Wall clock time and date at job start Tue Mar 31 2020 11:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 110.05866 * 2 1 4 4 C 1.54372 * 110.04452 * 238.53145 * 2 1 3 5 5 C 1.54891 * 104.19733 * 217.09410 * 4 2 1 6 6 C 1.54888 * 102.75035 * 37.96442 * 5 4 2 7 7 C 1.53869 * 110.03361 * 121.42183 * 2 1 3 8 8 H 1.09000 * 110.03735 * 238.61643 * 7 2 1 9 9 N 1.46907 * 110.03273 * 359.97438 * 7 2 1 10 10 C 1.46905 * 111.00068 * 204.31355 * 9 7 2 11 11 C 1.50697 * 109.46789 * 179.97438 * 10 9 7 12 12 C 1.38285 * 119.97318 * 269.96969 * 11 10 9 13 13 C 1.38238 * 120.11130 * 179.97438 * 12 11 10 14 14 C 1.38163 * 120.06019 * 359.77382 * 13 12 11 15 15 C 1.38716 * 119.93782 * 0.52783 * 14 13 12 16 16 O 1.35901 * 120.05114 * 179.72196 * 15 14 13 17 17 C 1.42895 * 117.00475 * 359.72606 * 16 15 14 18 18 C 1.52997 * 109.47269 * 179.97438 * 17 16 15 19 19 C 1.50706 * 109.47238 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99515 * 0.02562 * 19 18 17 21 21 C 1.37870 * 120.00176 * 180.02562 * 19 18 17 22 22 N 1.31520 * 119.99883 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00043 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47288 * 59.99994 * 23 21 19 25 25 H 1.48503 * 109.47086 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.46819 * 299.99648 * 23 21 19 27 27 C 1.38128 * 119.97174 * 90.00226 * 11 10 9 28 28 H 1.08998 * 109.46813 * 298.58388 * 1 2 3 29 29 H 1.09000 * 109.47148 * 58.57521 * 1 2 3 30 30 H 1.08995 * 109.47272 * 178.58161 * 1 2 3 31 31 H 1.09000 * 109.47332 * 181.41682 * 3 2 1 32 32 H 1.08993 * 109.47351 * 301.42315 * 3 2 1 33 33 H 1.09005 * 109.46810 * 61.42140 * 3 2 1 34 34 H 1.08998 * 110.46606 * 98.42653 * 4 2 1 35 35 H 1.09000 * 110.62080 * 335.83200 * 4 2 1 36 36 H 1.09000 * 110.75280 * 279.65311 * 5 4 2 37 37 H 1.09001 * 110.91898 * 156.35566 * 5 4 2 38 38 H 1.09004 * 110.48756 * 203.38183 * 6 5 4 39 39 H 1.09004 * 110.48488 * 80.73604 * 6 5 4 40 40 H 1.00893 * 111.00083 * 80.35529 * 9 7 2 41 41 H 1.08998 * 109.47263 * 59.99527 * 10 9 7 42 42 H 1.09001 * 109.46686 * 299.99655 * 10 9 7 43 43 H 1.08001 * 119.93949 * 0.02562 * 12 11 10 44 44 H 1.08001 * 119.96952 * 180.02562 * 13 12 11 45 45 H 1.08001 * 120.03413 * 180.24755 * 14 13 12 46 46 H 1.09001 * 109.47102 * 60.00155 * 17 16 15 47 47 H 1.09004 * 109.47055 * 300.00096 * 17 16 15 48 48 H 1.09001 * 109.46832 * 60.00112 * 18 17 16 49 49 H 1.09000 * 109.47611 * 300.00409 * 18 17 16 50 50 H 0.97004 * 119.99507 * 180.02562 * 22 21 19 51 51 H 1.07999 * 120.02408 * 0.02562 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0548 1.4372 0.0000 4 6 2.0591 -0.7571 -1.2369 5 6 3.3145 -1.5015 -0.7184 6 6 2.8882 -1.9407 0.7044 7 6 2.0571 -0.7536 1.2336 8 1 2.6861 -0.0953 1.8329 9 7 0.9328 -1.2461 2.0408 10 6 1.3346 -1.4395 3.4406 11 6 0.1579 -1.9433 4.2359 12 6 -0.6977 -1.0457 4.8478 13 6 -1.7782 -1.5048 5.5775 14 6 -2.0087 -2.8621 5.6934 15 6 -1.1483 -3.7647 5.0858 16 8 -1.3696 -5.1005 5.2030 17 6 -2.5041 -5.5052 5.9718 18 6 -2.5894 -7.0327 5.9898 19 6 -3.7855 -7.4595 6.8012 20 1 -4.4214 -6.7156 7.2579 21 6 -4.0679 -8.7995 6.9604 22 7 -3.2931 -9.7054 6.4046 23 14 -5.5509 -9.3286 7.9655 24 1 -6.7856 -8.7716 7.3569 25 1 -5.6336 -10.8112 7.9831 26 1 -5.4127 -8.8235 9.3552 27 6 -0.0647 -3.3015 4.3535 28 1 -0.3633 0.4917 0.9024 29 1 -0.3633 0.5358 -0.8769 30 1 -0.3633 -1.0273 -0.0254 31 1 3.1444 1.4262 -0.0254 32 1 1.6762 1.9623 -0.8769 33 1 1.7176 1.9471 0.9025 34 1 2.3303 -0.0556 -2.0259 35 1 1.3163 -1.4681 -1.5986 36 1 4.1715 -0.8294 -0.6746 37 1 3.5371 -2.3688 -1.3399 38 1 3.7644 -2.1030 1.3322 39 1 2.2782 -2.8429 0.6584 40 1 0.5541 -2.0968 1.6525 41 1 1.6737 -0.4904 3.8557 42 1 2.1447 -2.1672 3.4888 43 1 -0.5218 0.0158 4.7546 44 1 -2.4453 -0.8016 6.0542 45 1 -2.8554 -3.2202 6.2603 46 1 -3.4104 -5.0963 5.5251 47 1 -2.4027 -5.1345 6.9919 48 1 -1.6832 -7.4419 6.4364 49 1 -2.6909 -7.4030 4.9697 50 1 -3.4921 -10.6482 6.5164 51 1 0.6044 -4.0021 3.8762 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175868391.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:43 Heat of formation + Delta-G solvation = -42.325128 kcal Electronic energy + Delta-G solvation = -25961.905140 eV Core-core repulsion = 22438.983159 eV Total energy + Delta-G solvation = -3522.921981 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.02878 -39.55671 -37.40345 -34.84579 -33.37321 -32.40247 -31.16409 -30.69723 -29.15241 -27.65308 -27.36561 -25.36779 -24.79362 -23.78356 -22.26510 -21.66185 -21.09345 -20.17859 -18.81987 -17.58518 -16.31619 -16.03980 -15.92540 -15.61002 -15.48901 -15.30851 -14.81701 -14.52972 -14.32321 -14.08123 -13.66022 -13.61678 -13.21879 -13.05989 -12.81963 -12.69130 -12.37114 -12.30012 -12.14242 -12.01400 -11.61882 -11.39416 -11.33912 -11.28269 -11.25427 -10.96078 -10.86337 -10.82965 -10.72133 -10.69344 -10.58380 -10.41229 -9.85248 -9.66321 -9.31865 -8.78918 -8.46195 -8.44015 -7.81961 -6.10810 -4.15575 1.45701 1.71803 3.28345 3.32648 3.34418 3.76476 3.86577 4.18504 4.22463 4.36112 4.41047 4.62740 4.80797 4.97368 4.99800 5.05543 5.08296 5.11787 5.22619 5.24537 5.25453 5.31154 5.36865 5.49742 5.50532 5.52711 5.57789 5.64290 5.67846 5.69770 5.73248 5.79543 5.84443 5.86768 5.95821 6.03449 6.06992 6.08363 6.17785 6.20342 6.36759 6.56651 6.57298 6.73272 6.74048 6.87380 7.01749 7.20989 7.50051 7.63305 7.81065 8.06609 8.23317 8.89744 9.48687 11.00700 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.021501 B = 0.002085 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.964834 B =13422.934104 C =14078.227089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.060 4.060 3 C -0.136 4.136 4 C -0.118 4.118 5 C -0.122 4.122 6 C -0.155 4.155 7 C 0.091 3.909 8 H 0.079 0.921 9 N -0.673 5.673 10 C 0.101 3.899 11 C -0.050 4.050 12 C -0.149 4.149 13 C -0.082 4.082 14 C -0.211 4.211 15 C 0.145 3.855 16 O -0.317 6.317 17 C 0.066 3.934 18 C 0.026 3.974 19 C -0.527 4.527 20 H 0.058 0.942 21 C 0.060 3.940 22 N -0.890 5.890 23 Si 0.900 3.100 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.275 1.275 27 C -0.157 4.157 28 H 0.066 0.934 29 H 0.039 0.961 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.345 0.655 41 H 0.078 0.922 42 H 0.038 0.962 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.129 0.871 46 H 0.050 0.950 47 H 0.050 0.950 48 H 0.027 0.973 49 H 0.027 0.973 50 H 0.264 0.736 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.330 22.207 -12.324 28.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.061 4.061 3 C -0.193 4.193 4 C -0.156 4.156 5 C -0.160 4.160 6 C -0.195 4.195 7 C -0.019 4.019 8 H 0.098 0.902 9 N -0.303 5.303 10 C -0.027 4.027 11 C -0.050 4.050 12 C -0.168 4.168 13 C -0.100 4.100 14 C -0.230 4.230 15 C 0.098 3.902 16 O -0.230 6.230 17 C -0.008 4.008 18 C -0.012 4.012 19 C -0.565 4.565 20 H 0.076 0.924 21 C -0.142 4.142 22 N -0.528 5.528 23 Si 0.727 3.273 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.201 1.201 27 C -0.176 4.176 28 H 0.085 0.915 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.165 0.835 41 H 0.097 0.903 42 H 0.056 0.944 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.147 0.853 46 H 0.069 0.931 47 H 0.068 0.932 48 H 0.046 0.954 49 H 0.046 0.954 50 H 0.073 0.927 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 12.190 22.457 -12.292 28.355 hybrid contribution -0.453 -1.183 0.666 1.431 sum 11.737 21.274 -11.626 26.935 Atomic orbital electron populations 1.21586 0.93323 1.01697 1.01012 1.21186 0.96666 0.94721 0.93537 1.21870 1.00354 0.95366 1.01730 1.22540 0.97147 0.98854 0.97034 1.22402 0.97790 0.99828 0.95973 1.23143 1.00445 0.98784 0.97096 1.22312 0.90407 0.95308 0.93888 0.90249 1.60743 1.31394 1.37029 1.01136 1.20866 0.93553 1.00094 0.88210 1.19400 0.96352 0.92115 0.97156 1.20745 0.96260 0.99005 1.00768 1.20892 0.96910 0.94707 0.97465 1.21388 1.02127 0.93897 1.05582 1.19147 0.93503 0.83981 0.93585 1.86165 1.48963 1.18512 1.69376 1.23320 0.84469 1.00340 0.92716 1.19118 0.97978 0.85566 0.98489 1.20933 1.10811 0.92042 1.32727 0.92415 1.24994 0.96883 0.96563 0.95776 1.69971 1.37964 1.01048 1.43789 0.86539 0.82737 0.77483 0.80562 1.20082 1.21114 1.20086 1.20266 0.98762 0.94941 1.03635 0.91506 0.94219 0.92842 0.93038 0.92784 0.92531 0.91783 0.91482 0.91660 0.91729 0.91777 0.91320 0.83519 0.90322 0.94362 0.86434 0.86244 0.85337 0.93147 0.93165 0.95438 0.95425 0.92650 0.85897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 7.38 37.16 0.27 -0.73 16 2 C -0.06 -0.45 0.94 -153.34 -0.14 -0.60 16 3 C -0.14 -0.92 8.15 37.16 0.30 -0.61 16 4 C -0.12 -0.83 5.90 -25.01 -0.15 -0.98 16 5 C -0.12 -0.83 6.91 -24.74 -0.17 -1.00 16 6 C -0.16 -1.18 6.43 -25.07 -0.16 -1.34 16 7 C 0.09 0.72 2.86 -66.59 -0.19 0.53 16 8 H 0.08 0.63 7.35 -51.93 -0.38 0.25 16 9 N -0.67 -6.16 4.44 -106.81 -0.47 -6.64 16 10 C 0.10 0.99 5.64 -4.97 -0.03 0.97 16 11 C -0.05 -0.62 5.39 -104.65 -0.56 -1.19 16 12 C -0.15 -1.84 9.70 -39.56 -0.38 -2.22 16 13 C -0.08 -1.08 10.04 -39.61 -0.40 -1.48 16 14 C -0.21 -3.34 9.04 -39.43 -0.36 -3.69 16 15 C 0.14 2.54 6.69 -39.22 -0.26 2.28 16 16 O -0.32 -6.59 10.14 -19.43 -0.20 -6.78 16 17 C 0.07 1.42 4.68 37.16 0.17 1.59 16 18 C 0.03 0.68 5.34 -27.88 -0.15 0.53 16 19 C -0.53 -14.74 9.11 -34.44 -0.31 -15.06 16 20 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 21 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 22 N -0.89 -26.53 13.29 55.43 0.74 -25.80 16 23 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 C -0.16 -2.35 9.64 -39.43 -0.38 -2.73 16 28 H 0.07 0.64 7.81 -51.93 -0.41 0.23 16 29 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.49 7.47 -51.93 -0.39 0.10 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.42 7.84 -51.93 -0.41 0.01 16 35 H 0.07 0.50 7.85 -51.93 -0.41 0.09 16 36 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.57 7.57 -51.93 -0.39 0.18 16 40 H 0.35 3.40 7.64 -39.30 -0.30 3.10 16 41 H 0.08 0.71 8.01 -51.93 -0.42 0.30 16 42 H 0.04 0.37 8.07 -51.93 -0.42 -0.05 16 43 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 44 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 45 H 0.13 2.01 6.30 -52.49 -0.33 1.68 16 46 H 0.05 1.04 7.65 -51.93 -0.40 0.64 16 47 H 0.05 1.04 7.67 -51.93 -0.40 0.64 16 48 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 49 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 51 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 402.73 15.07 6.07 6.07 Total: -1.00 -29.33 402.73 -11.14 -40.47 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -9.26 Total: 0.51 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: -3.00 Total: -24.13 kcal Atomic # 7 Polarization: -32.70 SS G_CDS: 0.26 Total: -32.43 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -0.20 Total: -6.78 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -29.33 -11.14 -40.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175868391.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.854 kcal (2) G-P(sol) polarization free energy of solvation -29.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds