94246 0.82733 0.97412 1.21631 0.99245 0.92405 1.01376 1.22030 0.98177 0.96490 0.90315 1.62020 1.40424 1.02993 1.20940 1.22291 0.96256 0.88428 1.00046 1.21667 1.00560 0.99335 0.92731 1.19076 0.95201 0.90276 0.97044 1.21247 1.38133 1.03661 0.92562 0.92690 1.25030 0.95793 0.96763 0.96972 1.69967 1.40992 1.12291 1.30379 0.86600 0.78569 0.77769 0.85104 1.20716 1.21239 1.19850 1.22075 0.93286 0.90588 1.01260 1.22171 1.01513 0.97134 0.96948 1.21206 0.93060 0.98994 1.09361 0.91032 0.91375 0.91356 0.86127 0.85602 0.91613 0.91911 0.91060 0.91380 0.89781 0.90908 0.89842 0.95065 0.91035 0.95295 0.93492 0.92517 0.96585 0.96871 0.93052 0.95168 0.89166 0.89788 0.91179 0.85257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 10.01 36.01 0.36 -0.50 16 2 C -0.05 -0.50 5.88 -104.64 -0.62 -1.12 16 3 C -0.16 -1.42 9.70 -39.56 -0.38 -1.80 16 4 C -0.08 -0.73 9.70 -39.61 -0.38 -1.11 16 5 C -0.13 -1.32 5.89 -104.48 -0.62 -1.94 16 6 C -0.10 -0.89 9.79 36.00 0.35 -0.54 16 7 C 0.14 1.60 6.57 -39.21 -0.26 1.34 16 8 O -0.31 -3.63 8.85 -19.43 -0.17 -3.80 16 9 C 0.09 0.96 2.17 -26.62 -0.06 0.90 16 10 C -0.11 -1.17 5.75 -26.65 -0.15 -1.32 16 11 C 0.06 0.70 5.46 -3.83 -0.02 0.68 16 12 N -0.54 -7.85 4.66 -234.66 -1.09 -8.95 16 13 C 0.06 0.97 4.96 -3.82 -0.02 0.95 16 14 C -0.11 -2.17 5.08 -26.72 -0.14 -2.30 16 15 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 16 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 17 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 20 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 24 C 0.06 0.75 5.29 -3.83 -0.02 0.73 16 25 C -0.14 -1.65 5.38 -26.65 -0.14 -1.79 16 26 C -0.21 -2.22 7.93 -39.43 -0.31 -2.54 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 29 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 30 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 31 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.43 8.09 -51.93 -0.42 0.02 16 34 H 0.07 0.67 7.53 -51.93 -0.39 0.28 16 35 H 0.07 0.73 6.32 -51.93 -0.33 0.40 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.95 8.02 -51.93 -0.42 0.54 16 39 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 1.21 7.99 -51.93 -0.41 0.80 16 41 H 0.03 0.50 8.12 -51.93 -0.42 0.07 16 42 H 0.05 0.95 6.43 -51.93 -0.33 0.62 16 43 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 47 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.09 1.32 6.21 -51.92 -0.32 1.00 16 49 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 50 H 0.07 0.78 6.90 -51.93 -0.36 0.42 16 51 H 0.13 1.32 5.40 -52.48 -0.28 1.04 16 LS Contribution 397.52 15.07 5.99 5.99 Total: -1.00 -30.80 397.52 -11.66 -42.46 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -9.14 Total: -2.59 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: -2.96 Total: -23.54 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: -0.36 Total: -35.32 kcal Atomic # 8 Polarization: -3.63 SS G_CDS: -0.17 Total: -3.80 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.80 -11.66 -42.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171034337.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.943 kcal (2) G-P(sol) polarization free energy of solvation -30.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds