Wall clock time and date at job start Tue Mar 31 2020 11:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 110.05661 * 2 1 4 4 C 1.54269 * 110.03394 * 238.58265 * 2 1 3 5 5 C 1.54890 * 104.19191 * 264.32705 * 4 2 1 6 6 C 1.54890 * 102.74986 * 322.05394 * 5 4 2 7 7 C 1.53877 * 110.03338 * 121.41147 * 2 1 3 8 8 H 1.08999 * 110.03179 * 359.95871 * 7 2 1 9 9 N 1.46896 * 110.03326 * 238.57090 * 7 2 1 10 10 C 1.46904 * 110.99845 * 164.90329 * 9 7 2 11 11 C 1.50695 * 109.47153 * 179.97438 * 10 9 7 12 12 C 1.38294 * 119.97081 * 90.00164 * 11 10 9 13 13 C 1.38239 * 120.11438 * 180.02562 * 12 11 10 14 14 C 1.38170 * 120.05475 * 359.97438 * 13 12 11 15 15 C 1.38715 * 119.94449 * 0.02562 * 14 13 12 16 16 O 1.35894 * 120.05632 * 180.02562 * 15 14 13 17 17 C 1.42904 * 116.99904 * 359.97438 * 16 15 14 18 18 C 1.53003 * 109.47256 * 179.97438 * 17 16 15 19 19 C 1.50693 * 109.47478 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99789 * 0.27475 * 19 18 17 21 21 C 1.37873 * 120.00492 * 180.02562 * 19 18 17 22 22 N 1.31521 * 119.99556 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00583 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47088 * 89.99662 * 23 21 19 25 25 H 1.48499 * 109.47480 * 210.00301 * 23 21 19 26 26 H 1.48501 * 109.46765 * 330.00024 * 23 21 19 27 27 C 1.38118 * 119.97530 * 270.25653 * 11 10 9 28 28 H 1.09004 * 109.47108 * 298.58541 * 1 2 3 29 29 H 1.08998 * 109.47349 * 58.58118 * 1 2 3 30 30 H 1.09000 * 109.47154 * 178.58865 * 1 2 3 31 31 H 1.08994 * 109.47468 * 175.03915 * 3 2 1 32 32 H 1.09007 * 109.46785 * 295.03480 * 3 2 1 33 33 H 1.08995 * 109.47120 * 55.03317 * 3 2 1 34 34 H 1.09000 * 110.48366 * 23.00161 * 4 2 1 35 35 H 1.08997 * 110.48754 * 145.51617 * 4 2 1 36 36 H 1.08996 * 110.75936 * 80.37342 * 5 4 2 37 37 H 1.09006 * 110.75173 * 203.73907 * 5 4 2 38 38 H 1.09004 * 110.48257 * 279.26786 * 6 5 4 39 39 H 1.09000 * 110.48717 * 156.62470 * 6 5 4 40 40 H 1.00896 * 111.00528 * 40.94989 * 9 7 2 41 41 H 1.09010 * 109.47059 * 59.99869 * 10 9 7 42 42 H 1.08994 * 109.47275 * 300.00038 * 10 9 7 43 43 H 1.08001 * 119.94308 * 0.02562 * 12 11 10 44 44 H 1.07998 * 119.97287 * 179.97438 * 13 12 11 45 45 H 1.08003 * 120.02700 * 179.97438 * 14 13 12 46 46 H 1.09003 * 109.47133 * 60.00410 * 17 16 15 47 47 H 1.08996 * 109.47386 * 299.99905 * 17 16 15 48 48 H 1.09007 * 109.46784 * 59.99648 * 18 17 16 49 49 H 1.08996 * 109.46854 * 300.00241 * 18 17 16 50 50 H 0.96998 * 119.99865 * 179.97438 * 22 21 19 51 51 H 1.08000 * 120.03181 * 0.02562 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4373 0.0000 4 6 2.0585 -0.7555 -1.2369 5 6 2.3280 -2.1902 -0.7190 6 6 2.8875 -1.9406 0.7036 7 6 2.0571 -0.7534 1.2338 8 1 1.2229 -1.1185 1.8329 9 7 2.9056 0.1337 2.0406 10 6 3.1273 -0.4256 3.3808 11 6 4.0003 0.5095 4.1773 12 6 3.4255 1.5085 4.9416 13 6 4.2236 2.3683 5.6729 14 6 5.5981 2.2311 5.6423 15 6 6.1772 1.2299 4.8764 16 8 7.5288 1.0926 4.8450 17 6 8.2928 2.0147 5.6247 18 6 9.7828 1.7056 5.4651 19 6 10.5885 2.6776 6.2878 20 1 10.0877 3.4369 6.8703 21 6 11.9647 2.5944 6.3012 22 7 12.5742 1.6664 5.5962 23 14 12.9635 3.7997 7.3205 24 1 13.1648 3.2470 8.6840 25 1 14.2830 4.0191 6.6754 26 1 12.2366 5.0914 7.4124 27 6 5.3740 0.3715 4.1391 28 1 -0.3633 0.4917 0.9024 29 1 -0.3634 0.5357 -0.8770 30 1 -0.3633 -1.0273 -0.0253 31 1 3.1410 1.4275 0.0889 32 1 1.7708 1.9277 -0.9312 33 1 1.6261 1.9805 0.8421 34 1 1.3061 -0.7696 -2.0254 35 1 2.9799 -0.2987 -1.5980 36 1 1.4031 -2.7651 -0.6750 37 1 3.0675 -2.6931 -1.3422 38 1 3.9440 -1.6766 0.6571 39 1 2.7402 -2.8196 1.3311 40 1 2.5100 1.0602 2.0964 41 1 3.6185 -1.3948 3.2934 42 1 2.1695 -0.5480 3.8864 43 1 2.3513 1.6171 4.9672 44 1 3.7724 3.1478 6.2688 45 1 6.2213 2.9033 6.2135 46 1 8.0134 1.9219 6.6742 47 1 8.0937 3.0308 5.2842 48 1 10.0626 1.7980 4.4156 49 1 9.9816 0.6896 5.8059 50 1 13.5424 1.6081 5.6053 51 1 5.8227 -0.4059 3.5385 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175868406.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:46 Heat of formation + Delta-G solvation = -39.041015 kcal Electronic energy + Delta-G solvation = -25972.950899 eV Core-core repulsion = 22450.171328 eV Total energy + Delta-G solvation = -3522.779571 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.05338 -39.56703 -37.39751 -34.80935 -33.35601 -32.53181 -31.16344 -30.67509 -29.14344 -27.80047 -27.37159 -25.41749 -24.80862 -23.86271 -22.34379 -21.63644 -20.76826 -20.09159 -18.76536 -17.55757 -16.31235 -16.16114 -15.88443 -15.66668 -15.52510 -15.29012 -15.18091 -14.51411 -14.46158 -13.96224 -13.77133 -13.44176 -13.32488 -13.03762 -12.89840 -12.66683 -12.31459 -12.27995 -12.12523 -11.87004 -11.63602 -11.37805 -11.31414 -11.28017 -11.16922 -11.02386 -10.86949 -10.78836 -10.76577 -10.72265 -10.62890 -10.39761 -9.84399 -9.64662 -9.28966 -8.74341 -8.52256 -8.43858 -7.81729 -6.09454 -4.14070 1.47589 1.70082 3.27872 3.33764 3.36662 3.78316 3.87609 4.19489 4.21709 4.29583 4.41695 4.61951 4.85457 4.96521 5.00372 5.03469 5.06039 5.12354 5.16605 5.23911 5.26853 5.30238 5.35081 5.42129 5.46805 5.50089 5.54216 5.64629 5.68682 5.71032 5.72415 5.77335 5.86280 5.88653 5.96386 6.01918 6.05237 6.08572 6.14822 6.20129 6.22165 6.57131 6.59459 6.70527 6.75511 6.87255 7.03085 7.23194 7.52293 7.65558 7.82816 8.08858 8.25027 8.91502 9.50115 11.02120 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.020889 B = 0.002100 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.123611 B =13332.499331 C =13981.364954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.069 4.069 3 C -0.141 4.141 4 C -0.111 4.111 5 C -0.124 4.124 6 C -0.117 4.117 7 C 0.091 3.909 8 H 0.042 0.958 9 N -0.676 5.676 10 C 0.100 3.900 11 C -0.050 4.050 12 C -0.168 4.168 13 C -0.080 4.080 14 C -0.212 4.212 15 C 0.145 3.855 16 O -0.315 6.315 17 C 0.065 3.935 18 C 0.025 3.975 19 C -0.526 4.526 20 H 0.058 0.942 21 C 0.060 3.940 22 N -0.889 5.889 23 Si 0.899 3.101 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.273 1.273 27 C -0.138 4.138 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.345 0.655 41 H 0.080 0.920 42 H 0.036 0.964 43 H 0.113 0.887 44 H 0.119 0.881 45 H 0.129 0.871 46 H 0.050 0.950 47 H 0.050 0.950 48 H 0.028 0.972 49 H 0.027 0.973 50 H 0.263 0.737 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.564 -4.573 -10.183 28.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.069 4.069 3 C -0.198 4.198 4 C -0.149 4.149 5 C -0.162 4.162 6 C -0.155 4.155 7 C -0.019 4.019 8 H 0.060 0.940 9 N -0.310 5.310 10 C -0.028 4.028 11 C -0.050 4.050 12 C -0.187 4.187 13 C -0.099 4.099 14 C -0.231 4.231 15 C 0.098 3.902 16 O -0.229 6.229 17 C -0.009 4.009 18 C -0.012 4.012 19 C -0.564 4.564 20 H 0.076 0.924 21 C -0.142 4.142 22 N -0.527 5.527 23 Si 0.726 3.274 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.198 1.198 27 C -0.157 4.157 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.167 0.833 41 H 0.099 0.901 42 H 0.054 0.946 43 H 0.131 0.869 44 H 0.137 0.863 45 H 0.147 0.853 46 H 0.068 0.932 47 H 0.068 0.932 48 H 0.046 0.954 49 H 0.046 0.954 50 H 0.073 0.927 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -25.670 -5.019 -10.580 28.215 hybrid contribution -0.275 1.022 1.235 1.627 sum -25.945 -3.997 -9.346 27.865 Atomic orbital electron populations 1.21935 0.94566 1.01604 1.01614 1.21259 0.94880 0.95951 0.94796 1.21847 1.02720 0.94400 1.00841 1.22428 1.00939 0.95189 0.96328 1.22446 1.00559 0.96718 0.96486 1.22450 1.00930 0.96534 0.95567 1.22225 0.93272 0.93060 0.93342 0.94000 1.60836 1.51466 1.05716 1.13015 1.20868 0.96856 0.97162 0.87916 1.19394 0.92965 0.96128 0.96541 1.20759 0.99072 0.97673 1.01166 1.20831 0.92963 0.98182 0.97887 1.21386 0.96061 1.01291 1.04330 1.19210 0.84207 0.93374 0.93437 1.86176 1.13570 1.56202 1.66903 1.23321 0.94087 0.90592 0.92859 1.19124 0.85296 0.98212 0.98570 1.20969 0.91328 1.15622 1.28506 0.92387 1.24996 0.97854 0.95766 0.95625 1.69981 1.09321 1.33095 1.40338 0.86484 0.79471 0.81256 0.80153 1.20513 1.21039 1.19772 1.20254 0.91961 1.01430 1.02100 0.92965 0.92498 0.92657 0.90556 0.92959 0.93086 0.91905 0.91139 0.91892 0.91490 0.90055 0.92215 0.83336 0.90136 0.94593 0.86923 0.86305 0.85320 0.93197 0.93153 0.95361 0.95420 0.92711 0.85414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 8.15 37.16 0.30 -0.59 16 2 C -0.07 -0.51 0.94 -153.39 -0.14 -0.65 16 3 C -0.14 -1.09 7.09 37.16 0.26 -0.83 16 4 C -0.11 -0.81 5.90 -25.07 -0.15 -0.96 16 5 C -0.12 -0.89 6.91 -24.74 -0.17 -1.07 16 6 C -0.12 -0.98 5.99 -25.07 -0.15 -1.13 16 7 C 0.09 0.75 2.86 -66.60 -0.19 0.56 16 8 H 0.04 0.35 7.50 -51.93 -0.39 -0.04 16 9 N -0.68 -6.52 5.24 -106.81 -0.56 -7.08 16 10 C 0.10 1.03 5.64 -4.98 -0.03 1.00 16 11 C -0.05 -0.64 5.39 -104.65 -0.56 -1.20 16 12 C -0.17 -2.04 9.70 -39.56 -0.38 -2.42 16 13 C -0.08 -1.06 10.04 -39.61 -0.40 -1.46 16 14 C -0.21 -3.36 9.04 -39.43 -0.36 -3.72 16 15 C 0.14 2.58 6.69 -39.21 -0.26 2.31 16 16 O -0.32 -6.64 10.14 -19.41 -0.20 -6.84 16 17 C 0.07 1.43 4.68 37.16 0.17 1.60 16 18 C 0.03 0.67 5.34 -27.88 -0.15 0.52 16 19 C -0.53 -14.77 9.11 -34.45 -0.31 -15.09 16 20 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 21 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 22 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 23 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 27 C -0.14 -2.15 9.64 -39.43 -0.38 -2.53 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.72 7.49 -51.93 -0.39 0.33 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.38 7.03 -51.93 -0.36 0.01 16 34 H 0.06 0.41 7.84 -51.93 -0.41 0.00 16 35 H 0.07 0.56 7.85 -51.93 -0.41 0.15 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.82 8.05 -51.93 -0.42 0.40 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.35 3.22 6.14 -39.29 -0.24 2.98 16 41 H 0.08 0.84 7.71 -51.92 -0.40 0.43 16 42 H 0.04 0.33 8.04 -51.93 -0.42 -0.09 16 43 H 0.11 1.10 8.06 -52.49 -0.42 0.67 16 44 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 45 H 0.13 2.02 6.30 -52.48 -0.33 1.69 16 46 H 0.05 1.03 7.66 -51.93 -0.40 0.64 16 47 H 0.05 1.05 7.66 -51.93 -0.40 0.65 16 48 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 50 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 51 H 0.13 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 400.87 15.07 6.04 6.04 Total: -1.00 -29.73 400.87 -11.17 -40.90 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -9.18 Total: 0.53 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: -3.00 Total: -24.03 kcal Atomic # 7 Polarization: -33.14 SS G_CDS: 0.18 Total: -32.96 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -0.20 Total: -6.84 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -29.73 -11.17 -40.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175868406.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.862 kcal (2) G-P(sol) polarization free energy of solvation -29.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds