Wall clock time and date at job start Tue Mar 31 2020 12:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47222 * 2 1 4 4 C 1.52997 * 109.47265 * 239.99243 * 2 1 3 5 5 C 1.50704 * 109.46560 * 119.99730 * 2 1 3 6 6 C 1.38234 * 120.00277 * 60.00257 * 5 2 1 7 7 C 1.38230 * 119.99885 * 180.02562 * 6 5 2 8 8 C 1.38235 * 120.00326 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00236 * 179.70551 * 8 7 6 10 10 C 1.52996 * 109.47203 * 89.99823 * 9 8 7 11 11 C 1.50702 * 109.46822 * 180.02562 * 10 9 8 12 12 O 1.21284 * 120.00194 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99958 * 180.02562 * 11 10 9 14 14 C 1.46493 * 119.99899 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.46937 * 180.02562 * 14 13 11 16 16 C 1.53003 * 109.47161 * 179.97438 * 15 14 13 17 17 C 1.50702 * 109.47261 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99777 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00353 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99696 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00143 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47322 * 90.00041 * 21 19 17 23 23 H 1.48509 * 109.46921 * 210.00209 * 21 19 17 24 24 H 1.48501 * 109.47211 * 329.99927 * 21 19 17 25 25 C 1.38234 * 119.99814 * 359.97438 * 8 7 6 26 26 C 1.38235 * 119.99518 * 240.01939 * 5 2 1 27 27 H 1.08997 * 109.47500 * 300.00350 * 1 2 3 28 28 H 1.08999 * 109.46956 * 60.00519 * 1 2 3 29 29 H 1.08994 * 109.47499 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47229 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.46988 * 299.99613 * 3 2 1 32 32 H 1.08997 * 109.47601 * 59.99131 * 3 2 1 33 33 H 1.09000 * 109.47416 * 300.00969 * 4 2 1 34 34 H 1.08999 * 109.46939 * 60.00228 * 4 2 1 35 35 H 1.08993 * 109.47194 * 180.02562 * 4 2 1 36 36 H 1.07992 * 119.99701 * 359.97438 * 6 5 2 37 37 H 1.08000 * 120.00356 * 179.97438 * 7 6 5 38 38 H 1.09003 * 109.46871 * 209.99878 * 9 8 7 39 39 H 1.09001 * 109.47017 * 329.99216 * 9 8 7 40 40 H 1.08994 * 109.47503 * 299.99842 * 10 9 8 41 41 H 1.09001 * 109.47176 * 60.00391 * 10 9 8 42 42 H 0.97001 * 119.99437 * 359.97438 * 13 11 10 43 43 H 1.09003 * 109.46881 * 299.99491 * 14 13 11 44 44 H 1.08996 * 109.47538 * 59.99579 * 14 13 11 45 45 H 1.09003 * 109.46883 * 299.99445 * 15 14 13 46 46 H 1.08996 * 109.47387 * 59.99442 * 15 14 13 47 47 H 1.08994 * 109.46745 * 299.99808 * 16 15 14 48 48 H 1.09001 * 109.46966 * 59.99764 * 16 15 14 49 49 H 0.96996 * 120.00019 * 180.02562 * 20 19 17 50 50 H 1.08001 * 120.00299 * 179.97438 * 25 8 7 51 51 H 1.07997 * 120.00423 * 359.97438 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0322 -0.7104 1.2306 6 6 1.6982 -2.0338 1.4494 7 6 2.1585 -2.6852 2.5784 8 6 2.9531 -2.0133 3.4884 9 6 3.4494 -2.7215 4.7226 10 6 4.7956 -3.3843 4.4237 11 6 5.2915 -4.0930 5.6578 12 8 4.6332 -4.0698 6.6762 13 7 6.4670 -4.7518 5.6301 14 6 6.9488 -5.4412 6.8295 15 6 8.2957 -6.1028 6.5311 16 6 8.7992 -6.8223 7.7840 17 6 10.1255 -7.4745 7.4899 18 1 10.5652 -7.3852 6.5074 19 6 10.7778 -8.1853 8.4750 20 7 10.2422 -8.2945 9.6711 21 14 12.4222 -8.9931 8.1106 22 1 13.5200 -8.0413 8.4169 23 1 12.5729 -10.2093 8.9495 24 1 12.4808 -9.3712 6.6757 25 6 3.2880 -0.6902 3.2690 26 6 2.8265 -0.0384 2.1407 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6766 -1.7490 -1.2491 34 1 1.6767 -0.2076 -2.1391 35 1 3.1300 -0.7218 -1.2489 36 1 1.0771 -2.5585 0.7387 37 1 1.8973 -3.7190 2.7496 38 1 3.5709 -2.0006 5.5310 39 1 2.7277 -3.4824 5.0198 40 1 4.6742 -4.1053 3.6153 41 1 5.5172 -2.6234 4.1266 42 1 6.9936 -4.7700 4.8156 43 1 7.0697 -4.7209 7.6387 44 1 6.2272 -6.2025 7.1256 45 1 8.1752 -6.8230 5.7218 46 1 9.0170 -5.3411 6.2353 47 1 8.9197 -6.1018 8.5929 48 1 8.0779 -7.5839 8.0802 49 1 10.7012 -8.7942 10.3643 50 1 3.9085 -0.1651 3.9801 51 1 3.0876 0.9955 1.9697 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171505650.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:37 Heat of formation + Delta-G solvation = -61.434927 kcal Electronic energy + Delta-G solvation = -24872.710457 eV Core-core repulsion = 21348.959813 eV Total energy + Delta-G solvation = -3523.750644 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.31501 -39.46295 -37.11763 -35.43855 -33.50241 -33.28363 -31.36582 -31.25185 -29.39056 -27.78081 -27.66198 -26.82439 -24.81651 -22.92481 -22.60962 -21.63718 -20.70572 -19.77109 -19.49377 -17.18127 -16.57840 -16.33417 -16.05738 -15.40160 -15.36304 -15.13144 -14.68287 -14.45944 -14.39630 -14.29577 -13.98652 -13.69093 -13.53845 -13.13223 -12.97019 -12.70025 -12.42375 -12.29160 -12.12565 -12.00926 -11.83328 -11.80017 -11.76521 -11.64688 -11.31580 -11.17592 -10.90756 -10.89570 -10.77925 -10.73437 -10.60072 -9.87658 -9.87127 -9.37667 -9.13575 -9.12292 -8.76223 -8.71464 -8.37764 -6.02329 -4.05529 1.09179 1.18520 2.80731 3.30368 3.35341 3.37095 3.40032 3.57509 4.19523 4.33241 4.43760 4.57846 4.60540 4.69414 4.77998 4.87636 4.89815 4.99416 5.13095 5.13953 5.19867 5.24965 5.33417 5.33497 5.34039 5.44640 5.45674 5.46317 5.56911 5.64465 5.66093 5.74542 5.78137 5.80772 5.82257 5.87964 5.90582 6.03023 6.16320 6.24047 6.38286 6.45399 6.50224 6.59703 6.78578 6.83715 7.00267 7.62912 7.72825 7.75525 7.96359 8.36727 8.42453 9.01126 9.58697 11.08939 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.030553 B = 0.001562 C = 0.001527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.231252 B =17925.857855 C =18335.181313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.030 4.030 3 C -0.144 4.144 4 C -0.138 4.138 5 C -0.077 4.077 6 C -0.114 4.114 7 C -0.113 4.113 8 C -0.083 4.083 9 C -0.065 4.065 10 C -0.134 4.134 11 C 0.505 3.495 12 O -0.546 6.546 13 N -0.728 5.728 14 C 0.116 3.884 15 C -0.121 4.121 16 C 0.023 3.977 17 C -0.523 4.523 18 H 0.055 0.945 19 C 0.057 3.943 20 N -0.893 5.893 21 Si 0.893 3.107 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 C -0.114 4.114 26 C -0.120 4.120 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.398 0.602 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.019 0.981 48 H 0.019 0.981 49 H 0.261 0.739 50 H 0.121 0.879 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.301 18.685 -22.263 34.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.030 4.030 3 C -0.201 4.201 4 C -0.196 4.196 5 C -0.077 4.077 6 C -0.132 4.132 7 C -0.132 4.132 8 C -0.083 4.083 9 C -0.103 4.103 10 C -0.174 4.174 11 C 0.292 3.708 12 O -0.424 6.424 13 N -0.378 5.378 14 C -0.007 4.007 15 C -0.159 4.159 16 C -0.014 4.014 17 C -0.561 4.561 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.532 5.532 21 Si 0.721 3.279 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.132 4.132 26 C -0.138 4.138 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.232 0.768 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.037 0.963 48 H 0.037 0.963 49 H 0.071 0.929 50 H 0.139 0.861 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -19.739 18.607 -21.335 34.512 hybrid contribution 1.274 -0.566 -0.469 1.471 sum -18.465 18.041 -21.805 33.792 Atomic orbital electron populations 1.21890 0.93748 1.02080 1.01852 1.19499 0.95659 0.95035 0.92810 1.21965 1.01251 0.95001 1.01929 1.21889 1.01318 1.00213 0.96151 1.19781 0.97946 0.94105 0.95824 1.20935 1.00366 0.94319 0.97582 1.21058 0.98004 0.99857 0.94232 1.19933 0.97724 0.94284 0.96402 1.20330 0.95611 0.99843 0.94502 1.21648 0.98292 1.00711 0.96770 1.20667 0.81122 0.79046 0.90016 1.90701 1.56559 1.61421 1.33743 1.46250 1.21882 1.53743 1.15960 1.21635 0.96885 0.95866 0.86326 1.21886 0.93058 0.99045 1.01891 1.19035 0.95943 0.95163 0.91302 1.21208 1.04850 1.32575 0.97509 0.92649 1.25030 0.97888 0.96431 0.95107 1.69966 1.38765 1.41690 1.02820 0.86576 0.84117 0.78963 0.78224 1.20659 1.21193 1.19907 1.21089 1.00072 0.94343 0.97671 1.21158 0.98216 1.00087 0.94297 0.92493 0.92397 0.92425 0.92214 0.92419 0.92253 0.92419 0.92400 0.92436 0.86346 0.86068 0.90179 0.90180 0.88959 0.88949 0.76808 0.91838 0.91836 0.92749 0.92751 0.96276 0.96272 0.92927 0.86070 0.85783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 8.29 37.16 0.31 -0.46 16 2 C -0.03 -0.18 0.85 -155.66 -0.13 -0.31 16 3 C -0.14 -0.76 7.13 37.16 0.26 -0.50 16 4 C -0.14 -0.77 8.29 37.16 0.31 -0.47 16 5 C -0.08 -0.59 4.76 -104.62 -0.50 -1.09 16 6 C -0.11 -0.91 8.71 -39.59 -0.34 -1.26 16 7 C -0.11 -0.99 9.70 -39.59 -0.38 -1.37 16 8 C -0.08 -0.77 5.13 -104.62 -0.54 -1.31 16 9 C -0.07 -0.66 4.63 -27.88 -0.13 -0.79 16 10 C -0.13 -1.32 5.68 -27.88 -0.16 -1.48 16 11 C 0.51 7.21 7.83 -10.98 -0.09 7.12 16 12 O -0.55 -10.07 15.98 5.55 0.09 -9.98 16 13 N -0.73 -10.26 5.56 -60.30 -0.33 -10.60 16 14 C 0.12 2.05 5.67 -4.05 -0.02 2.02 16 15 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 16 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 17 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 18 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 21 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 25 C -0.11 -0.99 9.70 -39.58 -0.38 -1.38 16 26 C -0.12 -0.96 8.98 -39.58 -0.36 -1.32 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.31 7.39 -51.93 -0.38 -0.07 16 30 H 0.06 0.32 7.52 -51.93 -0.39 -0.07 16 31 H 0.06 0.26 8.14 -51.92 -0.42 -0.16 16 32 H 0.06 0.31 7.51 -51.93 -0.39 -0.08 16 33 H 0.06 0.32 7.39 -51.93 -0.38 -0.07 16 34 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.12 0.78 7.10 -52.49 -0.37 0.40 16 37 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 38 H 0.08 0.88 8.04 -51.93 -0.42 0.46 16 39 H 0.08 0.88 8.04 -51.93 -0.42 0.46 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.40 4.46 8.47 -40.82 -0.35 4.11 16 43 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 45 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 49 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 50 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 51 H 0.12 0.81 5.90 -52.49 -0.31 0.50 16 LS Contribution 411.23 15.07 6.20 6.20 Total: -1.00 -32.52 411.23 -10.47 -42.99 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -9.29 Total: -0.90 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -2.84 Total: -18.08 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.40 Total: -36.71 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.52 -10.47 -42.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171505650.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.440 kcal (2) G-P(sol) polarization free energy of solvation -32.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds