Wall clock time and date at job start Tue Mar 31 2020 11:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38295 * 119.97135 * 2 1 4 4 C 1.38247 * 120.10853 * 180.02562 * 3 2 1 5 5 C 1.38163 * 120.05830 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.02738 * 179.97438 * 5 4 3 7 7 C 1.38713 * 119.94311 * 359.97438 * 5 4 3 8 8 O 1.35901 * 120.05575 * 180.02562 * 7 5 4 9 9 C 1.42900 * 117.00214 * 185.68234 * 8 7 5 10 10 C 1.53113 * 109.52244 * 155.28858 * 9 8 7 11 11 C 1.53045 * 109.27703 * 177.62051 * 10 9 8 12 12 N 1.46842 * 109.52500 * 300.82118 * 11 10 9 13 13 C 1.46895 * 111.00089 * 185.83825 * 12 11 10 14 14 C 1.53007 * 109.47139 * 170.00354 * 13 12 11 15 15 C 1.53006 * 109.46820 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.46686 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00135 * 359.97438 * 16 15 14 18 18 C 1.37866 * 119.99934 * 180.02562 * 16 15 14 19 19 N 1.31522 * 120.00283 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00349 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47399 * 89.99785 * 20 18 16 22 22 H 1.48500 * 109.47527 * 210.00167 * 20 18 16 23 23 H 1.48502 * 109.47167 * 329.99923 * 20 18 16 24 24 C 1.46851 * 111.19315 * 61.74116 * 12 11 10 25 25 C 1.53039 * 109.52396 * 298.25556 * 24 12 11 26 26 C 1.38124 * 119.97209 * 180.24695 * 2 1 3 27 27 H 1.08998 * 109.46672 * 90.00462 * 1 2 3 28 28 H 1.09004 * 109.47166 * 210.00260 * 1 2 3 29 29 H 1.08993 * 109.47398 * 330.00363 * 1 2 3 30 30 H 1.08001 * 119.94498 * 359.97438 * 3 2 1 31 31 H 1.08000 * 119.96500 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.46985 * 270.01585 * 6 5 4 33 33 H 1.08998 * 109.47009 * 30.02300 * 6 5 4 34 34 H 1.09000 * 109.46956 * 150.01776 * 6 5 4 35 35 H 1.09002 * 109.51910 * 35.16648 * 9 8 7 36 36 H 1.09006 * 109.50189 * 57.68369 * 10 9 8 37 37 H 1.08998 * 109.51002 * 297.56702 * 10 9 8 38 38 H 1.09004 * 109.45763 * 180.80885 * 11 10 9 39 39 H 1.08996 * 109.44953 * 60.83731 * 11 10 9 40 40 H 1.09001 * 109.47042 * 50.00110 * 13 12 11 41 41 H 1.08999 * 109.47279 * 290.00031 * 13 12 11 42 42 H 1.09003 * 109.46654 * 60.00181 * 14 13 12 43 43 H 1.08999 * 109.46771 * 299.99987 * 14 13 12 44 44 H 1.09002 * 109.46862 * 60.00352 * 15 14 13 45 45 H 1.09000 * 109.47019 * 299.99847 * 15 14 13 46 46 H 0.96995 * 120.00097 * 180.02562 * 19 18 16 47 47 H 1.08997 * 109.46130 * 58.27675 * 24 12 11 48 48 H 1.09009 * 109.45958 * 178.23937 * 24 12 11 49 49 H 1.08992 * 109.50283 * 299.23693 * 25 24 12 50 50 H 1.09006 * 109.49884 * 179.12097 * 25 24 12 51 51 H 1.08003 * 120.02983 * 0.02872 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5803 1.2013 -0.0005 5 6 4.2752 0.0072 -0.0005 6 6 5.7822 0.0116 -0.0017 7 6 3.5846 -1.1958 0.0005 8 8 4.2658 -2.3718 0.0011 9 6 3.4946 -3.5683 -0.1239 10 6 4.3680 -4.6810 -0.7100 11 6 3.5542 -5.9749 -0.7861 12 7 3.0949 -6.3456 0.5585 13 6 2.4283 -7.6545 0.5449 14 6 2.1878 -8.1194 1.9826 15 6 1.4930 -9.4825 1.9684 16 6 1.2556 -9.9401 3.3845 17 1 1.5693 -9.3208 4.2118 18 6 0.6388 -11.1496 3.6239 19 7 0.2571 -11.9040 2.6163 20 14 0.3451 -11.7172 5.3791 21 1 -0.9802 -11.2321 5.8411 22 1 0.3748 -13.2010 5.4311 23 1 1.4074 -11.1697 6.2606 24 6 2.2160 -5.3132 1.1226 25 6 2.9899 -3.9996 1.2558 26 6 2.1970 -1.1965 -0.0052 27 1 -0.3632 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8899 0.5137 30 1 1.6565 2.1325 -0.0004 31 1 4.1175 2.1382 -0.0010 32 1 6.1447 0.0125 -1.0297 33 1 6.1433 0.9026 0.5118 34 1 6.1485 -0.8773 0.5120 35 1 2.6451 -3.3870 -0.7824 36 1 5.2379 -4.8353 -0.0715 37 1 4.6957 -4.3978 -1.7103 38 1 4.1777 -6.7728 -1.1897 39 1 2.6921 -5.8238 -1.4357 40 1 3.0597 -8.3785 0.0297 41 1 1.4736 -7.5707 0.0257 42 1 1.5564 -7.3954 2.4977 43 1 3.1426 -8.2032 2.5018 44 1 2.1241 -10.2066 1.4531 45 1 0.5382 -9.3982 1.4493 46 1 -0.1771 -12.7548 2.7848 47 1 1.3601 -5.1655 0.4641 48 1 1.8673 -5.6306 2.1055 49 1 3.8380 -4.1432 1.9251 50 1 2.3327 -3.2296 1.6600 51 1 1.6571 -2.1319 -0.0097 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171034337.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:17 Heat of formation + Delta-G solvation = -54.814010 kcal Electronic energy + Delta-G solvation = -26326.020523 eV Core-core repulsion = 22802.556984 eV Total energy + Delta-G solvation = -3523.463539 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.59221 -39.98071 -38.41726 -36.11490 -34.86152 -34.17538 -32.25967 -32.00576 -30.83054 -30.07821 -28.33822 -26.03723 -25.45438 -24.37073 -24.01504 -22.82395 -21.97275 -21.52733 -20.77742 -18.64434 -18.48976 -17.38567 -16.83455 -16.60290 -16.48099 -16.26042 -16.00846 -15.58106 -15.33752 -15.16489 -14.77456 -14.66022 -14.35367 -14.11750 -14.05481 -13.77706 -13.66072 -13.56877 -13.46483 -13.29372 -12.98838 -12.76774 -12.66919 -12.56298 -12.38616 -12.33306 -12.26185 -12.15745 -12.12682 -11.75281 -11.56930 -11.48668 -11.36457 -11.20798 -11.01106 -10.54960 -9.63106 -9.30496 -8.97879 -8.20567 -6.31302 0.35716 0.49958 1.39358 1.40651 1.52015 2.16539 2.40352 2.76994 2.88463 3.12476 3.61238 3.66715 3.82326 3.86593 3.95623 4.03741 4.11208 4.17362 4.22307 4.29248 4.32950 4.38697 4.41250 4.53170 4.60096 4.70584 4.71601 4.72729 4.78638 4.80619 4.81850 4.84593 4.87918 4.88310 4.91023 4.99670 5.08783 5.11367 5.15926 5.20687 5.27023 5.38011 5.41280 5.52047 5.56854 5.67435 5.74464 5.85926 5.93112 6.05740 6.16247 6.27541 6.48391 6.85443 7.37796 8.91259 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.019697 B = 0.002212 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.172628 B =12657.616212 C =13261.693706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.063 4.063 3 C -0.162 4.162 4 C -0.083 4.083 5 C -0.144 4.144 6 C -0.101 4.101 7 C 0.115 3.885 8 O -0.314 6.314 9 C 0.090 3.910 10 C -0.102 4.102 11 C 0.058 3.942 12 N -0.547 5.547 13 C 0.069 3.931 14 C -0.090 4.090 15 C 0.026 3.974 16 C -0.542 4.542 17 H 0.057 0.943 18 C -0.001 4.001 19 N -0.933 5.933 20 Si 0.964 3.036 21 H -0.272 1.272 22 H -0.281 1.281 23 H -0.265 1.265 24 C 0.057 3.943 25 C -0.129 4.129 26 C -0.220 4.220 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.144 0.856 31 H 0.151 0.849 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.039 0.961 40 H 0.072 0.928 41 H 0.027 0.973 42 H 0.049 0.951 43 H 0.050 0.950 44 H -0.007 1.007 45 H -0.009 1.009 46 H 0.264 0.736 47 H 0.037 0.963 48 H 0.075 0.925 49 H 0.071 0.929 50 H 0.075 0.925 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.288 28.529 -9.164 30.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.064 4.064 3 C -0.180 4.180 4 C -0.101 4.101 5 C -0.144 4.144 6 C -0.157 4.157 7 C 0.070 3.930 8 O -0.228 6.228 9 C 0.034 3.966 10 C -0.140 4.140 11 C -0.070 4.070 12 N -0.272 5.272 13 C -0.059 4.059 14 C -0.128 4.128 15 C -0.012 4.012 16 C -0.580 4.580 17 H 0.076 0.924 18 C -0.199 4.199 19 N -0.573 5.573 20 Si 0.789 3.211 21 H -0.197 1.197 22 H -0.206 1.206 23 H -0.189 1.189 24 C -0.071 4.071 25 C -0.167 4.167 26 C -0.239 4.239 27 H 0.098 0.902 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.161 0.839 31 H 0.169 0.831 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.058 0.942 40 H 0.091 0.909 41 H 0.045 0.955 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.011 0.989 45 H 0.009 0.991 46 H 0.072 0.928 47 H 0.055 0.945 48 H 0.093 0.907 49 H 0.090 0.910 50 H 0.094 0.906 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.837 28.289 -8.897 30.433 hybrid contribution -1.304 -0.965 0.300 1.650 sum 5.532 27.324 -8.598 29.174 Atomic orbital electron populations 1.20858 0.89687 1.03555 1.03117 1.20032 0.97189 0.92463 0.96680 1.21240 0.94351 0.98097 1.04337 1.21181 0.94284 0.97247 0.97369 1.19596 0.97465 0.90557 1.06808 1.20582 0.89720 1.02900 1.02516 1.19090 0.90785 0.86046 0.97066 1.86083 1.36513 1.12486 1.87765 1.22505 0.94470 0.82833 0.96782 1.21570 0.98560 0.91602 1.02223 1.22103 0.98675 0.97345 0.88831 1.61951 1.40184 1.02119 1.22902 1.22003 0.96547 0.90020 0.97302 1.21407 0.99478 0.96539 0.95347 1.18972 0.94115 0.92576 0.95508 1.21681 1.38358 1.04194 0.93758 0.92433 1.25977 0.95357 0.96860 1.01700 1.70093 1.41631 1.12771 1.32832 0.85460 0.78880 0.77355 0.79444 1.19711 1.20634 1.18882 1.22056 0.93644 0.90918 1.00486 1.22049 1.00890 0.96330 0.97472 1.21310 0.92982 0.99569 1.10035 0.90227 0.91650 0.89988 0.83858 0.83129 0.91055 0.90174 0.92415 0.90841 0.90557 0.89119 0.89131 0.94249 0.90932 0.95464 0.93244 0.93109 0.98873 0.99091 0.92766 0.94505 0.90687 0.91010 0.90643 0.85398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.51 10.01 71.24 0.71 -0.79 16 2 C -0.06 -1.13 5.88 -19.88 -0.12 -1.24 16 3 C -0.16 -2.53 9.70 22.29 0.22 -2.31 16 4 C -0.08 -1.31 9.70 22.25 0.22 -1.10 16 5 C -0.14 -2.80 5.89 -19.77 -0.12 -2.92 16 6 C -0.10 -1.61 9.79 71.23 0.70 -0.92 16 7 C 0.12 2.58 6.57 22.51 0.15 2.73 16 8 O -0.31 -7.35 8.85 -92.43 -0.82 -8.17 16 9 C 0.09 1.94 2.17 30.67 0.07 2.00 16 10 C -0.10 -2.07 5.75 30.65 0.18 -1.90 16 11 C 0.06 1.32 5.46 86.33 0.47 1.79 16 12 N -0.55 -15.69 4.66 -896.33 -4.17 -19.86 16 13 C 0.07 2.36 4.96 86.31 0.43 2.78 16 14 C -0.09 -3.77 5.08 30.60 0.16 -3.62 16 15 C 0.03 1.38 4.97 29.85 0.15 1.53 16 16 C -0.54 -31.41 9.11 25.60 0.23 -31.18 16 17 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 18 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 19 N -0.93 -57.27 13.29 21.44 0.28 -56.99 16 20 Si 0.96 44.81 29.54 68.60 2.03 46.84 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 22 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 23 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 24 C 0.06 1.51 5.29 86.33 0.46 1.97 16 25 C -0.13 -3.03 5.38 30.64 0.16 -2.86 16 26 C -0.22 -4.57 7.93 22.37 0.18 -4.39 16 27 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.06 0.88 8.09 -2.39 -0.02 0.86 16 29 H 0.08 0.83 8.08 -2.39 -0.02 0.81 16 30 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 31 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.08 0.96 8.09 -2.39 -0.02 0.94 16 34 H 0.06 1.07 7.53 -2.39 -0.02 1.05 16 35 H 0.07 1.50 6.32 -2.39 -0.02 1.49 16 36 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.09 1.94 8.02 -2.39 -0.02 1.92 16 39 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 2.46 7.99 -2.39 -0.02 2.44 16 41 H 0.03 0.94 8.12 -2.39 -0.02 0.92 16 42 H 0.05 2.03 6.43 -2.39 -0.02 2.02 16 43 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 44 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 45 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 46 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 47 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.07 2.21 6.21 -2.38 -0.01 2.20 16 49 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 50 H 0.08 1.67 6.90 -2.38 -0.02 1.66 16 51 H 0.13 2.56 5.40 -2.91 -0.02 2.54 16 Total: -1.00 -66.40 397.52 2.89 -63.50 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.88 Total: 14.72 kcal Atomic # 6 Polarization: -44.74 SS G_CDS: 4.70 Total: -40.04 kcal Atomic # 7 Polarization: -72.96 SS G_CDS: -3.89 Total: -76.85 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: -0.82 Total: -8.17 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -66.40 2.89 -63.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171034337.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.690 kcal (2) G-P(sol) polarization free energy of solvation -66.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds