Wall clock time and date at job start Tue Mar 31 2020 12:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47073 * 2 1 4 4 C 1.50698 * 109.46995 * 119.99938 * 2 1 3 5 5 C 1.38285 * 119.96295 * 299.99839 * 4 2 1 6 6 C 1.38177 * 120.22866 * 180.40761 * 5 4 2 7 7 C 1.38901 * 119.67387 * 0.03151 * 6 5 4 8 8 C 1.37942 * 119.83800 * 359.22035 * 7 6 5 9 9 C 1.38030 * 120.53853 * 1.09643 * 8 7 6 10 10 C 1.51654 * 119.45567 * 181.27464 * 8 7 6 11 11 H 1.09001 * 109.60096 * 171.34161 * 10 8 7 12 12 N 1.46893 * 109.59963 * 51.02511 * 10 8 7 13 13 C 1.46901 * 111.00249 * 85.31364 * 12 10 8 14 14 C 1.52996 * 109.47195 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.46947 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.47238 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99515 * 0.02562 * 16 15 14 18 18 C 1.37870 * 120.00176 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99883 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00043 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47216 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47389 * 119.99848 * 20 18 16 23 23 H 1.48501 * 109.47057 * 239.99829 * 20 18 16 24 24 C 1.52885 * 108.83018 * 291.18245 * 10 8 7 25 25 C 1.52363 * 110.67361 * 83.16574 * 24 10 8 26 26 C 1.51425 * 113.57899 * 292.64454 * 25 24 10 27 27 O 1.36153 * 119.79934 * 177.79284 * 7 6 5 28 28 H 1.09006 * 109.47581 * 300.00000 * 1 2 3 29 29 H 1.08997 * 109.47626 * 59.99938 * 1 2 3 30 30 H 1.09003 * 109.47662 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46946 * 239.99801 * 2 1 3 32 32 H 1.08994 * 109.47397 * 60.00077 * 3 2 1 33 33 H 1.08998 * 109.47117 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.46923 * 299.99837 * 3 2 1 35 35 H 1.08002 * 119.89000 * 0.38541 * 5 4 2 36 36 H 1.08005 * 120.15996 * 180.02562 * 6 5 4 37 37 H 1.07998 * 120.18037 * 179.29799 * 9 8 7 38 38 H 1.00904 * 110.99880 * 321.35477 * 12 10 8 39 39 H 1.08992 * 109.46788 * 59.99832 * 13 12 10 40 40 H 1.08996 * 109.46661 * 300.00135 * 13 12 10 41 41 H 1.09001 * 109.47372 * 60.00105 * 14 13 12 42 42 H 1.09004 * 109.47108 * 299.99849 * 14 13 12 43 43 H 1.09001 * 109.46832 * 59.99979 * 15 14 13 44 44 H 1.09000 * 109.47611 * 300.00276 * 15 14 13 45 45 H 0.97004 * 119.99507 * 180.02562 * 19 18 16 46 46 H 1.09002 * 109.21156 * 203.73877 * 24 10 8 47 47 H 1.09003 * 109.21523 * 323.05219 * 24 10 8 48 48 H 1.09004 * 108.63613 * 171.56945 * 25 24 10 49 49 H 1.09005 * 108.50471 * 53.62873 * 25 24 10 50 50 H 1.08994 * 109.18418 * 305.06368 * 26 25 24 51 51 H 1.08994 * 109.18068 * 185.81788 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6977 -0.2372 2.4860 6 6 2.1622 -0.8794 3.6179 7 6 2.9681 -2.0033 3.4891 8 6 3.2858 -2.4798 2.2341 9 6 2.8278 -1.8355 1.1026 10 6 4.1424 -3.7245 2.1038 11 1 4.1664 -4.0445 1.0621 12 7 3.5823 -4.7974 2.9362 13 6 2.5334 -5.5304 2.2147 14 6 1.9751 -6.6367 3.1119 15 6 0.8822 -7.3997 2.3607 16 6 0.3326 -8.4899 3.2442 17 1 0.7235 -8.6248 4.2419 18 6 -0.6691 -9.3150 2.7788 19 7 -1.1447 -9.1510 1.5636 20 14 -1.3507 -10.6659 3.8742 21 1 -0.6513 -10.6413 5.1839 22 1 -2.8043 -10.4464 4.0846 23 1 -1.1381 -11.9843 3.2247 24 6 5.5606 -3.3988 2.5729 25 6 5.6628 -3.5031 4.0895 26 6 4.8682 -2.4442 4.8245 27 8 3.4641 -2.6115 4.6017 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.6767 1.9563 0.8899 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8901 35 1 1.0716 0.6374 2.5824 36 1 1.8999 -0.5091 4.5981 37 1 3.0894 -2.2070 0.1229 38 1 3.2330 -4.4325 3.8097 39 1 2.9545 -5.9722 1.3117 40 1 1.7315 -4.8438 1.9434 41 1 1.5539 -6.1945 4.0148 42 1 2.7769 -7.3234 3.3836 43 1 1.3031 -7.8418 1.4576 44 1 0.0806 -6.7128 2.0892 45 1 -1.8497 -9.7314 1.2364 46 1 6.2598 -4.0971 2.1129 47 1 5.8154 -2.3839 2.2674 48 1 6.7110 -3.4141 4.3750 49 1 5.3011 -4.4854 4.3939 50 1 5.1720 -1.4589 4.4712 51 1 5.0728 -2.5197 5.8924 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178275949.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:57 Heat of formation + Delta-G solvation = -58.779310 kcal Electronic energy + Delta-G solvation = -27239.933592 eV Core-core repulsion = 23716.298105 eV Total energy + Delta-G solvation = -3523.635488 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.88424 -39.28156 -37.90529 -36.08167 -35.76272 -34.51158 -32.78510 -31.76573 -30.48210 -28.40547 -27.98632 -27.43234 -25.65363 -24.37508 -23.60221 -23.10020 -21.96962 -21.27878 -20.22492 -18.82607 -18.51932 -17.55106 -17.05081 -16.58721 -16.54012 -15.99129 -15.81310 -15.66110 -15.36925 -15.08945 -14.75075 -14.43644 -14.39910 -14.35602 -14.05304 -13.93037 -13.62705 -13.38754 -13.30612 -13.16602 -12.97013 -12.79506 -12.62754 -12.47469 -12.30739 -12.15293 -11.95367 -11.82536 -11.70573 -11.62326 -11.50129 -11.43526 -11.38430 -11.07821 -10.88858 -10.57454 -9.84606 -9.40136 -9.28551 -8.21344 -6.32686 0.20891 0.34386 1.38641 1.39391 1.53306 2.40135 2.44620 2.89125 3.11341 3.30916 3.54691 3.77859 3.85364 3.96115 4.03612 4.12259 4.13173 4.21407 4.30801 4.33039 4.35700 4.40018 4.49348 4.56115 4.56916 4.68743 4.72644 4.80398 4.83135 4.88433 4.93162 4.97695 4.98811 5.03531 5.05553 5.10128 5.13429 5.19838 5.21937 5.28867 5.37807 5.39688 5.45678 5.48013 5.51440 5.66108 5.71975 5.80889 5.83205 6.09419 6.26168 6.50988 6.53719 6.83542 7.36426 8.90952 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.011593 B = 0.003287 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.726585 B = 8516.782355 C =10004.798379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.055 4.055 3 C -0.138 4.138 4 C -0.085 4.085 5 C -0.103 4.103 6 C -0.140 4.140 7 C 0.080 3.920 8 C -0.148 4.148 9 C -0.108 4.108 10 C 0.123 3.877 11 H 0.081 0.919 12 N -0.674 5.674 13 C 0.074 3.926 14 C -0.089 4.089 15 C 0.029 3.971 16 C -0.543 4.543 17 H 0.058 0.942 18 C -0.002 4.002 19 N -0.933 5.933 20 Si 0.968 3.032 21 H -0.263 1.263 22 H -0.277 1.277 23 H -0.275 1.275 24 C -0.098 4.098 25 C -0.152 4.152 26 C 0.064 3.936 27 O -0.345 6.345 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.039 0.961 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.145 0.855 36 H 0.140 0.860 37 H 0.131 0.869 38 H 0.351 0.649 39 H 0.063 0.937 40 H 0.008 0.992 41 H 0.040 0.960 42 H 0.055 0.945 43 H -0.007 1.007 44 H -0.014 1.014 45 H 0.264 0.736 46 H 0.078 0.922 47 H 0.069 0.931 48 H 0.094 0.906 49 H 0.071 0.929 50 H 0.061 0.939 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.679 24.321 0.380 27.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.074 4.074 3 C -0.195 4.195 4 C -0.085 4.085 5 C -0.121 4.121 6 C -0.158 4.158 7 C 0.037 3.963 8 C -0.151 4.151 9 C -0.127 4.127 10 C 0.013 3.987 11 H 0.099 0.901 12 N -0.309 5.309 13 C -0.055 4.055 14 C -0.127 4.127 15 C -0.009 4.009 16 C -0.581 4.581 17 H 0.076 0.924 18 C -0.200 4.200 19 N -0.574 5.574 20 Si 0.792 3.208 21 H -0.187 1.187 22 H -0.202 1.202 23 H -0.201 1.201 24 C -0.136 4.136 25 C -0.190 4.190 26 C -0.010 4.010 27 O -0.262 6.262 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.058 0.942 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.163 0.837 36 H 0.157 0.843 37 H 0.149 0.851 38 H 0.175 0.825 39 H 0.082 0.918 40 H 0.027 0.973 41 H 0.059 0.941 42 H 0.074 0.926 43 H 0.012 0.988 44 H 0.004 0.996 45 H 0.073 0.927 46 H 0.096 0.904 47 H 0.087 0.913 48 H 0.112 0.888 49 H 0.090 0.910 50 H 0.080 0.920 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 12.981 23.690 0.272 27.015 hybrid contribution -1.328 -0.338 0.089 1.374 sum 11.653 23.351 0.361 26.100 Atomic orbital electron populations 1.21870 0.94070 1.01443 1.02832 1.20152 0.96088 0.96776 0.94341 1.21817 1.01007 0.93977 1.02746 1.20175 0.97112 0.95500 0.95762 1.21069 0.99699 1.00399 0.90972 1.21496 0.99950 0.94026 1.00343 1.18639 0.98514 0.93375 0.85788 1.21154 1.01530 0.99021 0.93351 1.21083 0.98017 0.95621 0.97961 1.20847 0.94099 0.85921 0.97852 0.90115 1.60887 1.35820 1.26744 1.07440 1.21810 0.92000 0.94646 0.97036 1.21341 0.97521 0.96291 0.97592 1.18939 0.92987 0.94013 0.94971 1.21705 1.19737 1.15837 1.00796 0.92362 1.26018 0.96916 1.00371 0.96646 1.70116 1.28636 1.40340 1.18288 0.85359 0.78108 0.78380 0.78964 1.18650 1.20224 1.20086 1.21350 0.94106 1.01676 0.96435 1.21645 1.01382 1.00845 0.95122 1.22743 0.77746 0.98680 1.01840 1.86227 1.25850 1.72892 1.41253 0.91988 0.90877 0.94179 0.90369 0.92020 0.92750 0.91129 0.83718 0.84259 0.85103 0.82536 0.91812 0.97327 0.94081 0.92589 0.98848 0.99568 0.92729 0.90372 0.91266 0.88774 0.90986 0.92031 0.86805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.01 71.98 0.65 -1.73 16 2 C -0.06 -0.91 3.09 -11.54 -0.04 -0.94 16 3 C -0.14 -1.74 9.01 71.98 0.65 -1.09 16 4 C -0.09 -1.80 4.79 -19.82 -0.09 -1.89 16 5 C -0.10 -2.11 8.70 22.27 0.19 -1.92 16 6 C -0.14 -3.24 10.01 22.41 0.22 -3.02 16 7 C 0.08 2.12 5.28 22.36 0.12 2.24 16 8 C -0.15 -3.90 4.60 -19.68 -0.09 -3.99 16 9 C -0.11 -2.60 9.31 22.26 0.21 -2.39 16 10 C 0.12 3.26 2.68 44.44 0.12 3.38 16 11 H 0.08 2.16 7.60 -2.39 -0.02 2.14 16 12 N -0.67 -21.78 4.93 -494.09 -2.44 -24.22 16 13 C 0.07 2.89 5.49 86.30 0.47 3.37 16 14 C -0.09 -4.09 5.41 30.59 0.17 -3.93 16 15 C 0.03 1.61 4.97 29.85 0.15 1.76 16 16 C -0.54 -32.63 9.11 25.60 0.23 -32.40 16 17 H 0.06 3.39 7.74 -2.91 -0.02 3.36 16 18 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 19 N -0.93 -58.70 13.29 21.45 0.28 -58.42 16 20 Si 0.97 45.84 29.54 68.60 2.03 47.87 16 21 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 23 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 24 C -0.10 -2.02 5.58 30.35 0.17 -1.85 16 25 C -0.15 -2.93 5.28 29.87 0.16 -2.77 16 26 C 0.06 1.21 6.49 71.47 0.46 1.67 16 27 O -0.35 -9.09 8.01 -95.29 -0.76 -9.85 16 28 H 0.06 0.94 7.38 -2.38 -0.02 0.92 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.08 1.27 7.88 -2.39 -0.02 1.25 16 32 H 0.06 0.72 7.39 -2.39 -0.02 0.70 16 33 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 35 H 0.15 2.24 7.09 -2.91 -0.02 2.22 16 36 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 37 H 0.13 2.83 7.88 -2.91 -0.02 2.81 16 38 H 0.35 11.81 5.29 -89.69 -0.47 11.34 16 39 H 0.06 2.46 8.06 -2.39 -0.02 2.44 16 40 H 0.01 0.35 8.02 -2.39 -0.02 0.33 16 41 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.06 2.53 8.14 -2.38 -0.02 2.51 16 43 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 44 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 45 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 46 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.07 1.27 7.90 -2.39 -0.02 1.25 16 48 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 49 H 0.07 1.73 6.80 -2.38 -0.02 1.71 16 50 H 0.06 1.04 7.90 -2.39 -0.02 1.02 16 51 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -68.95 394.19 3.73 -65.22 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: 0.41 Total: 24.55 kcal Atomic # 6 Polarization: -49.36 SS G_CDS: 4.21 Total: -45.15 kcal Atomic # 7 Polarization: -80.49 SS G_CDS: -2.15 Total: -82.64 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: -0.76 Total: -9.85 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -68.95 3.73 -65.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178275949.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.440 kcal (2) G-P(sol) polarization free energy of solvation -68.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds