Wall clock time and date at job start Tue Mar 31 2020 11:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 110.05661 * 2 1 4 4 C 1.54269 * 110.03394 * 238.58265 * 2 1 3 5 5 C 1.54890 * 104.19191 * 264.32705 * 4 2 1 6 6 C 1.54890 * 102.74986 * 322.05394 * 5 4 2 7 7 C 1.53877 * 110.03338 * 121.41147 * 2 1 3 8 8 H 1.08999 * 110.03179 * 359.95871 * 7 2 1 9 9 N 1.46896 * 110.03326 * 238.57090 * 7 2 1 10 10 C 1.46904 * 110.99845 * 164.90329 * 9 7 2 11 11 C 1.50695 * 109.47153 * 179.97438 * 10 9 7 12 12 C 1.38294 * 119.97081 * 90.00164 * 11 10 9 13 13 C 1.38239 * 120.11438 * 180.02562 * 12 11 10 14 14 C 1.38170 * 120.05475 * 359.97438 * 13 12 11 15 15 C 1.38715 * 119.94449 * 0.02562 * 14 13 12 16 16 O 1.35894 * 120.05632 * 180.02562 * 15 14 13 17 17 C 1.42904 * 116.99904 * 359.97438 * 16 15 14 18 18 C 1.53003 * 109.47256 * 179.97438 * 17 16 15 19 19 C 1.50693 * 109.47478 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99789 * 0.27475 * 19 18 17 21 21 C 1.37873 * 120.00492 * 180.02562 * 19 18 17 22 22 N 1.31521 * 119.99556 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00583 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47088 * 89.99662 * 23 21 19 25 25 H 1.48499 * 109.47480 * 210.00301 * 23 21 19 26 26 H 1.48501 * 109.46765 * 330.00024 * 23 21 19 27 27 C 1.38118 * 119.97530 * 270.25653 * 11 10 9 28 28 H 1.09004 * 109.47108 * 298.58541 * 1 2 3 29 29 H 1.08998 * 109.47349 * 58.58118 * 1 2 3 30 30 H 1.09000 * 109.47154 * 178.58865 * 1 2 3 31 31 H 1.08994 * 109.47468 * 175.03915 * 3 2 1 32 32 H 1.09007 * 109.46785 * 295.03480 * 3 2 1 33 33 H 1.08995 * 109.47120 * 55.03317 * 3 2 1 34 34 H 1.09000 * 110.48366 * 23.00161 * 4 2 1 35 35 H 1.08997 * 110.48754 * 145.51617 * 4 2 1 36 36 H 1.08996 * 110.75936 * 80.37342 * 5 4 2 37 37 H 1.09006 * 110.75173 * 203.73907 * 5 4 2 38 38 H 1.09004 * 110.48257 * 279.26786 * 6 5 4 39 39 H 1.09000 * 110.48717 * 156.62470 * 6 5 4 40 40 H 1.00896 * 111.00528 * 40.94989 * 9 7 2 41 41 H 1.09010 * 109.47059 * 59.99869 * 10 9 7 42 42 H 1.08994 * 109.47275 * 300.00038 * 10 9 7 43 43 H 1.08001 * 119.94308 * 0.02562 * 12 11 10 44 44 H 1.07998 * 119.97287 * 179.97438 * 13 12 11 45 45 H 1.08003 * 120.02700 * 179.97438 * 14 13 12 46 46 H 1.09003 * 109.47133 * 60.00410 * 17 16 15 47 47 H 1.08996 * 109.47386 * 299.99905 * 17 16 15 48 48 H 1.09007 * 109.46784 * 59.99648 * 18 17 16 49 49 H 1.08996 * 109.46854 * 300.00241 * 18 17 16 50 50 H 0.96998 * 119.99865 * 179.97438 * 22 21 19 51 51 H 1.08000 * 120.03181 * 0.02562 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4373 0.0000 4 6 2.0585 -0.7555 -1.2369 5 6 2.3280 -2.1902 -0.7190 6 6 2.8875 -1.9406 0.7036 7 6 2.0571 -0.7534 1.2338 8 1 1.2229 -1.1185 1.8329 9 7 2.9056 0.1337 2.0406 10 6 3.1273 -0.4256 3.3808 11 6 4.0003 0.5095 4.1773 12 6 3.4255 1.5085 4.9416 13 6 4.2236 2.3683 5.6729 14 6 5.5981 2.2311 5.6423 15 6 6.1772 1.2299 4.8764 16 8 7.5288 1.0926 4.8450 17 6 8.2928 2.0147 5.6247 18 6 9.7828 1.7056 5.4651 19 6 10.5885 2.6776 6.2878 20 1 10.0877 3.4369 6.8703 21 6 11.9647 2.5944 6.3012 22 7 12.5742 1.6664 5.5962 23 14 12.9635 3.7997 7.3205 24 1 13.1648 3.2470 8.6840 25 1 14.2830 4.0191 6.6754 26 1 12.2366 5.0914 7.4124 27 6 5.3740 0.3715 4.1391 28 1 -0.3633 0.4917 0.9024 29 1 -0.3634 0.5357 -0.8770 30 1 -0.3633 -1.0273 -0.0253 31 1 3.1410 1.4275 0.0889 32 1 1.7708 1.9277 -0.9312 33 1 1.6261 1.9805 0.8421 34 1 1.3061 -0.7696 -2.0254 35 1 2.9799 -0.2987 -1.5980 36 1 1.4031 -2.7651 -0.6750 37 1 3.0675 -2.6931 -1.3422 38 1 3.9440 -1.6766 0.6571 39 1 2.7402 -2.8196 1.3311 40 1 2.5100 1.0602 2.0964 41 1 3.6185 -1.3948 3.2934 42 1 2.1695 -0.5480 3.8864 43 1 2.3513 1.6171 4.9672 44 1 3.7724 3.1478 6.2688 45 1 6.2213 2.9033 6.2135 46 1 8.0134 1.9219 6.6742 47 1 8.0937 3.0308 5.2842 48 1 10.0626 1.7980 4.4156 49 1 9.9816 0.6896 5.8059 50 1 13.5424 1.6081 5.6053 51 1 5.8227 -0.4059 3.5385 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175868406.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:45 Heat of formation + Delta-G solvation = -53.677221 kcal Electronic energy + Delta-G solvation = -25973.585573 eV Core-core repulsion = 22450.171328 eV Total energy + Delta-G solvation = -3523.414245 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.12603 -40.44879 -38.69871 -35.74808 -35.38162 -33.13164 -32.59224 -32.05882 -30.58229 -28.38841 -28.12694 -27.03496 -25.93656 -24.61939 -23.55596 -23.25496 -21.72832 -21.20113 -19.47963 -19.00627 -18.12748 -17.10211 -16.95185 -16.87698 -16.70706 -16.57181 -16.42410 -15.89849 -15.16581 -14.97679 -14.61856 -14.33953 -14.31872 -14.27443 -14.09951 -13.90117 -13.81544 -13.22773 -13.12391 -12.87057 -12.82633 -12.59036 -12.55511 -12.52388 -12.40657 -12.11733 -11.88916 -11.78093 -11.68767 -11.59209 -11.55858 -11.39724 -11.35949 -11.33618 -11.25403 -10.63073 -9.81662 -9.30205 -9.07697 -8.27440 -6.41429 0.35511 0.53854 1.40194 1.42774 1.53940 2.26959 2.51195 2.76621 3.06750 3.39185 3.58940 3.68085 3.88136 3.92450 4.02257 4.14868 4.23270 4.25564 4.30889 4.41429 4.41638 4.45596 4.47868 4.55214 4.56574 4.57923 4.69794 4.72517 4.79965 4.83188 4.88173 4.97267 5.07251 5.10398 5.11320 5.13122 5.18487 5.25107 5.30490 5.37232 5.42943 5.45208 5.45361 5.49547 5.52557 5.59797 5.62174 5.68230 5.90930 6.06610 6.18586 6.51851 6.57951 6.73303 7.28677 8.85783 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.020889 B = 0.002100 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.123611 B =13332.499331 C =13981.364954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.067 4.067 3 C -0.137 4.137 4 C -0.112 4.112 5 C -0.121 4.121 6 C -0.119 4.119 7 C 0.093 3.907 8 H 0.050 0.950 9 N -0.686 5.686 10 C 0.105 3.895 11 C -0.043 4.043 12 C -0.153 4.153 13 C -0.077 4.077 14 C -0.223 4.223 15 C 0.105 3.895 16 O -0.344 6.344 17 C 0.086 3.914 18 C 0.028 3.972 19 C -0.546 4.546 20 H 0.071 0.929 21 C 0.000 4.000 22 N -0.931 5.931 23 Si 0.978 3.022 24 H -0.270 1.270 25 H -0.281 1.281 26 H -0.259 1.259 27 C -0.152 4.152 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.348 0.652 41 H 0.075 0.925 42 H 0.057 0.943 43 H 0.150 0.850 44 H 0.151 0.849 45 H 0.126 0.874 46 H 0.060 0.940 47 H 0.059 0.941 48 H -0.003 1.003 49 H -0.002 1.002 50 H 0.267 0.733 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.561 -3.332 -9.429 31.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.067 4.067 3 C -0.195 4.195 4 C -0.149 4.149 5 C -0.159 4.159 6 C -0.157 4.157 7 C -0.016 4.016 8 H 0.068 0.932 9 N -0.321 5.321 10 C -0.023 4.023 11 C -0.044 4.044 12 C -0.172 4.172 13 C -0.095 4.095 14 C -0.242 4.242 15 C 0.060 3.940 16 O -0.258 6.258 17 C 0.011 3.989 18 C -0.009 4.009 19 C -0.583 4.583 20 H 0.089 0.911 21 C -0.199 4.199 22 N -0.570 5.570 23 Si 0.801 3.199 24 H -0.195 1.195 25 H -0.206 1.206 26 H -0.183 1.183 27 C -0.171 4.171 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.170 0.830 41 H 0.093 0.907 42 H 0.075 0.925 43 H 0.168 0.832 44 H 0.169 0.831 45 H 0.144 0.856 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.016 0.984 49 H 0.016 0.984 50 H 0.076 0.924 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -28.701 -3.780 -9.831 30.572 hybrid contribution 0.523 0.565 0.923 1.202 sum -28.178 -3.215 -8.908 29.726 Atomic orbital electron populations 1.21899 0.93300 1.02069 1.02069 1.21259 0.95790 0.95416 0.94244 1.21797 1.01353 0.94952 1.01397 1.22432 1.00728 0.95075 0.96704 1.22440 1.00990 0.96889 0.95552 1.22442 0.99723 0.96908 0.96647 1.22248 0.93081 0.92747 0.93563 0.93234 1.60789 1.52342 1.06149 1.12773 1.20827 0.97118 0.96187 0.88158 1.19683 0.91885 0.96492 0.96308 1.21199 1.00866 0.96021 0.99097 1.21213 0.91696 0.98829 0.97719 1.21497 0.97591 1.00839 1.04295 1.19533 0.82717 0.95698 0.96043 1.86084 1.15811 1.56440 1.67480 1.22844 0.91360 0.91050 0.93616 1.18967 0.88993 0.96567 0.96389 1.21389 0.92097 1.16080 1.28784 0.91085 1.26075 0.99240 0.97735 0.96806 1.70129 1.09849 1.35092 1.41965 0.85260 0.77487 0.78880 0.78287 1.19494 1.20620 1.18277 1.20375 0.93265 1.01239 1.02220 0.92646 0.91932 0.92191 0.92620 0.92434 0.92463 0.90762 0.92394 0.90680 0.91565 0.92323 0.91886 0.82983 0.90690 0.92453 0.83237 0.83091 0.85617 0.92221 0.92305 0.98434 0.98406 0.92426 0.86399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.15 71.98 0.59 -0.79 16 2 C -0.07 -0.87 0.94 -51.45 -0.05 -0.92 16 3 C -0.14 -1.97 7.09 71.98 0.51 -1.46 16 4 C -0.11 -1.49 5.90 31.67 0.19 -1.31 16 5 C -0.12 -1.61 6.91 31.89 0.22 -1.39 16 6 C -0.12 -1.94 5.99 31.67 0.19 -1.75 16 7 C 0.09 1.39 2.86 45.64 0.13 1.52 16 8 H 0.05 0.69 7.50 -2.39 -0.02 0.67 16 9 N -0.69 -12.27 5.24 -491.83 -2.58 -14.85 16 10 C 0.11 1.97 5.64 85.55 0.48 2.45 16 11 C -0.04 -1.04 5.39 -19.88 -0.11 -1.14 16 12 C -0.15 -3.21 9.70 22.28 0.22 -2.99 16 13 C -0.08 -1.81 10.04 22.25 0.22 -1.58 16 14 C -0.22 -6.98 9.04 22.37 0.20 -6.77 16 15 C 0.11 3.87 6.69 22.51 0.15 4.02 16 16 O -0.34 -15.33 10.14 -92.36 -0.94 -16.27 16 17 C 0.09 3.89 4.68 71.98 0.34 4.23 16 18 C 0.03 1.58 5.34 29.85 0.16 1.74 16 19 C -0.55 -31.33 9.11 25.60 0.23 -31.10 16 20 H 0.07 3.80 7.74 -2.91 -0.02 3.77 16 21 C 0.00 0.00 5.46 84.65 0.46 0.46 16 22 N -0.93 -57.47 13.29 21.45 0.28 -57.18 16 23 Si 0.98 43.96 29.54 68.60 2.03 45.98 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 26 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 27 C -0.15 -4.82 9.64 22.37 0.22 -4.61 16 28 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.05 1.03 7.49 -2.39 -0.02 1.01 16 32 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.06 0.73 7.03 -2.39 -0.02 0.72 16 34 H 0.07 0.82 7.84 -2.39 -0.02 0.81 16 35 H 0.06 0.91 7.85 -2.39 -0.02 0.89 16 36 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.06 1.22 8.05 -2.38 -0.02 1.20 16 39 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.35 5.78 6.14 -89.70 -0.55 5.23 16 41 H 0.07 1.50 7.71 -2.38 -0.02 1.48 16 42 H 0.06 0.85 8.04 -2.39 -0.02 0.83 16 43 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 44 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 45 H 0.13 3.91 6.30 -2.91 -0.02 3.89 16 46 H 0.06 2.54 7.66 -2.39 -0.02 2.52 16 47 H 0.06 2.52 7.66 -2.39 -0.02 2.50 16 48 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 49 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 50 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 51 H 0.12 3.85 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -66.88 400.87 3.48 -63.40 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 0.33 Total: 20.31 kcal Atomic # 6 Polarization: -45.75 SS G_CDS: 4.35 Total: -41.40 kcal Atomic # 7 Polarization: -69.73 SS G_CDS: -2.29 Total: -72.03 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.94 Total: -16.27 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -66.88 3.48 -63.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175868406.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.727 kcal (2) G-P(sol) polarization free energy of solvation -66.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds