Wall clock time and date at job start Tue Mar 31 2020 12:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47073 * 2 1 4 4 C 1.50698 * 109.46995 * 119.99938 * 2 1 3 5 5 C 1.38285 * 119.96295 * 299.99839 * 4 2 1 6 6 C 1.38177 * 120.22866 * 180.40761 * 5 4 2 7 7 C 1.38901 * 119.67387 * 0.03151 * 6 5 4 8 8 C 1.37942 * 119.83800 * 359.22035 * 7 6 5 9 9 C 1.38030 * 120.53853 * 1.09643 * 8 7 6 10 10 C 1.51654 * 119.45567 * 181.27464 * 8 7 6 11 11 H 1.09001 * 109.60096 * 171.34161 * 10 8 7 12 12 N 1.46893 * 109.59963 * 51.02511 * 10 8 7 13 13 C 1.46901 * 111.00249 * 85.31364 * 12 10 8 14 14 C 1.52996 * 109.47195 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.46947 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.47238 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99515 * 0.02562 * 16 15 14 18 18 C 1.37870 * 120.00176 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99883 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00043 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47216 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47389 * 119.99848 * 20 18 16 23 23 H 1.48501 * 109.47057 * 239.99829 * 20 18 16 24 24 C 1.52885 * 108.83018 * 291.18245 * 10 8 7 25 25 C 1.52363 * 110.67361 * 83.16574 * 24 10 8 26 26 C 1.51425 * 113.57899 * 292.64454 * 25 24 10 27 27 O 1.36153 * 119.79934 * 177.79284 * 7 6 5 28 28 H 1.09006 * 109.47581 * 300.00000 * 1 2 3 29 29 H 1.08997 * 109.47626 * 59.99938 * 1 2 3 30 30 H 1.09003 * 109.47662 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46946 * 239.99801 * 2 1 3 32 32 H 1.08994 * 109.47397 * 60.00077 * 3 2 1 33 33 H 1.08998 * 109.47117 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.46923 * 299.99837 * 3 2 1 35 35 H 1.08002 * 119.89000 * 0.38541 * 5 4 2 36 36 H 1.08005 * 120.15996 * 180.02562 * 6 5 4 37 37 H 1.07998 * 120.18037 * 179.29799 * 9 8 7 38 38 H 1.00904 * 110.99880 * 321.35477 * 12 10 8 39 39 H 1.08992 * 109.46788 * 59.99832 * 13 12 10 40 40 H 1.08996 * 109.46661 * 300.00135 * 13 12 10 41 41 H 1.09001 * 109.47372 * 60.00105 * 14 13 12 42 42 H 1.09004 * 109.47108 * 299.99849 * 14 13 12 43 43 H 1.09001 * 109.46832 * 59.99979 * 15 14 13 44 44 H 1.09000 * 109.47611 * 300.00276 * 15 14 13 45 45 H 0.97004 * 119.99507 * 180.02562 * 19 18 16 46 46 H 1.09002 * 109.21156 * 203.73877 * 24 10 8 47 47 H 1.09003 * 109.21523 * 323.05219 * 24 10 8 48 48 H 1.09004 * 108.63613 * 171.56945 * 25 24 10 49 49 H 1.09005 * 108.50471 * 53.62873 * 25 24 10 50 50 H 1.08994 * 109.18418 * 305.06368 * 26 25 24 51 51 H 1.08994 * 109.18068 * 185.81788 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6977 -0.2372 2.4860 6 6 2.1622 -0.8794 3.6179 7 6 2.9681 -2.0033 3.4891 8 6 3.2858 -2.4798 2.2341 9 6 2.8278 -1.8355 1.1026 10 6 4.1424 -3.7245 2.1038 11 1 4.1664 -4.0445 1.0621 12 7 3.5823 -4.7974 2.9362 13 6 2.5334 -5.5304 2.2147 14 6 1.9751 -6.6367 3.1119 15 6 0.8822 -7.3997 2.3607 16 6 0.3326 -8.4899 3.2442 17 1 0.7235 -8.6248 4.2419 18 6 -0.6691 -9.3150 2.7788 19 7 -1.1447 -9.1510 1.5636 20 14 -1.3507 -10.6659 3.8742 21 1 -0.6513 -10.6413 5.1839 22 1 -2.8043 -10.4464 4.0846 23 1 -1.1381 -11.9843 3.2247 24 6 5.5606 -3.3988 2.5729 25 6 5.6628 -3.5031 4.0895 26 6 4.8682 -2.4442 4.8245 27 8 3.4641 -2.6115 4.6017 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.6767 1.9563 0.8899 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8901 35 1 1.0716 0.6374 2.5824 36 1 1.8999 -0.5091 4.5981 37 1 3.0894 -2.2070 0.1229 38 1 3.2330 -4.4325 3.8097 39 1 2.9545 -5.9722 1.3117 40 1 1.7315 -4.8438 1.9434 41 1 1.5539 -6.1945 4.0148 42 1 2.7769 -7.3234 3.3836 43 1 1.3031 -7.8418 1.4576 44 1 0.0806 -6.7128 2.0892 45 1 -1.8497 -9.7314 1.2364 46 1 6.2598 -4.0971 2.1129 47 1 5.8154 -2.3839 2.2674 48 1 6.7110 -3.4141 4.3750 49 1 5.3011 -4.4854 4.3939 50 1 5.1720 -1.4589 4.4712 51 1 5.0728 -2.5197 5.8924 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178275949.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:58 Heat of formation + Delta-G solvation = -42.723599 kcal Electronic energy + Delta-G solvation = -27239.237364 eV Core-core repulsion = 23716.298105 eV Total energy + Delta-G solvation = -3522.939260 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.95246 -38.43276 -36.67337 -35.02275 -34.35897 -32.77857 -31.52050 -30.49390 -29.35059 -27.35962 -27.25486 -25.80689 -24.61978 -22.93844 -22.41595 -22.13363 -20.44654 -20.09784 -19.25215 -17.90020 -16.71055 -16.19539 -16.01043 -15.67294 -14.99083 -14.72927 -14.54819 -14.40363 -14.22844 -14.04133 -13.82662 -13.66229 -13.43058 -13.14331 -12.91666 -12.56399 -12.47624 -12.27313 -12.12568 -11.91514 -11.64605 -11.45851 -11.34612 -11.20013 -10.99031 -10.92278 -10.79590 -10.70060 -10.60965 -10.48520 -10.35706 -9.98678 -9.61062 -9.27565 -8.98952 -8.88746 -8.43349 -8.28151 -8.04149 -5.93294 -3.94754 1.10620 1.26116 3.30873 3.35558 3.42567 3.47729 3.81737 4.40276 4.46536 4.53370 4.57964 4.75870 4.79727 4.85287 4.92347 4.97069 5.04858 5.12713 5.20474 5.25074 5.38578 5.39455 5.40697 5.42508 5.54625 5.59267 5.63908 5.71001 5.75260 5.81482 5.86272 5.90557 5.95859 5.98828 6.02773 6.04939 6.10301 6.23561 6.34799 6.39930 6.45012 6.50465 6.65920 6.84205 6.89173 7.24205 7.42486 7.47685 7.76638 7.84552 7.93615 8.08069 8.51918 9.12715 9.68802 11.18264 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.011593 B = 0.003287 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.726585 B = 8516.782355 C =10004.798379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.056 4.056 3 C -0.143 4.143 4 C -0.083 4.083 5 C -0.105 4.105 6 C -0.129 4.129 7 C 0.097 3.903 8 C -0.134 4.134 9 C -0.095 4.095 10 C 0.126 3.874 11 H 0.084 0.916 12 N -0.679 5.679 13 C 0.059 3.941 14 C -0.105 4.105 15 C 0.023 3.977 16 C -0.515 4.515 17 H 0.055 0.945 18 C 0.054 3.946 19 N -0.897 5.897 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.284 1.284 24 C -0.102 4.102 25 C -0.155 4.155 26 C 0.068 3.932 27 O -0.326 6.326 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.123 0.877 36 H 0.128 0.872 37 H 0.125 0.875 38 H 0.354 0.646 39 H 0.063 0.937 40 H 0.022 0.978 41 H 0.044 0.956 42 H 0.054 0.946 43 H 0.015 0.985 44 H 0.013 0.987 45 H 0.259 0.741 46 H 0.072 0.928 47 H 0.056 0.944 48 H 0.069 0.931 49 H 0.094 0.906 50 H 0.051 0.949 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.108 23.282 -0.414 26.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.074 4.074 3 C -0.200 4.200 4 C -0.083 4.083 5 C -0.123 4.123 6 C -0.148 4.148 7 C 0.053 3.947 8 C -0.136 4.136 9 C -0.114 4.114 10 C 0.015 3.985 11 H 0.102 0.898 12 N -0.314 5.314 13 C -0.070 4.070 14 C -0.143 4.143 15 C -0.015 4.015 16 C -0.554 4.554 17 H 0.074 0.926 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.140 4.140 25 C -0.193 4.193 26 C -0.006 4.006 27 O -0.242 6.242 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.141 0.859 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.177 0.823 39 H 0.082 0.918 40 H 0.041 0.959 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.033 0.967 44 H 0.031 0.969 45 H 0.068 0.932 46 H 0.091 0.909 47 H 0.075 0.925 48 H 0.087 0.913 49 H 0.112 0.888 50 H 0.069 0.931 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 12.387 22.634 -0.523 25.807 hybrid contribution -1.151 -0.067 0.377 1.213 sum 11.237 22.566 -0.145 25.210 Atomic orbital electron populations 1.21872 0.94148 1.02473 1.01800 1.20111 0.96120 0.95861 0.95339 1.21851 1.01102 0.95201 1.01846 1.19898 0.97809 0.95889 0.94727 1.20793 1.00069 1.00013 0.91406 1.21261 1.00094 0.94132 0.99304 1.18428 0.97807 0.92716 0.85738 1.21162 1.00786 0.98806 0.92870 1.20878 0.97580 0.95033 0.97871 1.20754 0.92711 0.86517 0.98478 0.89758 1.60911 1.37577 1.25421 1.07467 1.22126 0.91583 0.95630 0.97642 1.21594 0.99093 0.95776 0.97871 1.19059 0.92485 0.94458 0.95478 1.21311 1.18943 1.14813 1.00316 0.92643 1.25033 0.96765 0.97712 0.95092 1.69988 1.28130 1.39143 1.16425 0.86549 0.78766 0.81921 0.80857 1.19720 1.21083 1.21059 1.21367 0.95906 1.00873 0.95856 1.21666 0.99940 1.02037 0.95675 1.22541 0.79158 0.98250 1.00684 1.86262 1.24167 1.72577 1.41218 0.92496 0.92382 0.92162 0.90419 0.92515 0.92632 0.92415 0.85883 0.85417 0.85746 0.82271 0.91813 0.95932 0.93756 0.92674 0.96655 0.96890 0.93179 0.90886 0.92526 0.91274 0.88795 0.93067 0.88592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.01 37.16 0.33 -0.94 16 2 C -0.06 -0.50 3.09 -91.78 -0.28 -0.78 16 3 C -0.14 -1.04 9.01 37.16 0.33 -0.71 16 4 C -0.08 -0.91 4.79 -104.55 -0.50 -1.41 16 5 C -0.10 -1.13 8.70 -39.59 -0.34 -1.47 16 6 C -0.13 -1.55 10.01 -39.36 -0.39 -1.94 16 7 C 0.10 1.29 5.28 -39.44 -0.21 1.09 16 8 C -0.13 -1.76 4.60 -104.34 -0.48 -2.24 16 9 C -0.09 -1.15 9.31 -39.60 -0.37 -1.51 16 10 C 0.13 1.68 2.68 -68.46 -0.18 1.49 16 11 H 0.08 1.12 7.60 -51.93 -0.39 0.72 16 12 N -0.68 -10.86 4.93 -107.52 -0.53 -11.39 16 13 C 0.06 1.11 5.49 -3.83 -0.02 1.09 16 14 C -0.11 -2.35 5.41 -26.73 -0.14 -2.49 16 15 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 16 C -0.52 -15.23 9.11 -34.44 -0.31 -15.54 16 17 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 18 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -27.77 13.29 55.43 0.74 -27.03 16 20 Si 0.89 22.33 29.54 -169.99 -5.02 17.31 16 21 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 22 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 23 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 24 C -0.10 -1.11 5.58 -27.12 -0.15 -1.26 16 25 C -0.16 -1.61 5.28 -27.85 -0.15 -1.75 16 26 C 0.07 0.69 6.49 36.36 0.24 0.93 16 27 O -0.33 -4.36 8.01 -20.23 -0.16 -4.52 16 28 H 0.06 0.48 7.38 -51.93 -0.38 0.09 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.67 7.88 -51.93 -0.41 0.26 16 32 H 0.06 0.40 7.39 -51.93 -0.38 0.01 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.12 1.08 7.09 -52.49 -0.37 0.71 16 36 H 0.13 1.34 8.06 -52.48 -0.42 0.91 16 37 H 0.12 1.34 7.88 -52.49 -0.41 0.92 16 38 H 0.35 5.88 5.29 -39.29 -0.21 5.67 16 39 H 0.06 1.19 8.06 -51.93 -0.42 0.78 16 40 H 0.02 0.44 8.02 -51.93 -0.42 0.03 16 41 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.06 0.56 7.90 -51.93 -0.41 0.15 16 48 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.09 1.16 6.80 -51.93 -0.35 0.81 16 50 H 0.05 0.48 7.90 -51.93 -0.41 0.07 16 51 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 394.19 15.07 5.94 5.94 Total: -1.00 -31.77 394.19 -11.09 -42.86 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -9.19 Total: 2.29 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: -2.87 Total: -25.47 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.21 Total: -38.42 kcal Atomic # 8 Polarization: -4.36 SS G_CDS: -0.16 Total: -4.52 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.77 -11.09 -42.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178275949.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.140 kcal (2) G-P(sol) polarization free energy of solvation -31.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds